Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002467

Physical Location & Seq

Genomic Coordinates Forward (+)

31314159 .. 31320515

Gene Structure 6357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0194200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGCAAGCGAAATCTTGTGACGCACATCCACCGGATGTGATAACCTGCAAAATGAGTAAGGAGCCAAATGACTCTCTGGCAATAGTCAGTGGCACGCCATTCGATTTCTTGGGTGTTTTCTGCGATAGTGTCATAGCTGGTGGTGCTGCTGGTGTTGTTGTGGAAGCTGCATTATACCCAATTGACACGATAAAAACTCGATTGCAGGTTGCTCATGCCGGAGGAAAAATTATGTTGAAGGGTCTATATTCGGGATTGGCTGGAAACCTTGCTGGTGTTTTACCGGCTTCTGCTATATTTGTTGGTGTATATGAACCTACAAAGCAGAAATTGCTGAAGTCACTCCCAGAAAATCTCAGTGCTTTAGCTCATTTGACTGCAGGTGCTATTGGAGGTGCTGCTTCTTCTATTGTACGAGTGCCAACAGAGGTTGTCAAGCAAAGGATGCAAACTGCGCAATTTGCTTCTGCCCCAGATGCTGTTCGCCTTATTCTTGCTAAAGAGGGTTTCAAAGGTCTTTATGCGGGGTACGGATCATTCCTATTGCGAGATTTACCATTTGATGCAGTTCAGTTTTGCATCTATGAGCAACTTCACATAGGGTTTAAACTAGCGGCACGAAGAGATCTGAACGACCCTGAGGTTGCTATGATTGGTGCTTTTGCTGGTGCAATAACTGGGGCTATAACTACTCCTCTTGATGTGATAAAAACAAGATTAATGGTTCAGGGATCAGAAAACCAGTACCAAGGAATTTGTGACTGTGTTAGGACCATAATGAGAGAAGAAGGAAGTCCTGCTTTCTGGAAGGGCATTGGGCCACGAGTACTGTGGATAGGTATCGGAGGTTCAATTTTCTTTGGAGTTCTTGAAAGAACGAAGCAAATACTTGAGCAGAGGCGCATCAGGGATCAGGAGTCCAAGCGTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0005759 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015440 GO:0015450 GO:0015462 GO:0015833 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017038 GO:0017111 GO:0019866 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0032991 GO:0033036 GO:0033220 GO:0033365 GO:0034613 GO:0042623 GO:0042626 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098796 GO:0098798 GO:0098800 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim44

Protein Analysis

310

Amino Acids

33.25

Weight (kDa)

8.83

Isoelectric Point (pI)

33.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	42 - 113	5.1e-11	Mitochondrial carrier protein
Mito_carr	PF00153	118 - 199	1.5e-18	Mitochondrial carrier protein
Mito_carr	PF00153	216 - 299	3.8e-24	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20510 AT2G20510 AT2G20510 AT2G20510 AT2G36070
fragaria_vesca	FvH4_2g21470 FvH4_2g21470 FvH4_4g12040 FvH4_4g12040 FvH4_4g12040 FvH4_4g12040
malus_domestica	MD05G1197100.v1.1 MD09G1008600.v1.1
prunus_persica	Prupe.8G223600_v2.0.a1
pyrus_communis	pycom05g18420 pycom10g15910
rosa_chinensis	RchiOBHm_Chr4g0409381 RchiOBHm_Chr5g0013581 RchiOBHm_Chr6g0288111
rosa_laevigata	RLG00000012438 RLG00000032032
rosa_multiflora	Rmu_co8365065.1_g000001 Rmu_sc0001616.1_g000049 Rmu_sc0001851.1_g000030 Rmu_sc0010766.1_g000003
rosa_roxburghii	Rroxscaffold_1G00062990 Rroxscaffold_5G00353910 Rroxscaffold_7G00180510
rosa_rugosa	Rorug04G0093400 Rorug06G0194200
rosa_samantha	Rh4AG155900 Rh4BG155100 Rh4CG165200 Rh4DG149000 Rh5BG102300 Rh6AG304400 Rh6BG310400 Rh6CG318500 Rh6DG303400
rosa_wichuraiana	Rw4G012760 Rw6G026340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	371
Acc16I	TGCGCA	1 cut(s)	456
Acc36I	ACCTGC	3 cut(s)	53, 196, 371
AciI	CCGC	2 cut(s)	524, 614
AclWI	GGATC	3 cut(s)	541, 739, 918
AcsI	RAATTY	1 cut(s)	753
AcuI	CTGAAG	1 cut(s)	356
AfaI	GTAC	4 cut(s)	414, 530, 746, 828
AgsI	TTSAA	4 cut(s)	238, 511, 852, 872
AluBI	AGCT	3 cut(s)	137, 167, 368
AluI	AGCT	3 cut(s)	137, 167, 368
AlwI	GGATC	3 cut(s)	541, 739, 918
AlwNI	CAGNNNCTG	1 cut(s)	479
AoxI	GGCC	1 cut(s)	818
ApeKI	GCWGC	3 cut(s)	146, 167, 398
ApoI	RAATTY	1 cut(s)	753
AseI	ATTAAT	1 cut(s)	719
AspLEI	GCGC	2 cut(s)	457, 903
AspS9I	GGNCC	2 cut(s)	771, 818
AvaII	GGWCC	1 cut(s)	771
AxyI	CCTNAGG	1 cut(s)	639
BauI	CACGAG	1 cut(s)	822
BbvI	GCAGC	3 cut(s)	133, 154, 385
BcgI	CGANNNNNNTGC	2 cut(s)	82, 116
BfaI	CTAG	1 cut(s)	611
BfmI	CTRYAG	1 cut(s)	378
BfuAI	ACCTGC	3 cut(s)	53, 196, 371
BglII	AGATCT	1 cut(s)	625
BisI	GCNGC	4 cut(s)	147, 168, 399, 615
BlsI	GCNGC	4 cut(s)	148, 169, 400, 616
BmcAI	AGTACT	1 cut(s)	828
Bme18I	GGWCC	1 cut(s)	771
BmgT120I	GGNCC	2 cut(s)	771, 818
BmiI	GGNNCC	1 cut(s)	63
BmrI	ACTGGG	1 cut(s)	687
BmsI	GCATC	5 cut(s)	435, 466, 553, 588, 912
BmuI	ACTGGG	1 cut(s)	687
BpuEI	CTTGAG	1 cut(s)	911
BsaBI	GATNNNNATC	1 cut(s)	839
BsaJI	CCNNGG	1 cut(s)	748
BsaWI	WCCGGW	1 cut(s)	31
Bse118I	RCCGGY	1 cut(s)	283
Bse1I	ACTGG	2 cut(s)	682, 742
Bse21I	CCTNAGG	1 cut(s)	639
Bse8I	GATNNNNATC	1 cut(s)	839
BseDI	CCNNGG	1 cut(s)	748
BseGI	GGATG	3 cut(s)	25, 40, 450
BseJI	GATNNNNATC	1 cut(s)	839
BseMII	CTCAG	2 cut(s)	370, 630
BseNI	ACTGG	2 cut(s)	682, 742
BseRI	GAGGAG	1 cut(s)	684
BseXI	GCAGC	3 cut(s)	133, 154, 385
BshFI	GGCC	1 cut(s)	820
BsiSI	CCGG	3 cut(s)	32, 219, 284
BsnI	GGCC	1 cut(s)	820
Bsp143I	GATC	4 cut(s)	533, 625, 731, 910
BspACI	CCGC	2 cut(s)	524, 614
BspANI	GGCC	1 cut(s)	820
BspCNI	CTCAG	2 cut(s)	369, 631
BspLI	GGNNCC	1 cut(s)	63
BspMAI	CTGCAG	1 cut(s)	382
BspMI	ACCTGC	3 cut(s)	53, 196, 371
BspPI	GGATC	3 cut(s)	541, 739, 918
BsrFI	RCCGGY	1 cut(s)	283
BsrI	ACTGG	2 cut(s)	682, 742
BssAI	RCCGGY	1 cut(s)	283
BssECI	CCNNGG	1 cut(s)	748
BssMI	GATC	4 cut(s)	533, 625, 731, 910
BssSI	CACGAG	1 cut(s)	822
BssT1I	CCWWGG	1 cut(s)	748
Bst2BI	CACGAG	1 cut(s)	822
Bst4CI	ACNGT	2 cut(s)	764, 831
Bst6I	CTCTTC	1 cut(s)	616
BstAPI	GCANNNNNTGC	2 cut(s)	331, 445
BstC8I	GCNNGC	2 cut(s)	6, 95
BstDEI	CTNAG	2 cut(s)	356, 639
BstF5I	GGATG	3 cut(s)	25, 40, 450
BstHHI	GCGC	2 cut(s)	457, 903
BstKTI	GATC	4 cut(s)	536, 628, 734, 913
BstMBI	GATC	4 cut(s)	533, 625, 731, 910
BstMWI	GCNNNNNNNGC	6 cut(s)	143, 331, 445, 454, 461, 476
BstSFI	CTRYAG	1 cut(s)	378
BstV1I	GCAGC	3 cut(s)	133, 154, 385
BstX2I	RGATCY	1 cut(s)	625
BstYI	RGATCY	1 cut(s)	625
Bsu36I	CCTNAGG	1 cut(s)	639
BsuRI	GGCC	1 cut(s)	820
BtsCI	GGATG	3 cut(s)	25, 40, 450
BtsIMutI	CAGTG	2 cut(s)	94, 364
BveI	ACCTGC	3 cut(s)	53, 196, 371
Cac8I	GCNNGC	2 cut(s)	6, 95
CaiI	CAGNNNCTG	1 cut(s)	479
CfoI	GCGC	2 cut(s)	457, 903
Cfr10I	RCCGGY	1 cut(s)	283
Cfr13I	GGNCC	2 cut(s)	771, 818
CseI	GACGC	1 cut(s)	29
Csp6I	GTAC	4 cut(s)	413, 529, 745, 827
CviAII	CATG	1 cut(s)	215
CviJI	RGCY	8 cut(s)	64, 137, 167, 260, 287, 368, 683, 820
CviKI_1	RGCY	8 cut(s)	64, 137, 167, 260, 287, 368, 683, 820
CviQI	GTAC	4 cut(s)	413, 529, 745, 827
DdeI	CTNAG	2 cut(s)	356, 639
DpnI	GATC	4 cut(s)	535, 627, 733, 912
DpnII	GATC	4 cut(s)	533, 625, 731, 910
DraI	TTTAAA	1 cut(s)	607
Eam1104I	CTCTTC	1 cut(s)	616
EarI	CTCTTC	1 cut(s)	616
Eco130I	CCWWGG	1 cut(s)	748
Eco47I	GGWCC	1 cut(s)	771
Eco57I	CTGAAG	1 cut(s)	356
Eco81I	CCTNAGG	1 cut(s)	639
EcoT14I	CCWWGG	1 cut(s)	748
ErhI	CCWWGG	1 cut(s)	748
FaeI	CATG	1 cut(s)	218
FalI	AAGNNNNNCTT	2 cut(s)	784, 816
FatI	CATG	1 cut(s)	214
FauI	CCCGC	1 cut(s)	517
Fnu4HI	GCNGC	4 cut(s)	147, 168, 399, 615
FokI	GGATG	3 cut(s)	12, 47, 457
Fsp4HI	GCNGC	4 cut(s)	147, 168, 399, 615
FspBI	CTAG	1 cut(s)	611
FspI	TGCGCA	1 cut(s)	456
GlaI	GCGC	2 cut(s)	456, 902
GluI	GCNGC	4 cut(s)	147, 168, 399, 615
HaeIII	GGCC	1 cut(s)	820
HapII	CCGG	3 cut(s)	32, 219, 284
HgaI	GACGC	1 cut(s)	29
HhaI	GCGC	2 cut(s)	457, 903
Hin1II	CATG	1 cut(s)	218
Hin6I	GCGC	2 cut(s)	455, 901
HinP1I	GCGC	2 cut(s)	455, 901
HinfI	GANTC	2 cut(s)	71, 917
HpaII	CCGG	3 cut(s)	32, 219, 284
Hpy188I	TCNGA	3 cut(s)	630, 736, 845
Hpy188III	TCNNGA	5 cut(s)	252, 698, 805, 869, 914
HpyAV	CCTTC	3 cut(s)	232, 782, 802
HpyCH4III	ACNGT	2 cut(s)	764, 831
HpyCH4V	TGCA	9 cut(s)	4, 48, 170, 205, 380, 448, 566, 579, 671
HpyF10VI	GCNNNNNNNGC	6 cut(s)	143, 331, 445, 454, 461, 476
HpyF3I	CTNAG	2 cut(s)	356, 639
Hsp92II	CATG	1 cut(s)	218
HspAI	GCGC	2 cut(s)	455, 901
Kzo9I	GATC	4 cut(s)	533, 625, 731, 910
LmnI	GCTCC	1 cut(s)	61
Lsp1109I	GCAGC	3 cut(s)	133, 154, 385
LweI	GCATC	5 cut(s)	435, 466, 553, 588, 912
MaeI	CTAG	1 cut(s)	611
MaeIII	GTNAC	4 cut(s)	17, 339, 758, 926
MalI	GATC	4 cut(s)	535, 627, 733, 912
MboI	GATC	4 cut(s)	533, 625, 731, 910
MboII	GAAGA	3 cut(s)	396, 633, 797
MfeI	CAATTG	1 cut(s)	180
MflI	RGATCY	1 cut(s)	625
MluCI	AATT	6 cut(s)	180, 228, 329, 458, 753, 852
MlyI	GAGTC	2 cut(s)	65, 926
MnlI	CCTC	8 cut(s)	215, 386, 421, 496, 634, 705, 839, 891
MseI	TTAA	2 cut(s)	606, 719
MspI	CCGG	3 cut(s)	32, 219, 284
MssI	GTTTAAAC	1 cut(s)	607
MunI	CAATTG	1 cut(s)	180
MwoI	GCNNNNNNNGC	6 cut(s)	143, 331, 445, 454, 461, 476
NdeII	GATC	4 cut(s)	533, 625, 731, 910
NlaIII	CATG	1 cut(s)	218
NlaIV	GGNNCC	1 cut(s)	63
NmuCI	GTSAC	3 cut(s)	17, 339, 758
NsbI	TGCGCA	1 cut(s)	456
PaqCI	CACCTGC	1 cut(s)	371
PkrI	GCNGC	4 cut(s)	148, 169, 400, 616
PleI	GAGTC	2 cut(s)	65, 925
PmeI	GTTTAAAC	1 cut(s)	607
PpsI	GAGTC	2 cut(s)	65, 925
PshBI	ATTAAT	1 cut(s)	719
PspN4I	GGNNCC	1 cut(s)	63
PspPI	GGNCC	2 cut(s)	771, 818
PsrI	GAACNNNNNNTAC	2 cut(s)	832, 864
PstI	CTGCAG	1 cut(s)	382
PstNI	CAGNNNCTG	1 cut(s)	479
PsuI	RGATCY	1 cut(s)	625
RsaI	GTAC	4 cut(s)	414, 530, 746, 828
RsaNI	GTAC	4 cut(s)	413, 529, 745, 827
SaqAI	TTAA	2 cut(s)	606, 719
SatI	GCNGC	4 cut(s)	147, 168, 399, 615
Sau3AI	GATC	4 cut(s)	533, 625, 731, 910
Sau96I	GGNCC	2 cut(s)	771, 818
ScaI	AGTACT	1 cut(s)	828
SchI	GAGTC	2 cut(s)	65, 926
SfaNI	GCATC	5 cut(s)	435, 466, 553, 588, 912
SfcI	CTRYAG	1 cut(s)	378
SinI	GGWCC	1 cut(s)	771
SmlI	CTYRAG	1 cut(s)	890
SmoI	CTYRAG	1 cut(s)	890
Sse9I	AATT	6 cut(s)	180, 228, 329, 458, 753, 852
SsiI	CCGC	2 cut(s)	524, 614
SspMI	CTAG	1 cut(s)	611
StyI	CCWWGG	1 cut(s)	748
TaaI	ACNGT	2 cut(s)	764, 831
TaqI	TCGA	2 cut(s)	102, 199
TasI	AATT	6 cut(s)	180, 228, 329, 458, 753, 852
TatI	WGTACW	1 cut(s)	826
TauI	GCSGC	1 cut(s)	617
Tru1I	TTAA	2 cut(s)	606, 719
Tru9I	TTAA	2 cut(s)	606, 719
TscAI	CASTG	2 cut(s)	94, 364
TseFI	GTSAC	3 cut(s)	17, 339, 758
TseI	GCWGC	3 cut(s)	146, 167, 398
Tsp45I	GTSAC	3 cut(s)	17, 339, 758
TspDTI	ATGAA	1 cut(s)	327
TspGWI	ACGGA	1 cut(s)	546
TspRI	CASTG	2 cut(s)	94, 364
VpaK11BI	GGWCC	1 cut(s)	771
VspI	ATTAAT	1 cut(s)	719
XapI	RAATTY	1 cut(s)	753
XcmI	CCANNNNNNNNNTGG	1 cut(s)	828
XspI	CTAG	1 cut(s)	611
ZrmI	AGTACT	1 cut(s)	828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.