Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002467

Physical Location & Seq

Genomic Coordinates Forward (+)

9307247 .. 9307879

Gene Structure 633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG102300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGAAGGAACGCTGGGAAACTACTGATAGCCCAATAGTTCGCAAAATTCAGGATATCAATGAAGCTATTTTTCCAAAAACAAATGCTGCAGCAATAATTAAGGAGATCCATGCCCGAGATCTATCTTTCTCTTTACCAGATTTTGTGGTAGAGGTTCAGAATGTGGTCAAAACTGTGTTAAATGCTTACATGAAGGGAGATATTAAAGCACTGAACAAGTACTGTGCTGATGAGGTGATTGAGCGGTGTATAGCCGAGCGTCAGGCTTTTCAAAGCCATGGCATCTTTTTTGATAACAAGATTCTACATATCTCTGAGGTGGAAGTAACAGAAACCAAACTAATTGGAGACTCTCCCATCATCATTTTAGGGTTCCAAACACAACAAGTCTATTGTGTACGTGATAAAAATGGTGCAATAACACAAGGCAGCCACGATACGATCCAAACCGTGTACTACACCTGGGACATGCAACCTTGGGATCCTGAAGAACTTCCTCAAGGTGCTATTTTCCCAATATGGAGAGTAAGAGAGATCAGGGCCGGAACTGAAAATTTAGAGGCTCGAGGCGTATTATTTTGTGGAATTGACAGTTGTGACCTTCTAGAGTTATTTGAAATGATTGAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0005759 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015440 GO:0015450 GO:0015462 GO:0015833 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017038 GO:0017111 GO:0019866 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0032991 GO:0033036 GO:0033220 GO:0033365 GO:0034613 GO:0042623 GO:0042626 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098796 GO:0098798 GO:0098800 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim44

Protein Analysis

210

Amino Acids

24.04

Weight (kDa)

4.78

Isoelectric Point (pI)

40.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim44	PF04280	30 - 179	3.8e-33	Tim44-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20510 AT2G20510 AT2G20510 AT2G20510 AT2G36070
fragaria_vesca	FvH4_2g21470 FvH4_2g21470 FvH4_4g12040 FvH4_4g12040 FvH4_4g12040 FvH4_4g12040
malus_domestica	MD05G1197100.v1.1 MD09G1008600.v1.1
prunus_persica	Prupe.8G223600_v2.0.a1
pyrus_communis	pycom05g18420 pycom10g15910
rosa_chinensis	RchiOBHm_Chr4g0409381 RchiOBHm_Chr5g0013581 RchiOBHm_Chr6g0288111
rosa_laevigata	RLG00000012438 RLG00000032032
rosa_multiflora	Rmu_co8365065.1_g000001 Rmu_sc0001616.1_g000049 Rmu_sc0001851.1_g000030 Rmu_sc0010766.1_g000003
rosa_roxburghii	Rroxscaffold_1G00062990 Rroxscaffold_5G00353910 Rroxscaffold_7G00180510
rosa_rugosa	Rorug04G0093400 Rorug06G0194200
rosa_samantha	Rh4AG155900 Rh4BG155100 Rh4CG165200 Rh4DG149000 Rh5BG102300 Rh6AG304400 Rh6BG310400 Rh6CG318500 Rh6DG303400
rosa_wichuraiana	Rw4G012760 Rw6G026340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	244
AciI	CCGC	1 cut(s)	244
AclWI	GGATC	4 cut(s)	100, 436, 476, 489
AcsI	RAATTY	3 cut(s)	45, 553, 627
AcuI	CTGAAG	1 cut(s)	507
AfaI	GTAC	3 cut(s)	221, 399, 455
AgsI	TTSAA	3 cut(s)	272, 617, 626
AjnI	CCWGG	1 cut(s)	461
AluBI	AGCT	1 cut(s)	65
AluI	AGCT	1 cut(s)	65
Alw26I	GTCTC	1 cut(s)	342
AlwI	GGATC	4 cut(s)	100, 436, 476, 489
Ama87I	CYCGRG	2 cut(s)	114, 564
AoxI	GGCC	1 cut(s)	540
ApeKI	GCWGC	3 cut(s)	86, 89, 429
ApoI	RAATTY	3 cut(s)	45, 553, 627
Asp700I	GAANNNNTTC	1 cut(s)	492
AspS9I	GGNCC	1 cut(s)	540
AsuHPI	GGTGA	1 cut(s)	247
AvaI	CYCGRG	2 cut(s)	114, 564
BamHI	GGATCC	1 cut(s)	481
BbvI	GCAGC	3 cut(s)	73, 101, 441
BccI	CCATC	1 cut(s)	365
BciT130I	CCWGG	1 cut(s)	463
BcoDI	GTCTC	1 cut(s)	342
BfaI	CTAG	1 cut(s)	605
BfmI	CTRYAG	1 cut(s)	87
BglII	AGATCT	1 cut(s)	118
BisI	GCNGC	3 cut(s)	87, 90, 430
BlsI	GCNGC	3 cut(s)	88, 91, 431
BmcAI	AGTACT	1 cut(s)	221
Bme1390I	CCNGG	1 cut(s)	463
BmeT110I	CYCGRG	2 cut(s)	114, 564
BmgT120I	GGNCC	1 cut(s)	540
BmiI	GGNNCC	2 cut(s)	374, 483
BmrFI	CCNGG	1 cut(s)	463
BmsI	GCATC	1 cut(s)	291
BpuEI	CTTGAG	1 cut(s)	483
BsaAI	YACGTR	1 cut(s)	401
BsaJI	CCNNGG	3 cut(s)	277, 462, 476
BseBI	CCWGG	1 cut(s)	463
BseDI	CCNNGG	3 cut(s)	277, 462, 476
BseMII	CTCAG	1 cut(s)	306
BseXI	GCAGC	3 cut(s)	73, 101, 441
BseYI	CCCAGC	1 cut(s)	12
BshFI	GGCC	1 cut(s)	542
BsiHKCI	CYCGRG	2 cut(s)	114, 564
BsiSI	CCGG	1 cut(s)	543
BslFI	GGGAC	1 cut(s)	479
BsmAI	GTCTC	1 cut(s)	342
BsmFI	GGGAC	1 cut(s)	479
BsnI	GGCC	1 cut(s)	542
BsoBI	CYCGRG	2 cut(s)	114, 564
Bsp143I	GATC	5 cut(s)	105, 118, 441, 481, 534
Bsp19I	CCATGG	1 cut(s)	277
BspACI	CCGC	1 cut(s)	244
BspANI	GGCC	1 cut(s)	542
BspCNI	CTCAG	1 cut(s)	307
BspLI	GGNNCC	2 cut(s)	374, 483
BspMAI	CTGCAG	1 cut(s)	91
BspPI	GGATC	4 cut(s)	100, 436, 476, 489
BsrBI	CCGCTC	1 cut(s)	244
BssECI	CCNNGG	3 cut(s)	277, 462, 476
BssMI	GATC	5 cut(s)	105, 118, 441, 481, 534
BssT1I	CCWWGG	2 cut(s)	277, 476
Bst2UI	CCWGG	1 cut(s)	463
Bst4CI	ACNGT	4 cut(s)	175, 224, 451, 593
BstBAI	YACGTR	1 cut(s)	401
BstDEI	CTNAG	1 cut(s)	315
BstDSI	CCRYGG	1 cut(s)	277
BstKTI	GATC	5 cut(s)	108, 121, 444, 484, 537
BstMAI	GTCTC	1 cut(s)	342
BstMBI	GATC	5 cut(s)	105, 118, 441, 481, 534
BstNI	CCWGG	1 cut(s)	463
BstNSI	RCATGY	1 cut(s)	472
BstSCI	CCNGG	1 cut(s)	461
BstSFI	CTRYAG	1 cut(s)	87
BstV1I	GCAGC	3 cut(s)	73, 101, 441
BstX2I	RGATCY	3 cut(s)	105, 118, 481
BstYI	RGATCY	3 cut(s)	105, 118, 481
BsuRI	GGCC	1 cut(s)	542
BtgI	CCRYGG	1 cut(s)	277
BtsIMutI	CAGTG	1 cut(s)	209
Cfr13I	GGNCC	1 cut(s)	540
CseI	GACGC	1 cut(s)	248
Csp6I	GTAC	3 cut(s)	220, 398, 454
CviAII	CATG	4 cut(s)	110, 190, 278, 469
CviJI	RGCY	8 cut(s)	30, 65, 254, 266, 276, 432, 542, 563
CviKI_1	RGCY	8 cut(s)	30, 65, 254, 266, 276, 432, 542, 563
CviQI	GTAC	3 cut(s)	220, 398, 454
DdeI	CTNAG	1 cut(s)	315
DpnI	GATC	5 cut(s)	107, 120, 443, 483, 536
DpnII	GATC	5 cut(s)	105, 118, 441, 481, 534
Eco130I	CCWWGG	2 cut(s)	277, 476
Eco32I	GATATC	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	507
Eco88I	CYCGRG	2 cut(s)	114, 564
EcoRII	CCWGG	1 cut(s)	461
EcoRV	GATATC	1 cut(s)	55
EcoT14I	CCWWGG	2 cut(s)	277, 476
ErhI	CCWWGG	2 cut(s)	277, 476
FaeI	CATG	4 cut(s)	113, 193, 281, 472
FaiI	YATR	7 cut(s)	111, 191, 251, 279, 309, 470, 520
FaqI	GGGAC	1 cut(s)	479
FatI	CATG	4 cut(s)	109, 189, 277, 468
Fnu4HI	GCNGC	3 cut(s)	87, 90, 430
Fsp4HI	GCNGC	3 cut(s)	87, 90, 430
FspBI	CTAG	1 cut(s)	605
GluI	GCNGC	3 cut(s)	87, 90, 430
GsaI	CCCAGC	1 cut(s)	16
HaeIII	GGCC	1 cut(s)	542
HapII	CCGG	1 cut(s)	543
HgaI	GACGC	1 cut(s)	248
Hin1II	CATG	4 cut(s)	113, 193, 281, 472
HinfI	GANTC	2 cut(s)	301, 350
HpaII	CCGG	1 cut(s)	543
HphI	GGTGA	1 cut(s)	247
Hpy166II	GTNNAC	2 cut(s)	398, 454
Hpy188I	TCNGA	2 cut(s)	159, 316
Hpy188III	TCNNGA	3 cut(s)	50, 485, 605
Hpy8I	GTNNAC	2 cut(s)	398, 454
HpyAV	CCTTC	2 cut(s)	187, 611
HpyCH4III	ACNGT	4 cut(s)	175, 224, 451, 593
HpyCH4IV	ACGT	1 cut(s)	400
HpyCH4V	TGCA	3 cut(s)	89, 416, 472
HpyF3I	CTNAG	1 cut(s)	315
HpySE526I	ACGT	1 cut(s)	400
Hsp92II	CATG	4 cut(s)	113, 193, 281, 472
Kzo9I	GATC	5 cut(s)	105, 118, 441, 481, 534
LpnPI	CCDG	8 cut(s)	35, 150, 248, 448, 475, 498, 523, 556
Lsp1109I	GCAGC	3 cut(s)	73, 101, 441
LweI	GCATC	1 cut(s)	291
MaeI	CTAG	1 cut(s)	605
MaeII	ACGT	1 cut(s)	400
MaeIII	GTNAC	2 cut(s)	325, 596
MalI	GATC	5 cut(s)	107, 120, 443, 483, 536
MbiI	CCGCTC	1 cut(s)	244
MboI	GATC	5 cut(s)	105, 118, 441, 481, 534
MboII	GAAGA	1 cut(s)	500
MflI	RGATCY	3 cut(s)	105, 118, 481
MluCI	AATT	6 cut(s)	45, 96, 342, 553, 585, 627
MlyI	GAGTC	1 cut(s)	344
MnlI	CCTC	6 cut(s)	145, 226, 310, 507, 553, 560
MroXI	GAANNNNTTC	1 cut(s)	492
MseI	TTAA	4 cut(s)	99, 179, 204, 631
MspI	CCGG	1 cut(s)	543
MspR9I	CCNGG	1 cut(s)	463
MvaI	CCWGG	1 cut(s)	463
NcoI	CCATGG	1 cut(s)	277
NdeII	GATC	5 cut(s)	105, 118, 441, 481, 534
NlaIII	CATG	4 cut(s)	113, 193, 281, 472
NlaIV	GGNNCC	2 cut(s)	374, 483
NmeAIII	GCCGAG	1 cut(s)	280
NmuCI	GTSAC	1 cut(s)	596
NspI	RCATGY	1 cut(s)	472
PaeR7I	CTCGAG	1 cut(s)	564
PdmI	GAANNNNTTC	1 cut(s)	492
PfeI	GAWTC	1 cut(s)	301
PkrI	GCNGC	3 cut(s)	88, 91, 431
PleI	GAGTC	1 cut(s)	344
PpsI	GAGTC	1 cut(s)	344
Ppu21I	YACGTR	1 cut(s)	401
Psp6I	CCWGG	1 cut(s)	461
PspFI	CCCAGC	1 cut(s)	12
PspGI	CCWGG	1 cut(s)	461
PspN4I	GGNNCC	2 cut(s)	374, 483
PspPI	GGNCC	1 cut(s)	540
PspXI	VCTCGAGB	1 cut(s)	564
PstI	CTGCAG	1 cut(s)	91
PsuI	RGATCY	3 cut(s)	105, 118, 481
RsaI	GTAC	3 cut(s)	221, 399, 455
RsaNI	GTAC	3 cut(s)	220, 398, 454
SaqAI	TTAA	4 cut(s)	99, 179, 204, 631
SatI	GCNGC	3 cut(s)	87, 90, 430
Sau3AI	GATC	5 cut(s)	105, 118, 441, 481, 534
Sau96I	GGNCC	1 cut(s)	540
ScaI	AGTACT	1 cut(s)	221
SchI	GAGTC	1 cut(s)	344
ScrFI	CCNGG	1 cut(s)	463
SetI	ASST	9 cut(s)	67, 156, 237, 321, 403, 464, 478, 505, 603
SfaNI	GCATC	1 cut(s)	291
SfcI	CTRYAG	1 cut(s)	87
Sfr274I	CTCGAG	1 cut(s)	564
SlaI	CTCGAG	1 cut(s)	564
SmlI	CTYRAG	2 cut(s)	498, 564
SmoI	CTYRAG	2 cut(s)	498, 564
Sse9I	AATT	6 cut(s)	45, 96, 342, 553, 585, 627
SsiI	CCGC	1 cut(s)	244
SspMI	CTAG	1 cut(s)	605
StyD4I	CCNGG	1 cut(s)	461
StyI	CCWWGG	2 cut(s)	277, 476
TaaI	ACNGT	4 cut(s)	175, 224, 451, 593
TaiI	ACGT	1 cut(s)	403
TaqI	TCGA	1 cut(s)	565
TasI	AATT	6 cut(s)	45, 96, 342, 553, 585, 627
TatI	WGTACW	2 cut(s)	219, 453
TfiI	GAWTC	1 cut(s)	301
Tru1I	TTAA	4 cut(s)	99, 179, 204, 631
Tru9I	TTAA	4 cut(s)	99, 179, 204, 631
TscAI	CASTG	1 cut(s)	216
TseFI	GTSAC	1 cut(s)	596
TseI	GCWGC	3 cut(s)	86, 89, 429
Tsp45I	GTSAC	1 cut(s)	596
TspDTI	ATGAA	3 cut(s)	17, 75, 206
TspRI	CASTG	1 cut(s)	216
XapI	RAATTY	3 cut(s)	45, 553, 627
XbaI	TCTAGA	1 cut(s)	604
XceI	RCATGY	1 cut(s)	472
XhoI	CTCGAG	1 cut(s)	564
XmnI	GAANNNNTTC	1 cut(s)	492
XspI	CTAG	1 cut(s)	605
ZrmI	AGTACT	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.