Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8365065.1

Orthogroup ID

OG0002467

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 901

Gene Structure 901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8365065.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 397 bp

attcaaggaagcaaagtttgttgacatggccaaaaaaggatatgacattgtaagggatgagttaaatggtagtccgagtaagaaaaagcatctagggtttgacccttcttccatcccaagagttgaaagaagtgcaacaagcaacattgctattgtacccaccaaacaatctcgttggagcaaaaagtgggaggctttcagaatgaagatgcaagggaatcctctattcaagcgtatcagtgggataagtgaacctgttaaaatgaaaggcgaggagattatgggtgacatgaaagaacgctgggaaactactgatagcccaatagttcacaaaattcaggagtacacttctaaaccttatttacttgttaagctcattactttgaattatccctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0005759 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015440 GO:0015450 GO:0015462 GO:0015833 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017038 GO:0017111 GO:0019866 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0032991 GO:0033036 GO:0033220 GO:0033365 GO:0034613 GO:0042623 GO:0042626 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098796 GO:0098798 GO:0098800 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim44

Protein Analysis

131

Amino Acids

15.15

Weight (kDa)

9.75

Isoelectric Point (pI)

54.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20510 AT2G20510 AT2G20510 AT2G20510 AT2G36070
fragaria_vesca	FvH4_2g21470 FvH4_2g21470 FvH4_4g12040 FvH4_4g12040 FvH4_4g12040 FvH4_4g12040
malus_domestica	MD05G1197100.v1.1 MD09G1008600.v1.1
prunus_persica	Prupe.8G223600_v2.0.a1
pyrus_communis	pycom05g18420 pycom10g15910
rosa_chinensis	RchiOBHm_Chr4g0409381 RchiOBHm_Chr5g0013581 RchiOBHm_Chr6g0288111
rosa_laevigata	RLG00000012438 RLG00000032032
rosa_multiflora	Rmu_co8365065.1_g000001 Rmu_sc0001616.1_g000049 Rmu_sc0001851.1_g000030 Rmu_sc0010766.1_g000003
rosa_roxburghii	Rroxscaffold_1G00062990 Rroxscaffold_5G00353910 Rroxscaffold_7G00180510
rosa_rugosa	Rorug04G0093400 Rorug06G0194200
rosa_samantha	Rh4AG155900 Rh4BG155100 Rh4CG165200 Rh4DG149000 Rh5BG102300 Rh6AG304400 Rh6BG310400 Rh6CG318500 Rh6DG303400
rosa_wichuraiana	Rw4G012760 Rw6G026340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	28
AcsI	RAATTY	1 cut(s)	334
AfaI	GTAC	2 cut(s)	157, 345
AgsI	TTSAA	4 cut(s)	5, 126, 230, 386
AluBI	AGCT	1 cut(s)	374
AluI	AGCT	1 cut(s)	374
AoxI	GGCC	1 cut(s)	28
ApoI	RAATTY	1 cut(s)	334
AsuHPI	GGTGA	1 cut(s)	297
BalI	TGGCCA	1 cut(s)	30
BccI	CCATC	1 cut(s)	120
BfaI	CTAG	1 cut(s)	93
BmsI	GCATC	2 cut(s)	98, 199
Bse3DI	GCAATG	1 cut(s)	145
BseGI	GGATG	2 cut(s)	62, 112
BseMI	GCAATG	1 cut(s)	145
BseRI	GAGGAG	1 cut(s)	288
BseYI	CCCAGC	1 cut(s)	301
BshFI	GGCC	1 cut(s)	30
BsnI	GGCC	1 cut(s)	30
BspANI	GGCC	1 cut(s)	30
BsrDI	GCAATG	1 cut(s)	145
BstF5I	GGATG	2 cut(s)	62, 112
BsuRI	GGCC	1 cut(s)	30
BtsCI	GGATG	2 cut(s)	62, 112
BtsIMutI	CAGTG	1 cut(s)	245
Csp6I	GTAC	2 cut(s)	156, 344
CviAII	CATG	2 cut(s)	26, 290
CviJI	RGCY	4 cut(s)	30, 195, 319, 374
CviKI_1	RGCY	4 cut(s)	30, 195, 319, 374
CviQI	GTAC	2 cut(s)	156, 344
EaeI	YGGCCR	1 cut(s)	28
FaeI	CATG	2 cut(s)	29, 293
FaiI	YATR	4 cut(s)	27, 43, 282, 291
FatI	CATG	2 cut(s)	25, 289
FokI	GGATG	2 cut(s)	69, 99
FspBI	CTAG	1 cut(s)	93
GsaI	CCCAGC	1 cut(s)	305
HaeIII	GGCC	1 cut(s)	30
Hin1II	CATG	2 cut(s)	29, 293
HincII	GTYRAC	1 cut(s)	23
HindII	GTYRAC	1 cut(s)	23
HinfI	GANTC	1 cut(s)	218
HphI	GGTGA	1 cut(s)	297
Hpy166II	GTNNAC	4 cut(s)	23, 252, 329, 346
Hpy188I	TCNGA	2 cut(s)	76, 201
Hpy188III	TCNNGA	1 cut(s)	339
Hpy8I	GTNNAC	4 cut(s)	23, 252, 329, 346
HpyAV	CCTTC	1 cut(s)	115
HpyCH4V	TGCA	2 cut(s)	135, 212
Hsp92II	CATG	2 cut(s)	29, 293
LmnI	GCTCC	1 cut(s)	178
LpnPI	CCDG	3 cut(s)	268, 287, 324
LweI	GCATC	2 cut(s)	98, 199
MaeI	CTAG	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	285
MboII	GAAGA	2 cut(s)	100, 218
MlsI	TGGCCA	1 cut(s)	30
MluCI	AATT	2 cut(s)	334, 386
MluNI	TGGCCA	1 cut(s)	30
MmeI	TCCRAC	1 cut(s)	156
MnlI	CCTC	3 cut(s)	185, 232, 266
Mox20I	TGGCCA	1 cut(s)	30
MscI	TGGCCA	1 cut(s)	30
MseI	TTAA	3 cut(s)	63, 259, 370
Msp20I	TGGCCA	1 cut(s)	30
NlaIII	CATG	2 cut(s)	29, 293
NmuCI	GTSAC	1 cut(s)	285
PfeI	GAWTC	1 cut(s)	218
PspFI	CCCAGC	1 cut(s)	301
RsaI	GTAC	2 cut(s)	157, 345
RsaNI	GTAC	2 cut(s)	156, 344
SaqAI	TTAA	3 cut(s)	63, 259, 370
SetI	ASST	3 cut(s)	257, 359, 376
SfaNI	GCATC	2 cut(s)	98, 199
Sse9I	AATT	2 cut(s)	334, 386
SspMI	CTAG	1 cut(s)	93
TasI	AATT	2 cut(s)	334, 386
TatI	WGTACW	1 cut(s)	343
TfiI	GAWTC	1 cut(s)	218
Tru1I	TTAA	3 cut(s)	63, 259, 370
Tru9I	TTAA	3 cut(s)	63, 259, 370
TscAI	CASTG	1 cut(s)	245
TseFI	GTSAC	1 cut(s)	285
Tsp45I	GTSAC	1 cut(s)	285
TspDTI	ATGAA	3 cut(s)	219, 279, 306
TspRI	CASTG	1 cut(s)	245
XapI	RAATTY	1 cut(s)	334
XspI	CTAG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.