Rmu_sc0001117.1_g000002

protein import into mitochondrial matrix

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001117.1
OG0014249
Physical Location & Seq
Reverse (-)
13796 .. 14239
444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001117.1_g000002.1.cds

Sequence Viewer

Length: 444 bp
atgactcgtccttttcaactgaatcacctcgttcttcttcttcttcttctagctactacctcaacagccaggccgggctttctcttcactcggaccaccggccggtgcacaccggactactggggcagccgggtggagtcgtggccgaggatggtcccgcagacatcgacggtgtccaaggtgttcgggtccagagcctacgaacggtacagatccgatctgacgctgctggaagcgacggcaaggagcgacgacgagaacgtcttccctaggctgctgaagcaggcgagcgcggcgctgctcaactcgtactccaggaaggggttcccgtacacggcgtgggaggtgaagactcgggtcatacagggcttggtgtccgagagggcggcgtcccgtcaggcccagctattctctcaggccaatgaggcttgtgatctgcactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.66

Weight (kDa)

9.92

Isoelectric Point (pI)

35.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014249)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20515
fragaria_vesca FvH4_2g21450
malus_domestica MD05G1197000.v1.1
prunus_persica Prupe.8G223500_v2.0.a1
pyrus_communis pycom10g15900
rosa_chinensis RchiOBHm_Chr6g0288091
rosa_laevigata RLG00000012440
rosa_multiflora Rmu_co7961866.1_g000001 Rmu_sc0001117.1_g000002 Rmu_sc0010766.1_g000001
rosa_roxburghii Rroxscaffold_7G00180520
rosa_rugosa Rorug06G0194200
rosa_samantha Rh6AG304300 Rh6BG310300 Rh6CG318300 Rh6DG303200
rosa_wichuraiana Rw6G026330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 260
AccII CGCG 1 cut(s) 293
AciI CCGC 3 cut(s) 158, 293, 386
AclWI GGATC 1 cut(s) 207
AcoI YGGCCR 2 cut(s) 100, 143
AcuI CTGAAG 1 cut(s) 299
AcyI GRCGYC 1 cut(s) 389
AdeI CACNNNGTG 1 cut(s) 339
AfaI GTAC 3 cut(s) 209, 311, 332
AfiI CCNNNNNNNGG 4 cut(s) 102, 204, 321, 334
AgsI TTSAA 1 cut(s) 17
AjnI CCWGG 2 cut(s) 68, 314
AluBI AGCT 2 cut(s) 53, 406
AluI AGCT 2 cut(s) 53, 406
Alw21I GWGCWC 1 cut(s) 110
Alw44I GTGCAC 1 cut(s) 106
AlwI GGATC 1 cut(s) 207
Ama87I CYCGRG 1 cut(s) 354
AoxI GGCC 5 cut(s) 71, 100, 143, 399, 417
ApaLI GTGCAC 1 cut(s) 106
ApeKI GCWGC 4 cut(s) 126, 226, 274, 298
Asp700I GAANNNNTTC 2 cut(s) 263, 323
AspA2I CCTAGG 1 cut(s) 269
AspLEI GCGC 2 cut(s) 293, 298
AspS9I GGNCC 4 cut(s) 93, 154, 189, 400
AsuC2I CCSGG 2 cut(s) 75, 131
AsuHPI GGTGA 2 cut(s) 17, 358
AvaI CYCGRG 1 cut(s) 354
AvaII GGWCC 3 cut(s) 93, 154, 189
AvrII CCTAGG 1 cut(s) 269
BaeGI GKGCMC 1 cut(s) 110
BbsI GAAGAC 2 cut(s) 256, 356
Bbv12I GWGCWC 1 cut(s) 110
BbvI GCAGC 4 cut(s) 138, 213, 261, 285
BccI CCATC 1 cut(s) 145
BceAI ACGGC 2 cut(s) 255, 351
BciT130I CCWGG 2 cut(s) 70, 316
BcnI CCSGG 2 cut(s) 75, 131
BfaI CTAG 3 cut(s) 50, 270, 442
BfoI RGCGCY 1 cut(s) 299
BglI GCCNNNNNGGC 1 cut(s) 425
BisI GCNGC 6 cut(s) 127, 227, 275, 294, 299, 387
BlnI CCTAGG 1 cut(s) 269
BlsI GCNGC 6 cut(s) 128, 228, 276, 295, 300, 388
Bme1390I CCNGG 4 cut(s) 70, 75, 131, 316
Bme18I GGWCC 3 cut(s) 93, 154, 189
BmeT110I CYCGRG 1 cut(s) 354
BmgT120I GGNCC 4 cut(s) 93, 154, 189, 400
BmiI GGNNCC 3 cut(s) 156, 190, 326
BmrFI CCNGG 4 cut(s) 70, 75, 131, 316
BmrI ACTGGG 1 cut(s) 130
BmuI ACTGGG 1 cut(s) 130
BoxI GACNNNNGTC 1 cut(s) 356
BpiI GAAGAC 2 cut(s) 256, 356
BpmI CTGGAG 1 cut(s) 298
BpuMI CCSGG 2 cut(s) 75, 131
BsaHI GRCGYC 1 cut(s) 389
BsaJI CCNNGG 3 cut(s) 146, 177, 269
BsaWI WCCGGW 1 cut(s) 112
BsaXI ACNNNNNCTCC 2 cut(s) 296, 326
Bsc4I CCNNNNNNNGG 4 cut(s) 102, 204, 321, 334
Bse118I RCCGGY 2 cut(s) 98, 102
Bse1I ACTGG 1 cut(s) 125
BseBI CCWGG 2 cut(s) 70, 316
BseDI CCNNGG 3 cut(s) 146, 177, 269
BseGI GGATG 1 cut(s) 156
BseLI CCNNNNNNNGG 4 cut(s) 102, 204, 321, 334
BseMII CTCAG 1 cut(s) 428
BseNI ACTGG 1 cut(s) 125
BseSI GKGCMC 1 cut(s) 110
BseX3I CGGCCG 1 cut(s) 100
BseXI GCAGC 4 cut(s) 138, 213, 261, 285
BseYI CCCAGC 1 cut(s) 402
BsgI GTGCAG 1 cut(s) 422
Bsh1236I CGCG 1 cut(s) 293
Bsh1285I CGRYCG 1 cut(s) 103
BshFI GGCC 5 cut(s) 73, 102, 145, 401, 419
BsiEI CGRYCG 1 cut(s) 103
BsiHKAI GWGCWC 1 cut(s) 110
BsiHKCI CYCGRG 1 cut(s) 354
BsiSI CCGG 5 cut(s) 74, 99, 103, 113, 130
BslFI GGGAC 2 cut(s) 140, 376
BslI CCNNNNNNNGG 4 cut(s) 102, 204, 321, 334
BsmFI GGGAC 2 cut(s) 140, 376
BsnI GGCC 5 cut(s) 73, 102, 145, 401, 419
BsoBI CYCGRG 1 cut(s) 354
Bsp1286I GDGCHC 1 cut(s) 110
Bsp143I GATC 3 cut(s) 212, 217, 433
BspACI CCGC 3 cut(s) 158, 293, 386
BspANI GGCC 5 cut(s) 73, 102, 145, 401, 419
BspCNI CTCAG 1 cut(s) 427
BspFNI CGCG 1 cut(s) 293
BspLI GGNNCC 3 cut(s) 156, 190, 326
BspPI GGATC 1 cut(s) 207
BsrFI RCCGGY 2 cut(s) 98, 102
BsrI ACTGG 1 cut(s) 125
BssAI RCCGGY 2 cut(s) 98, 102
BssECI CCNNGG 3 cut(s) 146, 177, 269
BssMI GATC 3 cut(s) 212, 217, 433
BssNI GRCGYC 1 cut(s) 389
BssT1I CCWWGG 2 cut(s) 177, 269
Bst2UI CCWGG 2 cut(s) 70, 316
Bst4CI ACNGT 2 cut(s) 172, 207
Bst6I CTCTTC 1 cut(s) 89
BstACI GRCGYC 1 cut(s) 389
BstC8I GCNNGC 2 cut(s) 285, 289
BstDEI CTNAG 1 cut(s) 414
BstF5I GGATG 1 cut(s) 156
BstFNI CGCG 1 cut(s) 293
BstH2I RGCGCY 1 cut(s) 299
BstHHI GCGC 2 cut(s) 293, 298
BstKTI GATC 3 cut(s) 215, 220, 436
BstMBI GATC 3 cut(s) 212, 217, 433
BstMCI CGRYCG 1 cut(s) 103
BstMWI GCNNNNNNNGC 3 cut(s) 280, 293, 425
BstNI CCWGG 2 cut(s) 70, 316
BstPAI GACNNNNGTC 1 cut(s) 356
BstSCI CCNGG 4 cut(s) 68, 73, 129, 314
BstSLI GKGCMC 1 cut(s) 110
BstUI CGCG 1 cut(s) 293
BstV1I GCAGC 4 cut(s) 138, 213, 261, 285
BstV2I GAAGAC 2 cut(s) 256, 356
BstX2I RGATCY 1 cut(s) 212
BstYI RGATCY 1 cut(s) 212
BstZI CGGCCG 1 cut(s) 100
BsuRI GGCC 5 cut(s) 73, 102, 145, 401, 419
BtsCI GGATG 1 cut(s) 156
Cac8I GCNNGC 2 cut(s) 285, 289
CfoI GCGC 2 cut(s) 293, 298
Cfr10I RCCGGY 2 cut(s) 98, 102
Cfr13I GGNCC 4 cut(s) 93, 154, 189, 400
CseI GACGC 2 cut(s) 232, 378
Csp6I GTAC 3 cut(s) 208, 310, 331
CviQI GTAC 3 cut(s) 208, 310, 331
DdeI CTNAG 1 cut(s) 414
DpnI GATC 3 cut(s) 214, 219, 435
DpnII GATC 3 cut(s) 212, 217, 433
DraIII CACNNNGTG 1 cut(s) 339
DrdI GACNNNNNNGTC 1 cut(s) 260
DseDI GACNNNNNNGTC 1 cut(s) 260
EaeI YGGCCR 2 cut(s) 100, 143
EagI CGGCCG 1 cut(s) 100
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
EclXI CGGCCG 1 cut(s) 100
Eco130I CCWWGG 2 cut(s) 177, 269
Eco47I GGWCC 3 cut(s) 93, 154, 189
Eco52I CGGCCG 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 299
Eco88I CYCGRG 1 cut(s) 354
EcoRII CCWGG 2 cut(s) 68, 314
EcoT14I CCWWGG 2 cut(s) 177, 269
ErhI CCWWGG 2 cut(s) 177, 269
FaiI YATR 1 cut(s) 362
FaqI GGGAC 2 cut(s) 140, 376
FauI CCCGC 1 cut(s) 165
Fnu4HI GCNGC 6 cut(s) 127, 227, 275, 294, 299, 387
FokI GGATG 1 cut(s) 163
Fsp4HI GCNGC 6 cut(s) 127, 227, 275, 294, 299, 387
FspBI CTAG 3 cut(s) 50, 270, 442
GlaI GCGC 2 cut(s) 292, 297
GluI GCNGC 6 cut(s) 127, 227, 275, 294, 299, 387
GsaI CCCAGC 1 cut(s) 406
GsuI CTGGAG 1 cut(s) 298
HaeII RGCGCY 1 cut(s) 299
HaeIII GGCC 5 cut(s) 73, 102, 145, 401, 419
HapII CCGG 5 cut(s) 74, 99, 103, 113, 130
HgaI GACGC 2 cut(s) 232, 378
HhaI GCGC 2 cut(s) 293, 298
Hin1I GRCGYC 1 cut(s) 389
Hin6I GCGC 2 cut(s) 291, 296
HinP1I GCGC 2 cut(s) 291, 296
HinfI GANTC 4 cut(s) 4, 22, 137, 352
HpaII CCGG 5 cut(s) 74, 99, 103, 113, 130
HphI GGTGA 2 cut(s) 17, 358
Hpy166II GTNNAC 2 cut(s) 108, 333
Hpy188I TCNGA 4 cut(s) 93, 217, 222, 379
Hpy188III TCNNGA 1 cut(s) 192
Hpy8I GTNNAC 2 cut(s) 108, 333
Hpy99I CGWCG 4 cut(s) 172, 241, 254, 257
HpyAV CCTTC 1 cut(s) 313
HpyCH4III ACNGT 2 cut(s) 172, 207
HpyCH4IV ACGT 1 cut(s) 261
HpyCH4V TGCA 2 cut(s) 108, 439
HpyF10VI GCNNNNNNNGC 3 cut(s) 280, 293, 425
HpyF3I CTNAG 1 cut(s) 414
HpySE526I ACGT 1 cut(s) 261
Hsp92I GRCGYC 1 cut(s) 389
HspAI GCGC 2 cut(s) 291, 296
Kzo9I GATC 3 cut(s) 212, 217, 433
LmnI GCTCC 1 cut(s) 246
Lsp1109I GCAGC 4 cut(s) 138, 213, 261, 285
MaeI CTAG 3 cut(s) 50, 270, 442
MaeII ACGT 1 cut(s) 261
MalI GATC 3 cut(s) 214, 219, 435
MboI GATC 3 cut(s) 212, 217, 433
MboII GAAGA 8 cut(s) 26, 29, 32, 35, 38, 76, 256, 361
MflI RGATCY 1 cut(s) 212
MhlI GDGCHC 1 cut(s) 110
MlyI GAGTC 2 cut(s) 146, 346
MnlI CCTC 6 cut(s) 38, 70, 141, 337, 375, 418
MroXI GAANNNNTTC 2 cut(s) 263, 323
MspI CCGG 5 cut(s) 74, 99, 103, 113, 130
MspR9I CCNGG 4 cut(s) 70, 75, 131, 316
MteI GCGCNGCGC 1 cut(s) 294
MvaI CCWGG 2 cut(s) 70, 316
MvnI CGCG 1 cut(s) 293
MwoI GCNNNNNNNGC 3 cut(s) 280, 293, 425
NciI CCSGG 2 cut(s) 75, 131
NdeII GATC 3 cut(s) 212, 217, 433
NlaIV GGNNCC 3 cut(s) 156, 190, 326
NmeAIII GCCGAG 1 cut(s) 171
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PdmI GAANNNNTTC 2 cut(s) 263, 323
PfeI GAWTC 1 cut(s) 22
PflFI GACNNNGTC 1 cut(s) 172
PfoI TCCNGGA 1 cut(s) 314
PkrI GCNGC 6 cut(s) 128, 228, 276, 295, 300, 388
PleI GAGTC 2 cut(s) 145, 346
PpsI GAGTC 2 cut(s) 145, 346
PshAI GACNNNNGTC 1 cut(s) 356
Psp6I CCWGG 2 cut(s) 68, 314
PspFI CCCAGC 1 cut(s) 402
PspGI CCWGG 2 cut(s) 68, 314
PspN4I GGNNCC 3 cut(s) 156, 190, 326
PspPI GGNCC 4 cut(s) 93, 154, 189, 400
PsuI RGATCY 1 cut(s) 212
PsyI GACNNNGTC 1 cut(s) 172
RsaI GTAC 3 cut(s) 209, 311, 332
RsaNI GTAC 3 cut(s) 208, 310, 331
SatI GCNGC 6 cut(s) 127, 227, 275, 294, 299, 387
Sau3AI GATC 3 cut(s) 212, 217, 433
Sau96I GGNCC 4 cut(s) 93, 154, 189, 400
SchI GAGTC 2 cut(s) 146, 346
ScrFI CCNGG 4 cut(s) 70, 75, 131, 316
SduI GDGCHC 1 cut(s) 110
SetI ASST 7 cut(s) 30, 55, 62, 183, 264, 348, 408
SinI GGWCC 3 cut(s) 93, 154, 189
SsiI CCGC 3 cut(s) 158, 293, 386
SspMI CTAG 3 cut(s) 50, 270, 442
StyD4I CCNGG 4 cut(s) 68, 73, 129, 314
StyI CCWWGG 2 cut(s) 177, 269
TaaI ACNGT 2 cut(s) 172, 207
TaiI ACGT 1 cut(s) 264
TaqI TCGA 1 cut(s) 167
TauI GCSGC 2 cut(s) 296, 389
TfiI GAWTC 1 cut(s) 22
TseI GCWGC 4 cut(s) 126, 226, 274, 298
Tth111I GACNNNGTC 1 cut(s) 172
VneI GTGCAC 1 cut(s) 106
VpaK11BI GGWCC 3 cut(s) 93, 154, 189
XmaJI CCTAGG 1 cut(s) 269
XmnI GAANNNNTTC 2 cut(s) 263, 323
XspI CTAG 3 cut(s) 50, 270, 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.