Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002467

Physical Location & Seq

Genomic Coordinates Forward (+)

9133586 .. 9134487

Gene Structure 902 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29410

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGAAGGGAGATATTAAAACACTGAACATGTACTGTGCTGATGAGGCGATTGAGCGGTGTATAGCAGAGCGTCAGGCTTTTCAAAGCCAAGGCATCTTTTTTGATAACAAGATTCTACATATCTCTGAGGTGGAAGTAACAGAAACCAAACTAATTGGAGACTCTCCCATCATCATTTTAGGGTTCCAAACACAGCAAGTCTATTGTGTACGTGATAAAAATGGTGCAATAACACAAGGCAGCCACGATACGATCCAAACCGTGTACTACACCTGGGACATGCAACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0005759 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015440 GO:0015450 GO:0015462 GO:0015833 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017038 GO:0017111 GO:0019866 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0032991 GO:0033036 GO:0033220 GO:0033365 GO:0034613 GO:0042623 GO:0042626 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098796 GO:0098798 GO:0098800 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim44

Protein Analysis

96

Amino Acids

10.96

Weight (kDa)

4.77

Isoelectric Point (pI)

34.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim44	PF04280	1 - 95	2.2e-22	Tim44-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20510 AT2G20510 AT2G20510 AT2G20510 AT2G36070
fragaria_vesca	FvH4_2g21470 FvH4_2g21470 FvH4_4g12040 FvH4_4g12040 FvH4_4g12040 FvH4_4g12040
malus_domestica	MD05G1197100.v1.1 MD09G1008600.v1.1
prunus_persica	Prupe.8G223600_v2.0.a1
pyrus_communis	pycom05g18420 pycom10g15910
rosa_chinensis	RchiOBHm_Chr4g0409381 RchiOBHm_Chr5g0013581 RchiOBHm_Chr6g0288111
rosa_laevigata	RLG00000012438 RLG00000032032
rosa_multiflora	Rmu_co8365065.1_g000001 Rmu_sc0001616.1_g000049 Rmu_sc0001851.1_g000030 Rmu_sc0010766.1_g000003
rosa_roxburghii	Rroxscaffold_1G00062990 Rroxscaffold_5G00353910 Rroxscaffold_7G00180510
rosa_rugosa	Rorug04G0093400 Rorug06G0194200
rosa_samantha	Rh4AG155900 Rh4BG155100 Rh4CG165200 Rh4DG149000 Rh5BG102300 Rh6AG304400 Rh6BG310400 Rh6CG318500 Rh6DG303400
rosa_wichuraiana	Rw4G012760 Rw6G026340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	55
AciI	CCGC	1 cut(s)	55
AclWI	GGATC	1 cut(s)	247
AfaI	GTAC	3 cut(s)	32, 210, 266
AflIII	ACRYGT	1 cut(s)	27
AgsI	TTSAA	1 cut(s)	83
AjnI	CCWGG	1 cut(s)	272
Alw26I	GTCTC	1 cut(s)	153
AlwI	GGATC	1 cut(s)	247
ApeKI	GCWGC	1 cut(s)	240
BbvI	GCAGC	1 cut(s)	252
BccI	CCATC	1 cut(s)	176
BciT130I	CCWGG	1 cut(s)	274
BcoDI	GTCTC	1 cut(s)	153
BisI	GCNGC	1 cut(s)	241
BlsI	GCNGC	1 cut(s)	242
Bme1390I	CCNGG	1 cut(s)	274
BmiI	GGNNCC	1 cut(s)	185
BmrFI	CCNGG	1 cut(s)	274
BmsI	GCATC	1 cut(s)	102
BsaAI	YACGTR	1 cut(s)	212
BsaJI	CCNNGG	2 cut(s)	88, 273
BseBI	CCWGG	1 cut(s)	274
BseDI	CCNNGG	2 cut(s)	88, 273
BseMII	CTCAG	1 cut(s)	117
BseXI	GCAGC	1 cut(s)	252
BsmAI	GTCTC	1 cut(s)	153
Bsp143I	GATC	1 cut(s)	252
BspACI	CCGC	1 cut(s)	55
BspCNI	CTCAG	1 cut(s)	118
BspLI	GGNNCC	1 cut(s)	185
BspPI	GGATC	1 cut(s)	247
BsrBI	CCGCTC	1 cut(s)	55
BssECI	CCNNGG	2 cut(s)	88, 273
BssMI	GATC	1 cut(s)	252
BssT1I	CCWWGG	1 cut(s)	88
Bst2UI	CCWGG	1 cut(s)	274
Bst4CI	ACNGT	2 cut(s)	35, 262
BstBAI	YACGTR	1 cut(s)	212
BstDEI	CTNAG	1 cut(s)	126
BstKTI	GATC	1 cut(s)	255
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	1 cut(s)	252
BstMWI	GCNNNNNNNGC	1 cut(s)	44
BstNI	CCWGG	1 cut(s)	274
BstNSI	RCATGY	2 cut(s)	31, 283
BstSCI	CCNGG	1 cut(s)	272
BstV1I	GCAGC	1 cut(s)	252
BtsIMutI	CAGTG	1 cut(s)	20
CseI	GACGC	1 cut(s)	59
Csp6I	GTAC	3 cut(s)	31, 209, 265
CviAII	CATG	2 cut(s)	28, 280
CviJI	RGCY	3 cut(s)	77, 87, 243
CviKI_1	RGCY	3 cut(s)	77, 87, 243
CviQI	GTAC	3 cut(s)	31, 209, 265
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	1 cut(s)	254
DpnII	GATC	1 cut(s)	252
Eco130I	CCWWGG	1 cut(s)	88
EcoRII	CCWGG	1 cut(s)	272
EcoT14I	CCWWGG	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	2 cut(s)	31, 283
FaiI	YATR	4 cut(s)	29, 62, 120, 281
FatI	CATG	2 cut(s)	27, 279
Fnu4HI	GCNGC	1 cut(s)	241
Fsp4HI	GCNGC	1 cut(s)	241
GluI	GCNGC	1 cut(s)	241
HgaI	GACGC	1 cut(s)	59
Hin1II	CATG	2 cut(s)	31, 283
HinfI	GANTC	2 cut(s)	112, 161
Hpy166II	GTNNAC	2 cut(s)	209, 265
Hpy188I	TCNGA	1 cut(s)	127
Hpy8I	GTNNAC	2 cut(s)	209, 265
HpyCH4III	ACNGT	2 cut(s)	35, 262
HpyCH4IV	ACGT	1 cut(s)	211
HpyCH4V	TGCA	2 cut(s)	227, 283
HpyF10VI	GCNNNNNNNGC	1 cut(s)	44
HpyF3I	CTNAG	1 cut(s)	126
HpySE526I	ACGT	1 cut(s)	211
Hsp92II	CATG	2 cut(s)	31, 283
Kzo9I	GATC	1 cut(s)	252
LpnPI	CCDG	3 cut(s)	59, 259, 286
Lsp1109I	GCAGC	1 cut(s)	252
LweI	GCATC	1 cut(s)	102
MaeII	ACGT	1 cut(s)	211
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	1 cut(s)	254
MbiI	CCGCTC	1 cut(s)	55
MboI	GATC	1 cut(s)	252
MluCI	AATT	1 cut(s)	153
MlyI	GAGTC	1 cut(s)	155
MnlI	CCTC	2 cut(s)	37, 121
MseI	TTAA	1 cut(s)	15
MspR9I	CCNGG	1 cut(s)	274
MvaI	CCWGG	1 cut(s)	274
MwoI	GCNNNNNNNGC	1 cut(s)	44
NdeII	GATC	1 cut(s)	252
NlaIII	CATG	2 cut(s)	31, 283
NlaIV	GGNNCC	1 cut(s)	185
NspI	RCATGY	2 cut(s)	31, 283
PciI	ACATGT	1 cut(s)	27
PfeI	GAWTC	1 cut(s)	112
PkrI	GCNGC	1 cut(s)	242
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
Ppu21I	YACGTR	1 cut(s)	212
PscI	ACATGT	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	272
PspGI	CCWGG	1 cut(s)	272
PspN4I	GGNNCC	1 cut(s)	185
RsaI	GTAC	3 cut(s)	32, 210, 266
RsaNI	GTAC	3 cut(s)	31, 209, 265
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	1 cut(s)	241
Sau3AI	GATC	1 cut(s)	252
SchI	GAGTC	1 cut(s)	155
ScrFI	CCNGG	1 cut(s)	274
SetI	ASST	4 cut(s)	132, 214, 275, 289
SfaNI	GCATC	1 cut(s)	102
Sse9I	AATT	1 cut(s)	153
SsiI	CCGC	1 cut(s)	55
StyD4I	CCNGG	1 cut(s)	272
StyI	CCWWGG	1 cut(s)	88
TaaI	ACNGT	2 cut(s)	35, 262
TaiI	ACGT	1 cut(s)	214
TasI	AATT	1 cut(s)	153
TatI	WGTACW	2 cut(s)	30, 264
TfiI	GAWTC	1 cut(s)	112
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	1 cut(s)	27
TseI	GCWGC	1 cut(s)	240
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	27
XceI	RCATGY	2 cut(s)	31, 283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.