Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002467

Physical Location & Seq

Genomic Coordinates Forward (+)

10339762 .. 10341470

Gene Structure 1709 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032032

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAAGGTATATATTAAACAACTGAACAAGTACTGTACTGATGAGGTGATTGAGCGGTTTATAGCCGAGCGTCAGGCTTTTCAAAGCCATGGCATCTTTTTTGATGACAAGATTCTACATATCTCTGAGGTGGAAGTAACAGAAACCAAACTAATTGGAGACTCTCCCATAATCATTTTAGGGTTCCAAACACAGCAAGTCTTTTGTGTACGTGATAAAAATGGTGCAATAACAGAAGGCAGCCGCAATACGATCCAAACTGTGTACTACACCTGGGACATGCAACCTTGGGATCCTGAAGAACTTCCTCAAGGTTTCCAGATATGGAGACTTATCTTGTACTTCATCTACCGTGACAATAAGGGCGGCGATACAAGAAGTGGCAGCCTAGTGCTGAAGACACTGTGGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0005759 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015440 GO:0015450 GO:0015462 GO:0015833 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017038 GO:0017111 GO:0019866 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0032991 GO:0033036 GO:0033220 GO:0033365 GO:0034613 GO:0042623 GO:0042626 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098796 GO:0098798 GO:0098800 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim44

Protein Analysis

138

Amino Acids

16.14

Weight (kDa)

5.68

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim44	PF04280	6 - 97	2.1e-21	Tim44-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20510 AT2G20510 AT2G20510 AT2G20510 AT2G36070
fragaria_vesca	FvH4_2g21470 FvH4_2g21470 FvH4_4g12040 FvH4_4g12040 FvH4_4g12040 FvH4_4g12040
malus_domestica	MD05G1197100.v1.1 MD09G1008600.v1.1
prunus_persica	Prupe.8G223600_v2.0.a1
pyrus_communis	pycom05g18420 pycom10g15910
rosa_chinensis	RchiOBHm_Chr4g0409381 RchiOBHm_Chr5g0013581 RchiOBHm_Chr6g0288111
rosa_laevigata	RLG00000012438 RLG00000032032
rosa_multiflora	Rmu_co8365065.1_g000001 Rmu_sc0001616.1_g000049 Rmu_sc0001851.1_g000030 Rmu_sc0010766.1_g000003
rosa_roxburghii	Rroxscaffold_1G00062990 Rroxscaffold_5G00353910 Rroxscaffold_7G00180510
rosa_rugosa	Rorug04G0093400 Rorug06G0194200
rosa_samantha	Rh4AG155900 Rh4BG155100 Rh4CG165200 Rh4DG149000 Rh5BG102300 Rh6AG304400 Rh6BG310400 Rh6CG318500 Rh6DG303400
rosa_wichuraiana	Rw4G012760 Rw6G026340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	55
AciI	CCGC	3 cut(s)	55, 244, 366
AclWI	GGATC	3 cut(s)	247, 287, 300
AcuI	CTGAAG	1 cut(s)	318
AfaI	GTAC	5 cut(s)	32, 37, 210, 266, 341
AgsI	TTSAA	1 cut(s)	83
AjnI	CCWGG	1 cut(s)	272
Alw26I	GTCTC	2 cut(s)	153, 322
AlwI	GGATC	3 cut(s)	247, 287, 300
ApeKI	GCWGC	2 cut(s)	240, 384
Asp700I	GAANNNNTTC	1 cut(s)	303
AsuHPI	GGTGA	1 cut(s)	58
BamHI	GGATCC	1 cut(s)	292
BbsI	GAAGAC	1 cut(s)	404
BbvI	GCAGC	2 cut(s)	252, 396
BciT130I	CCWGG	1 cut(s)	274
BcoDI	GTCTC	2 cut(s)	153, 322
BfaI	CTAG	1 cut(s)	389
BisI	GCNGC	4 cut(s)	241, 244, 367, 385
BlsI	GCNGC	4 cut(s)	242, 245, 368, 386
BmcAI	AGTACT	1 cut(s)	32
Bme1390I	CCNGG	1 cut(s)	274
BmiI	GGNNCC	2 cut(s)	185, 294
BmrFI	CCNGG	1 cut(s)	274
BmsI	GCATC	1 cut(s)	102
BpiI	GAAGAC	1 cut(s)	404
BpuEI	CTTGAG	1 cut(s)	294
BsaAI	YACGTR	1 cut(s)	212
BsaJI	CCNNGG	3 cut(s)	88, 273, 287
BseBI	CCWGG	1 cut(s)	274
BseDI	CCNNGG	3 cut(s)	88, 273, 287
BseMII	CTCAG	1 cut(s)	117
BseXI	GCAGC	2 cut(s)	252, 396
BslFI	GGGAC	1 cut(s)	290
BsmAI	GTCTC	2 cut(s)	153, 322
BsmFI	GGGAC	1 cut(s)	290
Bsp143I	GATC	2 cut(s)	252, 292
Bsp19I	CCATGG	1 cut(s)	88
BspACI	CCGC	3 cut(s)	55, 244, 366
BspCNI	CTCAG	1 cut(s)	118
BspLI	GGNNCC	2 cut(s)	185, 294
BspPI	GGATC	3 cut(s)	247, 287, 300
BsrBI	CCGCTC	1 cut(s)	55
BssECI	CCNNGG	3 cut(s)	88, 273, 287
BssMI	GATC	2 cut(s)	252, 292
BssT1I	CCWWGG	2 cut(s)	88, 287
Bst2UI	CCWGG	1 cut(s)	274
Bst4CI	ACNGT	4 cut(s)	35, 262, 353, 405
BstBAI	YACGTR	1 cut(s)	212
BstDEI	CTNAG	1 cut(s)	126
BstDSI	CCRYGG	1 cut(s)	88
BstKTI	GATC	2 cut(s)	255, 295
BstMAI	GTCTC	2 cut(s)	153, 322
BstMBI	GATC	2 cut(s)	252, 292
BstNI	CCWGG	1 cut(s)	274
BstNSI	RCATGY	1 cut(s)	283
BstSCI	CCNGG	1 cut(s)	272
BstV1I	GCAGC	2 cut(s)	252, 396
BstV2I	GAAGAC	1 cut(s)	404
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BtgI	CCRYGG	1 cut(s)	88
BtsIMutI	CAGTG	1 cut(s)	401
CseI	GACGC	1 cut(s)	59
Csp6I	GTAC	5 cut(s)	31, 36, 209, 265, 340
CviAII	CATG	2 cut(s)	89, 280
CviJI	RGCY	5 cut(s)	65, 77, 87, 243, 387
CviKI_1	RGCY	5 cut(s)	65, 77, 87, 243, 387
CviQI	GTAC	5 cut(s)	31, 36, 209, 265, 340
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	2 cut(s)	254, 294
DpnII	GATC	2 cut(s)	252, 292
Eco130I	CCWWGG	2 cut(s)	88, 287
Eco57I	CTGAAG	1 cut(s)	318
EcoRII	CCWGG	1 cut(s)	272
EcoT14I	CCWWGG	2 cut(s)	88, 287
ErhI	CCWWGG	2 cut(s)	88, 287
FaeI	CATG	2 cut(s)	92, 283
FaiI	YATR	8 cut(s)	10, 12, 62, 90, 120, 170, 281, 325
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	2 cut(s)	88, 279
Fnu4HI	GCNGC	4 cut(s)	241, 244, 367, 385
Fsp4HI	GCNGC	4 cut(s)	241, 244, 367, 385
FspBI	CTAG	1 cut(s)	389
GluI	GCNGC	4 cut(s)	241, 244, 367, 385
HgaI	GACGC	1 cut(s)	59
Hin1II	CATG	2 cut(s)	92, 283
HinfI	GANTC	2 cut(s)	112, 161
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	2 cut(s)	209, 265
Hpy188I	TCNGA	1 cut(s)	127
Hpy188III	TCNNGA	2 cut(s)	296, 319
Hpy8I	GTNNAC	2 cut(s)	209, 265
HpyAV	CCTTC	1 cut(s)	230
HpyCH4III	ACNGT	4 cut(s)	35, 262, 353, 405
HpyCH4IV	ACGT	1 cut(s)	211
HpyCH4V	TGCA	2 cut(s)	227, 283
HpyF3I	CTNAG	1 cut(s)	126
HpySE526I	ACGT	1 cut(s)	211
Hsp92II	CATG	2 cut(s)	92, 283
Kzo9I	GATC	2 cut(s)	252, 292
LpnPI	CCDG	5 cut(s)	59, 259, 286, 309, 332
Lsp1109I	GCAGC	2 cut(s)	252, 396
LweI	GCATC	1 cut(s)	102
MaeI	CTAG	1 cut(s)	389
MaeII	ACGT	1 cut(s)	211
MaeIII	GTNAC	2 cut(s)	136, 353
MalI	GATC	2 cut(s)	254, 294
MbiI	CCGCTC	1 cut(s)	55
MboI	GATC	2 cut(s)	252, 292
MboII	GAAGA	2 cut(s)	311, 409
MflI	RGATCY	1 cut(s)	292
MluCI	AATT	1 cut(s)	153
MlyI	GAGTC	1 cut(s)	155
MnlI	CCTC	4 cut(s)	37, 121, 318, 402
MroXI	GAANNNNTTC	1 cut(s)	303
MseI	TTAA	1 cut(s)	15
MspR9I	CCNGG	1 cut(s)	274
MvaI	CCWGG	1 cut(s)	274
NcoI	CCATGG	1 cut(s)	88
NdeII	GATC	2 cut(s)	252, 292
NlaIII	CATG	2 cut(s)	92, 283
NlaIV	GGNNCC	2 cut(s)	185, 294
NmeAIII	GCCGAG	1 cut(s)	91
NmuCI	GTSAC	1 cut(s)	353
NspI	RCATGY	1 cut(s)	283
PdmI	GAANNNNTTC	1 cut(s)	303
PfeI	GAWTC	1 cut(s)	112
PkrI	GCNGC	4 cut(s)	242, 245, 368, 386
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
Ppu21I	YACGTR	1 cut(s)	212
Psp6I	CCWGG	1 cut(s)	272
PspGI	CCWGG	1 cut(s)	272
PspN4I	GGNNCC	2 cut(s)	185, 294
PsuI	RGATCY	1 cut(s)	292
RsaI	GTAC	5 cut(s)	32, 37, 210, 266, 341
RsaNI	GTAC	5 cut(s)	31, 36, 209, 265, 340
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	4 cut(s)	241, 244, 367, 385
Sau3AI	GATC	2 cut(s)	252, 292
ScaI	AGTACT	1 cut(s)	32
SchI	GAGTC	1 cut(s)	155
ScrFI	CCNGG	1 cut(s)	274
SetI	ASST	8 cut(s)	9, 48, 132, 214, 275, 289, 316, 413
SfaNI	GCATC	1 cut(s)	102
SmlI	CTYRAG	1 cut(s)	309
SmoI	CTYRAG	1 cut(s)	309
Sse9I	AATT	1 cut(s)	153
SsiI	CCGC	3 cut(s)	55, 244, 366
SspMI	CTAG	1 cut(s)	389
StyD4I	CCNGG	1 cut(s)	272
StyI	CCWWGG	2 cut(s)	88, 287
TaaI	ACNGT	4 cut(s)	35, 262, 353, 405
TaiI	ACGT	1 cut(s)	214
TasI	AATT	1 cut(s)	153
TatI	WGTACW	4 cut(s)	30, 35, 264, 339
TauI	GCSGC	2 cut(s)	246, 369
TfiI	GAWTC	1 cut(s)	112
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	1 cut(s)	408
TseFI	GTSAC	1 cut(s)	353
TseI	GCWGC	2 cut(s)	240, 384
Tsp45I	GTSAC	1 cut(s)	353
TspDTI	ATGAA	2 cut(s)	17, 334
TspRI	CASTG	1 cut(s)	408
XceI	RCATGY	1 cut(s)	283
XmnI	GAANNNNTTC	1 cut(s)	303
XspI	CTAG	1 cut(s)	389
ZrmI	AGTACT	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.