Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002467

Physical Location & Seq

Genomic Coordinates Reverse (-)

85005164 .. 85005935

Gene Structure 772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00062990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGCCAAAAAAGGATATCACATTCTAAAGGATGAGTTAAATGGTAGTCCAAGTAAGAAAAAGTATCTAGGGTTTGACCCTTCTTCCATCCCACGAGTTGAAAGAAGAGCAACAAGCGACATCGCTATTGTACCCACCAAACAATCTCGTTGGAGCAAAAAGTGGGAGGCTTTCAGACTGAAGATGCAAGGGGATAATCCTCTATTCAAGCGTATCAGTGGGATAAGTGAACCTGTTGAAATAAAAAGCGAGGAGATCATTGATGACATGAAGGAACGCTGGGAAACTACTGATAGCCCAATAGTTCAGAATGTGGTCAAAACTGTGTTAAATGCTTACACGAAGGGTAATATTAAAACACTGAACAAGTACTGTGCTGATGAGGTGATTGAGCGGTGTATAGCCGAGCGTCAGGCTTTTCAAAACCATGGCATCTTTTTTGATAACAAGATTATTCTACATATCTCTGAGGTGGAAGTAACAGAAACCAAACTAATTGGAGACTCTCCCATAATCATTTTATGGTTCCAAACACAGCAAGTCTTTTGTGTACGTGATAAAAATGGTGCAATAACAGAAGGCAGCCGCAATACGATCCAAACTGTGTACTACACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0005759 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015440 GO:0015450 GO:0015462 GO:0015833 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017038 GO:0017111 GO:0019866 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0032991 GO:0033036 GO:0033220 GO:0033365 GO:0034613 GO:0042623 GO:0042626 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098796 GO:0098798 GO:0098800 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim44

Protein Analysis

205

Amino Acids

23.59

Weight (kDa)

8.86

Isoelectric Point (pI)

55.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim44	PF04280	102 - 204	1.1e-20	Tim44-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20510 AT2G20510 AT2G20510 AT2G20510 AT2G36070
fragaria_vesca	FvH4_2g21470 FvH4_2g21470 FvH4_4g12040 FvH4_4g12040 FvH4_4g12040 FvH4_4g12040
malus_domestica	MD05G1197100.v1.1 MD09G1008600.v1.1
prunus_persica	Prupe.8G223600_v2.0.a1
pyrus_communis	pycom05g18420 pycom10g15910
rosa_chinensis	RchiOBHm_Chr4g0409381 RchiOBHm_Chr5g0013581 RchiOBHm_Chr6g0288111
rosa_laevigata	RLG00000012438 RLG00000032032
rosa_multiflora	Rmu_co8365065.1_g000001 Rmu_sc0001616.1_g000049 Rmu_sc0001851.1_g000030 Rmu_sc0010766.1_g000003
rosa_roxburghii	Rroxscaffold_1G00062990 Rroxscaffold_5G00353910 Rroxscaffold_7G00180510
rosa_rugosa	Rorug04G0093400 Rorug06G0194200
rosa_samantha	Rh4AG155900 Rh4BG155100 Rh4CG165200 Rh4DG149000 Rh5BG102300 Rh6AG304400 Rh6BG310400 Rh6CG318500 Rh6DG303400
rosa_wichuraiana	Rw4G012760 Rw6G026340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	394
AciI	CCGC	2 cut(s)	394, 586
AclWI	GGATC	1 cut(s)	589
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	200
AfaI	GTAC	4 cut(s)	132, 371, 552, 608
AgsI	TTSAA	4 cut(s)	101, 208, 239, 422
Alw26I	GTCTC	1 cut(s)	495
AlwI	GGATC	1 cut(s)	589
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	582
AsuHPI	GGTGA	1 cut(s)	397
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	1 cut(s)	93
BbvI	GCAGC	1 cut(s)	594
BccI	CCATC	1 cut(s)	95
BcoDI	GTCTC	1 cut(s)	495
BfaI	CTAG	2 cut(s)	68, 616
BisI	GCNGC	2 cut(s)	583, 586
BlsI	GCNGC	2 cut(s)	584, 587
BmcAI	AGTACT	1 cut(s)	371
BmiI	GGNNCC	1 cut(s)	527
BmsI	GCATC	2 cut(s)	174, 441
BsaAI	YACGTR	1 cut(s)	554
BsaJI	CCNNGG	1 cut(s)	427
BseDI	CCNNGG	1 cut(s)	427
BseGI	GGATG	2 cut(s)	37, 87
BseMII	CTCAG	1 cut(s)	459
BseRI	GAGGAG	1 cut(s)	266
BseXI	GCAGC	1 cut(s)	594
BseYI	CCCAGC	1 cut(s)	279
BshFI	GGCC	1 cut(s)	5
BsmAI	GTCTC	1 cut(s)	495
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	2 cut(s)	255, 594
Bsp19I	CCATGG	1 cut(s)	427
BspACI	CCGC	2 cut(s)	394, 586
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	460
BspLI	GGNNCC	1 cut(s)	527
BspPI	GGATC	1 cut(s)	589
BspQI	GCTCTTC	1 cut(s)	100
BsrBI	CCGCTC	1 cut(s)	394
BssECI	CCNNGG	1 cut(s)	427
BssMI	GATC	2 cut(s)	255, 594
BssSI	CACGAG	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	427
Bst2BI	CACGAG	1 cut(s)	93
Bst4CI	ACNGT	3 cut(s)	325, 374, 604
Bst6I	CTCTTC	1 cut(s)	100
BstBAI	YACGTR	1 cut(s)	554
BstDEI	CTNAG	1 cut(s)	468
BstDSI	CCRYGG	1 cut(s)	427
BstF5I	GGATG	2 cut(s)	37, 87
BstKTI	GATC	2 cut(s)	258, 597
BstMAI	GTCTC	1 cut(s)	495
BstMBI	GATC	2 cut(s)	255, 594
BstV1I	GCAGC	1 cut(s)	594
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	427
BtgZI	GCGATG	1 cut(s)	106
BtsCI	GGATG	2 cut(s)	37, 87
BtsIMutI	CAGTG	2 cut(s)	223, 359
CseI	GACGC	1 cut(s)	398
Csp6I	GTAC	4 cut(s)	131, 370, 551, 607
CviAII	CATG	2 cut(s)	268, 428
CviJI	RGCY	6 cut(s)	5, 170, 297, 404, 416, 585
CviKI_1	RGCY	6 cut(s)	5, 170, 297, 404, 416, 585
CviQI	GTAC	4 cut(s)	131, 370, 551, 607
DdeI	CTNAG	1 cut(s)	468
DpnI	GATC	2 cut(s)	257, 596
DpnII	GATC	2 cut(s)	255, 594
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	100
EarI	CTCTTC	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	427
Eco32I	GATATC	1 cut(s)	17
Eco57I	CTGAAG	1 cut(s)	200
EcoRV	GATATC	1 cut(s)	17
EcoT14I	CCWWGG	1 cut(s)	427
ErhI	CCWWGG	1 cut(s)	427
FaeI	CATG	2 cut(s)	271, 431
FaiI	YATR	6 cut(s)	269, 401, 429, 462, 512, 523
FatI	CATG	2 cut(s)	267, 427
Fnu4HI	GCNGC	2 cut(s)	583, 586
FokI	GGATG	2 cut(s)	44, 74
Fsp4HI	GCNGC	2 cut(s)	583, 586
FspBI	CTAG	2 cut(s)	68, 616
GluI	GCNGC	2 cut(s)	583, 586
GsaI	CCCAGC	1 cut(s)	283
HaeIII	GGCC	1 cut(s)	5
HgaI	GACGC	1 cut(s)	398
Hin1II	CATG	2 cut(s)	271, 431
HinfI	GANTC	1 cut(s)	503
HphI	GGTGA	1 cut(s)	397
Hpy166II	GTNNAC	3 cut(s)	230, 551, 607
Hpy188I	TCNGA	3 cut(s)	176, 309, 469
Hpy8I	GTNNAC	3 cut(s)	230, 551, 607
HpyAV	CCTTC	4 cut(s)	90, 265, 337, 572
HpyCH4III	ACNGT	3 cut(s)	325, 374, 604
HpyCH4IV	ACGT	1 cut(s)	553
HpyCH4V	TGCA	2 cut(s)	187, 569
HpyF3I	CTNAG	1 cut(s)	468
HpySE526I	ACGT	1 cut(s)	553
Hsp92II	CATG	2 cut(s)	271, 431
Kzo9I	GATC	2 cut(s)	255, 594
LguI	GCTCTTC	1 cut(s)	100
LmnI	GCTCC	1 cut(s)	153
LpnPI	CCDG	3 cut(s)	246, 265, 398
Lsp1109I	GCAGC	1 cut(s)	594
LweI	GCATC	2 cut(s)	174, 441
MaeI	CTAG	2 cut(s)	68, 616
MaeII	ACGT	1 cut(s)	553
MaeIII	GTNAC	1 cut(s)	478
MalI	GATC	2 cut(s)	257, 596
MbiI	CCGCTC	1 cut(s)	394
MboI	GATC	2 cut(s)	255, 594
MboII	GAAGA	3 cut(s)	75, 117, 193
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	495
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	497
MmeI	TCCRAC	1 cut(s)	131
MnlI	CCTC	5 cut(s)	160, 210, 244, 376, 463
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	38, 329, 354
Msp20I	TGGCCA	1 cut(s)	5
NcoI	CCATGG	1 cut(s)	427
NdeII	GATC	2 cut(s)	255, 594
NlaIII	CATG	2 cut(s)	271, 431
NlaIV	GGNNCC	1 cut(s)	527
NmeAIII	GCCGAG	1 cut(s)	430
PciSI	GCTCTTC	1 cut(s)	100
PkrI	GCNGC	2 cut(s)	584, 587
PleI	GAGTC	1 cut(s)	497
PpsI	GAGTC	1 cut(s)	497
Ppu21I	YACGTR	1 cut(s)	554
PspFI	CCCAGC	1 cut(s)	279
PspN4I	GGNNCC	1 cut(s)	527
RsaI	GTAC	4 cut(s)	132, 371, 552, 608
RsaNI	GTAC	4 cut(s)	131, 370, 551, 607
SapI	GCTCTTC	1 cut(s)	100
SaqAI	TTAA	3 cut(s)	38, 329, 354
SatI	GCNGC	2 cut(s)	583, 586
Sau3AI	GATC	2 cut(s)	255, 594
ScaI	AGTACT	1 cut(s)	371
SchI	GAGTC	1 cut(s)	497
SetI	ASST	5 cut(s)	235, 387, 474, 556, 617
SfaNI	GCATC	2 cut(s)	174, 441
Sse9I	AATT	1 cut(s)	495
SsiI	CCGC	2 cut(s)	394, 586
SspI	AATATT	1 cut(s)	352
SspMI	CTAG	2 cut(s)	68, 616
StyI	CCWWGG	1 cut(s)	427
TaaI	ACNGT	3 cut(s)	325, 374, 604
TaiI	ACGT	1 cut(s)	556
TasI	AATT	1 cut(s)	495
TatI	WGTACW	2 cut(s)	369, 606
TauI	GCSGC	1 cut(s)	588
Tru1I	TTAA	3 cut(s)	38, 329, 354
Tru9I	TTAA	3 cut(s)	38, 329, 354
TscAI	CASTG	2 cut(s)	223, 366
TseI	GCWGC	1 cut(s)	582
TspDTI	ATGAA	1 cut(s)	284
TspRI	CASTG	2 cut(s)	223, 366
XspI	CTAG	2 cut(s)	68, 616
ZrmI	AGTACT	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.