FvH4_2g21470

Mitochondrial import inner membrane translocase subunit

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
17839292 .. 17844027
4736 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g21470.t1

Sequence Viewer

Length: 1449 bp
ATGGCTGGTAGAAAGCTTGTTCGAGATTTGTTCCTCCACAGACAATCCCTTGTTCTTCGGTCTCAACAACAGGCTTCAGGCACGAATATTCGATTGCTTTCGGCAAATGGGTATTCCGGGAATCGTCGATTCAGTGTCTTCAATGAGTTTTCCAAGCAGGTCAAGGAGGAAACCAATAAGAATCCACATTTTAAAAAGACGGTCAAGGAGCTGAAGAAGCAAGTGGAAGAGCTCAAGGGAGTGAAAGAAGATCTGAAAGTTAGAACAAAGCAGACAACGGAGCAGCTATACAAGCAGGTGGATGGTGCTTGGACGGAGGCTGAAGCAACAGCAAAGAAGGTCTCAGCAAATGTAAAAGAGAAGTTCTCGGCTGCCACAGAAGAGGTCAAAGAATCTTTTGGAATAGGGAAAGAGCAGGCTTCAGGGCCTTCTCGTGCTTCAGCTGACCATGTTGCTGATGAGAAAGGTGGAAGCAAGGCCTCATCCACTGAAGATAAACACCAGCACTCAGGGGCTAGTGATACTGCAGAAACATTATTTGGAAAATTTAGGTCAAAGGTCTCTTCATCAAATGTTTCCTCTGTCTTGAATAGATTCAAGGAAGCCAAGTTTGTTGACATGGCCAAAAGAGGATATGAAATTGTAAAGGATGAGTTAAATGGTAGTCAAAGTAGGAAAAAGCATCTAGGGTTTGATCCTTCTTCCATCCCACGAGTTGAGAGAAGTGCAACAAGTGACATTGCTATTGTACCCACCAAACAATCTCCTTGGAGCAAAAAGTGGGAGGCTTTCAAAATGAAGATGCAAGGGAATCCTCTATTCAAGCATATCAGTGGGATAAGTGAACCTGTTAAAATAAAAGGCGAAGAGATCATTGATGACATGAAGGAACGCTGGGAAAATTCTGATAGCCCAATTGTTCACAAAATTCAGGATATCAATGAAAGTATTTTTCAAGAAACAAATGCTGCAGCATCAATCAAGGAGATCCATGCCCGAGATCCATCTTTCTCTTTACCAGATTTTGTGGAAGAAGTTCAGAATGCGGTCAAACCTGTGTTAAATGCTTACATGAAGGGAGATATTGAAACATTGAAGAAGTACTGTGCTAATGAGGTGATTGAGCGGTGTAAAGCCGAGCGTCAGGCTTATCAAAGCCATGATATCTTTTTTGATAACAAGATTCTACATATATCTGATGTGCAAGTCGTAGAAACCAAACTGATTGGAGAGTCTCCTGTAATCATTGTCCGGTTCCAAACACAGCAAATCTATTGTGTGCGTGATAAAAATGGAGCAATAACAGATGGCAGCCAGGATACGATCCAGACTGTGATCTATGGCTGGGCCATGCAACCTTGGGATCCTGAAGAACTTCCTGAAGGTGCTCTTTTCCCAATATGGAGAGTAAGAGAGATTCAACAATTTAGAATGCTGTCACTTATATAG

Protein Analysis

483

Amino Acids

54.53

Weight (kDa)

8.84

Isoelectric Point (pI)

43.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tim44 PF04280 324 - 475 7.9e-39 Tim44-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 286
Acc36I ACCTGC 2 cut(s) 148, 286
AccBSI CCGCTC 1 cut(s) 1126
AciI CCGC 2 cut(s) 1046, 1126
AclWI GGATC 6 cut(s) 689, 982, 995, 1318, 1358, 1371
AcoI YGGCCR 1 cut(s) 621
AcsI RAATTY 3 cut(s) 545, 901, 927
AcuI CTGAAG 8 cut(s) 60, 233, 342, 405, 423, 510, 1389, 1401
AfaI GTAC 2 cut(s) 750, 1103
AgsI TTSAA 9 cut(s) 142, 589, 598, 793, 823, 956, 1088, 1096, 1421
AjnI CCWGG 1 cut(s) 1314
AjuI GAANNNNNNNTTGG 2 cut(s) 522, 554
AluBI AGCT 5 cut(s) 16, 211, 232, 286, 443
AluI AGCT 5 cut(s) 16, 211, 232, 286, 443
Alw21I GWGCWC 2 cut(s) 234, 1390
Alw26I GTCTC 4 cut(s) 66, 346, 565, 1239
AlwI GGATC 6 cut(s) 689, 982, 995, 1318, 1358, 1371
Ama87I CYCGRG 1 cut(s) 996
AoxI GGCC 4 cut(s) 425, 477, 621, 1347
ApeKI GCWGC 5 cut(s) 283, 371, 968, 971, 1311
ApoI RAATTY 3 cut(s) 545, 901, 927
Asp700I GAANNNNTTC 3 cut(s) 593, 1035, 1374
AspS9I GGNCC 2 cut(s) 425, 1347
AsuC2I CCSGG 1 cut(s) 118
AsuHPI GGTGA 1 cut(s) 1129
AvaI CYCGRG 1 cut(s) 996
BalI TGGCCA 1 cut(s) 623
BamHI GGATCC 1 cut(s) 1363
BanII GRGCYC 1 cut(s) 234
BauI CACGAG 2 cut(s) 432, 711
BbsI GAAGAC 1 cut(s) 130
Bbv12I GWGCWC 2 cut(s) 234, 1390
BbvI GCAGC 5 cut(s) 295, 358, 955, 983, 1323
BccI CCATC 4 cut(s) 296, 713, 1012, 1301
BciT130I CCWGG 1 cut(s) 1316
BciVI GTATCC 1 cut(s) 1312
BcnI CCSGG 1 cut(s) 118
BcoDI GTCTC 4 cut(s) 66, 346, 565, 1239
BfaI CTAG 2 cut(s) 516, 686
BfmI CTRYAG 2 cut(s) 525, 969
BfuAI ACCTGC 2 cut(s) 148, 286
BfuI GTATCC 1 cut(s) 1312
BglII AGATCT 1 cut(s) 250
BisI GCNGC 5 cut(s) 284, 372, 969, 972, 1312
BlsI GCNGC 5 cut(s) 285, 373, 970, 973, 1313
BmcAI AGTACT 1 cut(s) 1103
Bme1390I CCNGG 2 cut(s) 118, 1316
BmeT110I CYCGRG 1 cut(s) 996
BmgT120I GGNCC 2 cut(s) 425, 1347
BmiI GGNNCC 2 cut(s) 1256, 1365
BmrFI CCNGG 2 cut(s) 118, 1316
BmsI GCATC 3 cut(s) 691, 792, 983
BpiI GAAGAC 1 cut(s) 130
BplI GAGNNNNNCTC 2 cut(s) 350, 382
BpuEI CTTGAG 1 cut(s) 218
BpuMI CCSGG 1 cut(s) 118
BsaI GGTCTC 3 cut(s) 66, 346, 565
BsaJI CCNNGG 2 cut(s) 767, 1358
BsaWI WCCGGW 1 cut(s) 1251
Bse3DI GCAATG 1 cut(s) 738
BseBI CCWGG 1 cut(s) 1316
BseDI CCNNGG 2 cut(s) 767, 1358
BseGI GGATG 4 cut(s) 307, 482, 655, 705
BseMI GCAATG 1 cut(s) 738
BseMII CTCAG 2 cut(s) 357, 522
BseXI GCAGC 5 cut(s) 295, 358, 955, 983, 1323
BseYI CCCAGC 2 cut(s) 894, 1344
BshFI GGCC 4 cut(s) 427, 479, 623, 1349
BsiHKAI GWGCWC 2 cut(s) 234, 1390
BsiHKCI CYCGRG 1 cut(s) 996
BsiSI CCGG 2 cut(s) 117, 1252
BsmAI GTCTC 4 cut(s) 66, 346, 565, 1239
BsmI GAATGC 2 cut(s) 1048, 1437
BsnI GGCC 4 cut(s) 427, 479, 623, 1349
Bso31I GGTCTC 3 cut(s) 66, 346, 565
BsoBI CYCGRG 1 cut(s) 996
Bsp1286I GDGCHC 2 cut(s) 234, 1390
Bsp143I GATC 8 cut(s) 250, 694, 870, 987, 1000, 1323, 1335, 1363
BspACI CCGC 2 cut(s) 1046, 1126
BspANI GGCC 4 cut(s) 427, 479, 623, 1349
BspCNI CTCAG 2 cut(s) 356, 521
BspLI GGNNCC 2 cut(s) 1256, 1365
BspMAI CTGCAG 2 cut(s) 529, 973
BspMI ACCTGC 2 cut(s) 148, 286
BspPI GGATC 6 cut(s) 689, 982, 995, 1318, 1358, 1371
BspQI GCTCTTC 1 cut(s) 222
BspTNI GGTCTC 3 cut(s) 66, 346, 565
BsrBI CCGCTC 1 cut(s) 1126
BsrDI GCAATG 1 cut(s) 738
BssECI CCNNGG 2 cut(s) 767, 1358
BssMI GATC 8 cut(s) 250, 694, 870, 987, 1000, 1323, 1335, 1363
BssSI CACGAG 2 cut(s) 432, 711
BssT1I CCWWGG 2 cut(s) 767, 1358
Bst2BI CACGAG 2 cut(s) 432, 711
Bst2UI CCWGG 1 cut(s) 1316
Bst4CI ACNGT 3 cut(s) 202, 1106, 1333
Bst6I CTCTTC 4 cut(s) 222, 375, 568, 861
BstC8I GCNNGC 1 cut(s) 417
BstDEI CTNAG 2 cut(s) 343, 508
BstF5I GGATG 4 cut(s) 307, 482, 655, 705
BstKTI GATC 8 cut(s) 253, 697, 873, 990, 1003, 1326, 1338, 1366
BstMAI GTCTC 4 cut(s) 66, 346, 565, 1239
BstMBI GATC 8 cut(s) 250, 694, 870, 987, 1000, 1323, 1335, 1363
BstMWI GCNNNNNNNGC 2 cut(s) 217, 292
BstNI CCWGG 1 cut(s) 1316
BstSCI CCNGG 2 cut(s) 116, 1314
BstSFI CTRYAG 2 cut(s) 525, 969
BstV1I GCAGC 5 cut(s) 295, 358, 955, 983, 1323
BstV2I GAAGAC 1 cut(s) 130
BstX2I RGATCY 4 cut(s) 250, 987, 1000, 1363
BstYI RGATCY 4 cut(s) 250, 987, 1000, 1363
BsuI GTATCC 1 cut(s) 1312
BsuRI GGCC 4 cut(s) 427, 479, 623, 1349
BtsCI GGATG 4 cut(s) 307, 482, 655, 705
BtsIMutI CAGTG 3 cut(s) 139, 486, 838
BveI ACCTGC 2 cut(s) 148, 286
Cac8I GCNNGC 1 cut(s) 417
Cfr13I GGNCC 2 cut(s) 425, 1347
CseI GACGC 1 cut(s) 1130
Csp6I GTAC 2 cut(s) 749, 1102
CviAII CATG 7 cut(s) 449, 619, 883, 992, 1072, 1160, 1351
CviQI GTAC 2 cut(s) 749, 1102
DdeI CTNAG 2 cut(s) 343, 508
DpnI GATC 8 cut(s) 252, 696, 872, 989, 1002, 1325, 1337, 1365
DpnII GATC 8 cut(s) 250, 694, 870, 987, 1000, 1323, 1335, 1363
DraI TTTAAA 1 cut(s) 193
EaeI YGGCCR 1 cut(s) 621
Eam1104I CTCTTC 4 cut(s) 222, 375, 568, 861
EarI CTCTTC 4 cut(s) 222, 375, 568, 861
Ecl136II GAGCTC 1 cut(s) 232
Eco130I CCWWGG 2 cut(s) 767, 1358
Eco147I AGGCCT 1 cut(s) 479
Eco24I GRGCYC 1 cut(s) 234
Eco31I GGTCTC 3 cut(s) 66, 346, 565
Eco32I GATATC 2 cut(s) 937, 1165
Eco53kI GAGCTC 1 cut(s) 232
Eco57I CTGAAG 8 cut(s) 60, 233, 342, 405, 423, 510, 1389, 1401
Eco88I CYCGRG 1 cut(s) 996
EcoICRI GAGCTC 1 cut(s) 232
EcoO109I RGGNCCY 1 cut(s) 425
EcoRII CCWGG 1 cut(s) 1314
EcoRV GATATC 2 cut(s) 937, 1165
EcoT14I CCWWGG 2 cut(s) 767, 1358
EcoT38I GRGCYC 1 cut(s) 234
ErhI CCWWGG 2 cut(s) 767, 1358
FaeI CATG 7 cut(s) 452, 622, 886, 995, 1075, 1163, 1354
FalI AAGNNNNNCTT 2 cut(s) 1374, 1406
FatI CATG 7 cut(s) 448, 618, 882, 991, 1071, 1159, 1350
Fnu4HI GCNGC 5 cut(s) 284, 372, 969, 972, 1312
FokI GGATG 4 cut(s) 314, 469, 662, 692
FriOI GRGCYC 1 cut(s) 234
Fsp4HI GCNGC 5 cut(s) 284, 372, 969, 972, 1312
FspBI CTAG 2 cut(s) 516, 686
GluI GCNGC 5 cut(s) 284, 372, 969, 972, 1312
GsaI CCCAGC 2 cut(s) 898, 1348
HaeIII GGCC 4 cut(s) 427, 479, 623, 1349
HapII CCGG 2 cut(s) 117, 1252
HgaI GACGC 1 cut(s) 1130
Hin1II CATG 7 cut(s) 452, 622, 886, 995, 1075, 1163, 1354
HincII GTYRAC 1 cut(s) 616
HindII GTYRAC 1 cut(s) 616
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 9 cut(s) 121, 129, 181, 392, 594, 811, 1183, 1232, 1417
HpaII CCGG 2 cut(s) 117, 1252
HphI GGTGA 1 cut(s) 1129
Hpy166II GTNNAC 3 cut(s) 616, 845, 922
Hpy188I TCNGA 4 cut(s) 255, 907, 1041, 1198
Hpy188III TCNNGA 7 cut(s) 23, 586, 932, 956, 1327, 1367, 1379
Hpy8I GTNNAC 3 cut(s) 616, 845, 922
Hpy99I CGWCG 1 cut(s) 129
HpyAV CCTTC 6 cut(s) 331, 438, 708, 880, 1069, 1376
HpyCH4III ACNGT 3 cut(s) 202, 1106, 1333
HpyCH4V TGCA 6 cut(s) 527, 728, 805, 971, 1204, 1354
HpyF10VI GCNNNNNNNGC 2 cut(s) 217, 292
HpyF3I CTNAG 2 cut(s) 343, 508
Hsp92II CATG 7 cut(s) 452, 622, 886, 995, 1075, 1163, 1354
Kzo9I GATC 8 cut(s) 250, 694, 870, 987, 1000, 1323, 1335, 1363
LguI GCTCTTC 1 cut(s) 222
LmnI GCTCC 4 cut(s) 208, 280, 771, 1295
Lsp1109I GCAGC 5 cut(s) 295, 358, 955, 983, 1323
LweI GCATC 3 cut(s) 691, 792, 983
MaeI CTAG 2 cut(s) 516, 686
MaeIII GTNAC 2 cut(s) 734, 1437
MalI GATC 8 cut(s) 252, 696, 872, 989, 1002, 1325, 1337, 1365
MbiI CCGCTC 1 cut(s) 1126
MboI GATC 8 cut(s) 250, 694, 870, 987, 1000, 1323, 1335, 1363
MfeI CAATTG 1 cut(s) 915
MflI RGATCY 4 cut(s) 250, 987, 1000, 1363
MhlI GDGCHC 2 cut(s) 234, 1390
MlsI TGGCCA 1 cut(s) 623
MluCI AATT 6 cut(s) 545, 639, 901, 915, 927, 1424
MluNI TGGCCA 1 cut(s) 623
MlyI GAGTC 1 cut(s) 1241
Mox20I TGGCCA 1 cut(s) 623
MroXI GAANNNNTTC 3 cut(s) 593, 1035, 1374
MscI TGGCCA 1 cut(s) 623
MseI TTAA 4 cut(s) 192, 656, 852, 1061
MslI CAYNNNNRTG 1 cut(s) 831
Msp20I TGGCCA 1 cut(s) 623
MspA1I CMGCKG 1 cut(s) 443
MspI CCGG 2 cut(s) 117, 1252
MspR9I CCNGG 2 cut(s) 118, 1316
MunI CAATTG 1 cut(s) 915
Mva1269I GAATGC 2 cut(s) 1048, 1437
MvaI CCWGG 1 cut(s) 1316
MwoI GCNNNNNNNGC 2 cut(s) 217, 292
NciI CCSGG 1 cut(s) 118
NdeII GATC 8 cut(s) 250, 694, 870, 987, 1000, 1323, 1335, 1363
NlaIII CATG 7 cut(s) 452, 622, 886, 995, 1075, 1163, 1354
NlaIV GGNNCC 2 cut(s) 1256, 1365
NmeAIII GCCGAG 2 cut(s) 347, 1162
NmuCI GTSAC 2 cut(s) 734, 1437
PaqCI CACCTGC 1 cut(s) 286
PceI AGGCCT 1 cut(s) 479
PciSI GCTCTTC 1 cut(s) 222
PctI GAATGC 2 cut(s) 1048, 1437
PdmI GAANNNNTTC 3 cut(s) 593, 1035, 1374
PfeI GAWTC 8 cut(s) 121, 129, 181, 392, 594, 811, 1183, 1417
PfoI TCCNGGA 1 cut(s) 116
PkrI GCNGC 5 cut(s) 285, 373, 970, 973, 1313
PleI GAGTC 1 cut(s) 1240
PpsI GAGTC 1 cut(s) 1240
Psp124BI GAGCTC 1 cut(s) 234
Psp6I CCWGG 1 cut(s) 1314
PspFI CCCAGC 2 cut(s) 894, 1344
PspGI CCWGG 1 cut(s) 1314
PspN4I GGNNCC 2 cut(s) 1256, 1365
PspPI GGNCC 2 cut(s) 425, 1347
PstI CTGCAG 2 cut(s) 529, 973
PsuI RGATCY 4 cut(s) 250, 987, 1000, 1363
PvuII CAGCTG 1 cut(s) 443
RsaI GTAC 2 cut(s) 750, 1103
RsaNI GTAC 2 cut(s) 749, 1102
RseI CAYNNNNRTG 1 cut(s) 831
SacI GAGCTC 1 cut(s) 234
SapI GCTCTTC 1 cut(s) 222
SaqAI TTAA 4 cut(s) 192, 656, 852, 1061
SatI GCNGC 5 cut(s) 284, 372, 969, 972, 1312
Sau3AI GATC 8 cut(s) 250, 694, 870, 987, 1000, 1323, 1335, 1363
Sau96I GGNCC 2 cut(s) 425, 1347
ScaI AGTACT 1 cut(s) 1103
SchI GAGTC 1 cut(s) 1241
ScrFI CCNGG 2 cut(s) 118, 1316
SduI GDGCHC 2 cut(s) 234, 1390
SfaNI GCATC 3 cut(s) 691, 792, 983
SfcI CTRYAG 2 cut(s) 525, 969
SmiMI CAYNNNNRTG 1 cut(s) 831
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
Sse9I AATT 6 cut(s) 545, 639, 901, 915, 927, 1424
SseBI AGGCCT 1 cut(s) 479
SsiI CCGC 2 cut(s) 1046, 1126
SspI AATATT 1 cut(s) 88
SspMI CTAG 2 cut(s) 516, 686
SstI GAGCTC 1 cut(s) 234
StuI AGGCCT 1 cut(s) 479
StyD4I CCNGG 2 cut(s) 116, 1314
StyI CCWWGG 2 cut(s) 767, 1358
TaaI ACNGT 3 cut(s) 202, 1106, 1333
TaqI TCGA 3 cut(s) 22, 91, 127
TaqII GACCGA 1 cut(s) 48
TasI AATT 6 cut(s) 545, 639, 901, 915, 927, 1424
TatI WGTACW 1 cut(s) 1101
TfiI GAWTC 8 cut(s) 121, 129, 181, 392, 594, 811, 1183, 1417
Tru1I TTAA 4 cut(s) 192, 656, 852, 1061
Tru9I TTAA 4 cut(s) 192, 656, 852, 1061
TscAI CASTG 3 cut(s) 139, 493, 838
TseFI GTSAC 2 cut(s) 734, 1437
TseI GCWGC 5 cut(s) 283, 371, 968, 971, 1311
Tsp45I GTSAC 2 cut(s) 734, 1437
TspDTI ATGAA 6 cut(s) 555, 651, 812, 899, 957, 1088
TspGWI ACGGA 2 cut(s) 293, 329
TspRI CASTG 3 cut(s) 139, 493, 838
XapI RAATTY 3 cut(s) 545, 901, 927
XmnI GAANNNNTTC 3 cut(s) 593, 1035, 1374
XspI CTAG 2 cut(s) 516, 686
ZrmI AGTACT 1 cut(s) 1103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.