Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002467

Physical Location & Seq

Genomic Coordinates Forward (+)

50343657 .. 50348559

Gene Structure 4903 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG303400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGCGGCTAGAAAGCTTGTTCGAGATTTGTTCCTCCACAGACAACCCCTTCTTCTTCTTCAGTCTCAACAACAGGTTTCAGGCACGAAAATTCGATTGCTTTCTGCAAATGGGTATTGGGGAAATCGTCGATTCAGTGTCTTCAATGAGTTTTCCAAGCAGGTCAAGGAGGAAACCAATAAGAGTCAACAATTTAAAAAGACGGTCGAGGAACTGAAGGAGCAAGTGGAAGAGCTCAAGGGGGTGAAAGAAGATCTGAAAGTTAGAACGAAGCAGACAACGGAGCAGCTGTACAAGCACGTGGATGGTGTTTGGACAGAGGCTGAAGCAGCAGCAAAGAAGGTCTCTGCAAATGTAAAAGAGAAAATCTCGGCTGCCACAGAAGAGGTCAAAGGATCTTTTGGAATTGGGAAAGAGCAGGCTTCAGGGCCTTCTGGTGCTTCAGCTGATCATGTTGCTGATGAAAAAGATGGAAGCAAGGCCTCGTCCACTGAAGATAAACACCAGCACTCAGGGTCTAGTGATACTGCAGAAACATTATTTGGAAAATTTAGGTCAAGGGTTTCTTCATCAAATGTTTCCTCTGTCTTTCATAGATTCAAGGAAGCAAAGTTTGTTGACATGGCCAAAAAAGGATATGAGATTGTAAAGGATGAGTTAAATGGTAGTCCAAGTAAGAAAAAGCATCTAGGGTTTGACCCTTCTTCTATCCCACGAGTTGAAAGAAGTGCAACAAGCGACATTTCTATTGTACCCACCAAACAATCTCGTTGGAGCAAAAAGTGGGAGTCTTTCAGAATGAAGATGCAAGGGAATCCTCTATTCAAGCGTATCAGTGGGATAAGTGAACCTGTTAAAATAAAAAGCGAAGAGATCATTGATGACATGAAGGAACGCTGGGAAACTACTGATAGCCCATTAGTTCACAAAATTCAGGATATCAATGAAGCTATTTTTCAAGAAACAAATGCTGCAGCATCAATCAAGGAGATCCATGCCCGAGATCCGTATGATCATAGTGCCATTTCCCTTGTCATATTTATCTTATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0005759 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015440 GO:0015450 GO:0015462 GO:0015833 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017038 GO:0017111 GO:0019866 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0032991 GO:0033036 GO:0033220 GO:0033365 GO:0034613 GO:0042623 GO:0042626 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098796 GO:0098798 GO:0098800 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim44

Protein Analysis

350

Amino Acids

39.45

Weight (kDa)

9.25

Isoelectric Point (pI)

42.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20510 AT2G20510 AT2G20510 AT2G20510 AT2G36070
fragaria_vesca	FvH4_2g21470 FvH4_2g21470 FvH4_4g12040 FvH4_4g12040 FvH4_4g12040 FvH4_4g12040
malus_domestica	MD05G1197100.v1.1 MD09G1008600.v1.1
prunus_persica	Prupe.8G223600_v2.0.a1
pyrus_communis	pycom05g18420 pycom10g15910
rosa_chinensis	RchiOBHm_Chr4g0409381 RchiOBHm_Chr5g0013581 RchiOBHm_Chr6g0288111
rosa_laevigata	RLG00000012438 RLG00000032032
rosa_multiflora	Rmu_co8365065.1_g000001 Rmu_sc0001616.1_g000049 Rmu_sc0001851.1_g000030 Rmu_sc0010766.1_g000003
rosa_roxburghii	Rroxscaffold_1G00062990 Rroxscaffold_5G00353910 Rroxscaffold_7G00180510
rosa_rugosa	Rorug04G0093400 Rorug06G0194200
rosa_samantha	Rh4AG155900 Rh4BG155100 Rh4CG165200 Rh4DG149000 Rh5BG102300 Rh6AG304400 Rh6BG310400 Rh6CG318500 Rh6DG303400
rosa_wichuraiana	Rw4G012760 Rw6G026340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	151
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	3 cut(s)	403, 985, 998
AcoI	YGGCCR	1 cut(s)	624
AcsI	RAATTY	3 cut(s)	90, 548, 930
AcuI	CTGAAG	6 cut(s)	44, 236, 345, 408, 426, 513
AcvI	CACGTG	1 cut(s)	301
AfaI	GTAC	2 cut(s)	293, 753
AgsI	TTSAA	5 cut(s)	145, 601, 722, 826, 959
AjuI	GAANNNNNNNTTGG	2 cut(s)	525, 557
AluBI	AGCT	5 cut(s)	16, 235, 289, 446, 950
AluI	AGCT	5 cut(s)	16, 235, 289, 446, 950
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	2 cut(s)	69, 349
AlwI	GGATC	3 cut(s)	403, 985, 998
AlwNI	CAGNNNCTG	1 cut(s)	323
Ama87I	CYCGRG	1 cut(s)	999
AoxI	GGCC	3 cut(s)	428, 480, 624
ApeKI	GCWGC	6 cut(s)	286, 329, 332, 374, 971, 974
ApoI	RAATTY	3 cut(s)	90, 548, 930
AspS9I	GGNCC	1 cut(s)	428
AsuHPI	GGTGA	1 cut(s)	256
AvaI	CYCGRG	1 cut(s)	999
BalI	TGGCCA	1 cut(s)	626
BanII	GRGCYC	1 cut(s)	237
BauI	CACGAG	1 cut(s)	714
BbrPI	CACGTG	1 cut(s)	301
BbsI	GAAGAC	1 cut(s)	133
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	6 cut(s)	298, 341, 344, 361, 958, 986
BccI	CCATC	2 cut(s)	299, 464
BclI	TGATCA	2 cut(s)	448, 1012
BcoDI	GTCTC	2 cut(s)	69, 349
BfaI	CTAG	3 cut(s)	9, 519, 689
BfmI	CTRYAG	2 cut(s)	528, 972
BfuAI	ACCTGC	1 cut(s)	151
BglII	AGATCT	1 cut(s)	253
BisI	GCNGC	7 cut(s)	6, 287, 330, 333, 375, 972, 975
BlsI	GCNGC	7 cut(s)	7, 288, 331, 334, 376, 973, 976
BmeT110I	CYCGRG	1 cut(s)	999
BmgT120I	GGNCC	1 cut(s)	428
BmsI	GCATC	3 cut(s)	694, 795, 986
BpiI	GAAGAC	1 cut(s)	133
BplI	GAGNNNNNCTC	2 cut(s)	353, 385
BpuEI	CTTGAG	1 cut(s)	221
BsaAI	YACGTR	1 cut(s)	301
BsaI	GGTCTC	1 cut(s)	349
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
BseGI	GGATG	2 cut(s)	310, 658
BseMII	CTCAG	1 cut(s)	525
BseXI	GCAGC	6 cut(s)	298, 341, 344, 361, 958, 986
BseYI	CCCAGC	1 cut(s)	897
Bsh1285I	CGRYCG	1 cut(s)	207
BshFI	GGCC	3 cut(s)	430, 482, 626
BsiEI	CGRYCG	1 cut(s)	207
BsiHKAI	GWGCWC	1 cut(s)	237
BsiHKCI	CYCGRG	1 cut(s)	999
BsmAI	GTCTC	2 cut(s)	69, 349
BsnI	GGCC	3 cut(s)	430, 482, 626
Bso31I	GGTCTC	1 cut(s)	349
BsoBI	CYCGRG	1 cut(s)	999
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp1407I	TGTACA	1 cut(s)	291
Bsp143I	GATC	7 cut(s)	253, 395, 448, 873, 990, 1003, 1012
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	3 cut(s)	430, 482, 626
BspCNI	CTCAG	1 cut(s)	524
BspMAI	CTGCAG	2 cut(s)	532, 976
BspMI	ACCTGC	1 cut(s)	151
BspPI	GGATC	3 cut(s)	403, 985, 998
BspQI	GCTCTTC	1 cut(s)	225
BspTNI	GGTCTC	1 cut(s)	349
BsrGI	TGTACA	1 cut(s)	291
BssMI	GATC	7 cut(s)	253, 395, 448, 873, 990, 1003, 1012
BssSI	CACGAG	1 cut(s)	714
Bst2BI	CACGAG	1 cut(s)	714
Bst4CI	ACNGT	1 cut(s)	205
Bst6I	CTCTTC	3 cut(s)	225, 378, 864
BstAUI	TGTACA	1 cut(s)	291
BstBAI	YACGTR	1 cut(s)	301
BstC8I	GCNNGC	1 cut(s)	420
BstDEI	CTNAG	1 cut(s)	511
BstF5I	GGATG	2 cut(s)	310, 658
BstKTI	GATC	7 cut(s)	256, 398, 451, 876, 993, 1006, 1015
BstMAI	GTCTC	2 cut(s)	69, 349
BstMBI	GATC	7 cut(s)	253, 395, 448, 873, 990, 1003, 1012
BstMCI	CGRYCG	1 cut(s)	207
BstMWI	GCNNNNNNNGC	2 cut(s)	295, 329
BstSFI	CTRYAG	2 cut(s)	528, 972
BstV1I	GCAGC	6 cut(s)	298, 341, 344, 361, 958, 986
BstV2I	GAAGAC	1 cut(s)	133
BstX2I	RGATCY	4 cut(s)	253, 395, 990, 1003
BstYI	RGATCY	4 cut(s)	253, 395, 990, 1003
BsuRI	GGCC	3 cut(s)	430, 482, 626
BtsCI	GGATG	2 cut(s)	310, 658
BtsIMutI	CAGTG	3 cut(s)	142, 489, 841
BveI	ACCTGC	1 cut(s)	151
Cac8I	GCNNGC	1 cut(s)	420
CaiI	CAGNNNCTG	1 cut(s)	323
Cfr13I	GGNCC	1 cut(s)	428
Csp6I	GTAC	2 cut(s)	292, 752
CviAII	CATG	4 cut(s)	452, 622, 886, 995
CviQI	GTAC	2 cut(s)	292, 752
DdeI	CTNAG	1 cut(s)	511
DpnI	GATC	7 cut(s)	255, 397, 450, 875, 992, 1005, 1014
DpnII	GATC	7 cut(s)	253, 395, 448, 873, 990, 1003, 1012
DraI	TTTAAA	1 cut(s)	196
EaeI	YGGCCR	1 cut(s)	624
Eam1104I	CTCTTC	3 cut(s)	225, 378, 864
EarI	CTCTTC	3 cut(s)	225, 378, 864
Ecl136II	GAGCTC	1 cut(s)	235
Eco147I	AGGCCT	1 cut(s)	482
Eco24I	GRGCYC	1 cut(s)	237
Eco31I	GGTCTC	1 cut(s)	349
Eco32I	GATATC	1 cut(s)	940
Eco53kI	GAGCTC	1 cut(s)	235
Eco57I	CTGAAG	6 cut(s)	44, 236, 345, 408, 426, 513
Eco72I	CACGTG	1 cut(s)	301
Eco88I	CYCGRG	1 cut(s)	999
EcoICRI	GAGCTC	1 cut(s)	235
EcoO109I	RGGNCCY	1 cut(s)	428
EcoRV	GATATC	1 cut(s)	940
EcoT38I	GRGCYC	1 cut(s)	237
FaeI	CATG	4 cut(s)	455, 625, 889, 998
FalI	AAGNNNNNCTT	2 cut(s)	550, 582
FatI	CATG	4 cut(s)	451, 621, 885, 994
FbaI	TGATCA	2 cut(s)	448, 1012
Fnu4HI	GCNGC	7 cut(s)	6, 287, 330, 333, 375, 972, 975
FokI	GGATG	2 cut(s)	317, 665
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	7 cut(s)	6, 287, 330, 333, 375, 972, 975
FspBI	CTAG	3 cut(s)	9, 519, 689
GluI	GCNGC	7 cut(s)	6, 287, 330, 333, 375, 972, 975
GsaI	CCCAGC	1 cut(s)	901
HaeIII	GGCC	3 cut(s)	430, 482, 626
Hin1II	CATG	4 cut(s)	455, 625, 889, 998
HincII	GTYRAC	2 cut(s)	188, 619
HindII	GTYRAC	2 cut(s)	188, 619
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	5 cut(s)	132, 184, 597, 788, 814
HphI	GGTGA	1 cut(s)	256
Hpy166II	GTNNAC	5 cut(s)	188, 489, 619, 848, 925
Hpy188I	TCNGA	2 cut(s)	258, 797
Hpy188III	TCNNGA	3 cut(s)	23, 935, 959
Hpy8I	GTNNAC	5 cut(s)	188, 489, 619, 848, 925
Hpy99I	CGWCG	1 cut(s)	132
HpyAV	CCTTC	6 cut(s)	59, 211, 334, 441, 711, 883
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	6 cut(s)	107, 350, 530, 731, 808, 974
HpyF10VI	GCNNNNNNNGC	2 cut(s)	295, 329
HpyF3I	CTNAG	1 cut(s)	511
HpySE526I	ACGT	1 cut(s)	300
Hsp92II	CATG	4 cut(s)	455, 625, 889, 998
Ksp22I	TGATCA	2 cut(s)	448, 1012
Kzo9I	GATC	7 cut(s)	253, 395, 448, 873, 990, 1003, 1012
LguI	GCTCTTC	1 cut(s)	225
LmnI	GCTCC	3 cut(s)	220, 283, 774
Lsp1109I	GCAGC	6 cut(s)	298, 341, 344, 361, 958, 986
LweI	GCATC	3 cut(s)	694, 795, 986
MaeI	CTAG	3 cut(s)	9, 519, 689
MaeII	ACGT	1 cut(s)	300
MalI	GATC	7 cut(s)	255, 397, 450, 875, 992, 1005, 1014
MboI	GATC	7 cut(s)	253, 395, 448, 873, 990, 1003, 1012
MflI	RGATCY	4 cut(s)	253, 395, 990, 1003
MhlI	GDGCHC	1 cut(s)	237
MlsI	TGGCCA	1 cut(s)	626
MluCI	AATT	5 cut(s)	90, 191, 405, 548, 930
MluNI	TGGCCA	1 cut(s)	626
MlyI	GAGTC	2 cut(s)	193, 797
MmeI	TCCRAC	1 cut(s)	752
MnlI	CCTC	8 cut(s)	44, 163, 202, 313, 379, 493, 592, 828
Mox20I	TGGCCA	1 cut(s)	626
MscI	TGGCCA	1 cut(s)	626
MseI	TTAA	3 cut(s)	195, 659, 855
MslI	CAYNNNNRTG	1 cut(s)	303
Msp20I	TGGCCA	1 cut(s)	626
MspA1I	CMGCKG	2 cut(s)	289, 446
MwoI	GCNNNNNNNGC	2 cut(s)	295, 329
NdeII	GATC	7 cut(s)	253, 395, 448, 873, 990, 1003, 1012
NlaIII	CATG	4 cut(s)	455, 625, 889, 998
NmeAIII	GCCGAG	1 cut(s)	350
PceI	AGGCCT	1 cut(s)	482
PciSI	GCTCTTC	1 cut(s)	225
PfeI	GAWTC	3 cut(s)	132, 597, 814
PkrI	GCNGC	7 cut(s)	7, 288, 331, 334, 376, 973, 976
PleI	GAGTC	2 cut(s)	192, 796
PmaCI	CACGTG	1 cut(s)	301
PmlI	CACGTG	1 cut(s)	301
PpsI	GAGTC	2 cut(s)	192, 796
Ppu21I	YACGTR	1 cut(s)	301
Psp124BI	GAGCTC	1 cut(s)	237
PspCI	CACGTG	1 cut(s)	301
PspFI	CCCAGC	1 cut(s)	897
PspPI	GGNCC	1 cut(s)	428
PstI	CTGCAG	2 cut(s)	532, 976
PstNI	CAGNNNCTG	1 cut(s)	323
PsuI	RGATCY	4 cut(s)	253, 395, 990, 1003
PvuII	CAGCTG	2 cut(s)	289, 446
RsaI	GTAC	2 cut(s)	293, 753
RsaNI	GTAC	2 cut(s)	292, 752
RseI	CAYNNNNRTG	1 cut(s)	303
SacI	GAGCTC	1 cut(s)	237
SapI	GCTCTTC	1 cut(s)	225
SaqAI	TTAA	3 cut(s)	195, 659, 855
SatI	GCNGC	7 cut(s)	6, 287, 330, 333, 375, 972, 975
Sau3AI	GATC	7 cut(s)	253, 395, 448, 873, 990, 1003, 1012
Sau96I	GGNCC	1 cut(s)	428
SchI	GAGTC	2 cut(s)	193, 797
SduI	GDGCHC	1 cut(s)	237
SfaNI	GCATC	3 cut(s)	694, 795, 986
SfcI	CTRYAG	2 cut(s)	528, 972
SmiMI	CAYNNNNRTG	1 cut(s)	303
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
Sse9I	AATT	5 cut(s)	90, 191, 405, 548, 930
SseBI	AGGCCT	1 cut(s)	482
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	3 cut(s)	9, 519, 689
SstI	GAGCTC	1 cut(s)	237
StuI	AGGCCT	1 cut(s)	482
TaaI	ACNGT	1 cut(s)	205
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	4 cut(s)	22, 94, 130, 207
TasI	AATT	5 cut(s)	90, 191, 405, 548, 930
TatI	WGTACW	1 cut(s)	291
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	3 cut(s)	132, 597, 814
Tru1I	TTAA	3 cut(s)	195, 659, 855
Tru9I	TTAA	3 cut(s)	195, 659, 855
TscAI	CASTG	3 cut(s)	142, 496, 841
TseI	GCWGC	6 cut(s)	286, 329, 332, 374, 971, 974
TspDTI	ATGAA	6 cut(s)	477, 558, 581, 815, 902, 960
TspGWI	ACGGA	2 cut(s)	296, 996
TspRI	CASTG	3 cut(s)	142, 496, 841
XapI	RAATTY	3 cut(s)	90, 548, 930
XspI	CTAG	3 cut(s)	9, 519, 689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.