AT2G20510

Mitochondrial import inner membrane translocase subunit

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
8836018 .. 8838710
2693 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G20510.3

Sequence Viewer

Length: 1419 bp
ATGGCGATTAGAAAGATAATTCGAGATTTACTGATCACAAAGCAGCCTCTTTTACGTCAACTATTCCACCAACGAAGAGCAAACGCAAGATCAGAGTTTCTTCCTGCTATTGGGTATACGAGTCATCGCCGGTTCAGCGTTTTCACCGAGTTCTCGAAGAATATTAGAGGAGAAGCTCATAGCAATCCTGAATTTGAAAGAACAGTAAAGGAGCTCAAGGAAAGAACAGAAGAGTTTAAAGGTGTAACAGAGGACCTGAAAGTGAGAACGAAACAAACGACTGAAAAGCTTTACAAGCAAGCTGATGGTGTGTGGACTGAGGCTGAATCTGCGGCCAAAAAGGTCTCTTCAAGTGTGAAAGACAAGCTCTCAGCAGCCAGTGAAGAGGTCAAGGAGTCATTCAAGCTCGGGAAGGAGGAGAATGCAGAGTCAGCGAGTTCATCAGGCACAAGAGCCTCTCAAGGAGAAAAACAGCAATCAGGTTCTACGGAGGAACTACATACATTTTTTGCAAAATTCAAGTCAAGTCTTTCTTCACCAAAGGTATCCGAGGTGTTTTACAGGCTGAAGGAAGCCAAACCCTTTGATATAGTAAAGCAAGCACTTGACATTGTGAAGGATGAGTTACGTGGGAACCCATCTAGAAAAAAGTTCCTGGAACATACACCTCCCCCGCCATTCACCGGTGAGAGAAGTATGAGAACAGAGATGGTGGTTACGCAAACAAAACAGTCTAAGTTGCAACAAAAGTGGGAATCCTTTAGAGAAAAGATGCAAGGTTCTCCTGTATTTAAACGTCTAAGCGGAATGAGTGAGCCTGTTGTCAACAAGAGCCAAGAGATTGCAGAAGATGTGAGGGAAATATGGGAAACCAGTGATAATCCAATTGTTCACAAGATTCAGGACATGAATGAGAAGTTCTTGAAGGAAACAGATTCTGCATCAACTTACAAAGAGATACGCAGCCGAGACCCATCGTTCTCCTTGCCAGACTTTGCTGCAGAAATTGAGGAAGTCATCAAACCAGTCTTGAATGCATACAGTGAGGGAGATGTTGAGACCTTGAAGAAGTATTGCAGCAAGGAAGTGATTGAACGGTGCACGGCAGAGCGCACAGCTTACCAAACTCATGGTGTCCTTTTCGATAACAAGCTTCTGCATATATCTGAAGTCTCAGTTTCTGTGACAAAGATGATGGGAGATTCCCCAATAATCATCGCTAAGTTCCAAACGCAAGAAATCTACTGCGTTCGTGACGAGAATGGAGAAATCCAAGAAGGTGGGCAGGACACGATACACACGGTGTACCATGAATGGGCAATGCAACAAGTGGAGACAACAGAATTAGGGGAAGATGCTATTTATCCCATTTGGAGGCTCAGAGAGATGTGTAGAAATGGTGTTCAAGCTCTCATTTAA

Protein Analysis

472

Amino Acids

54.09

Weight (kDa)

6.61

Isoelectric Point (pI)

52.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tim44 PF04280 315 - 466 3.7e-39 Tim44-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 116
AciI CCGC 3 cut(s) 332, 674, 804
AcoI YGGCCR 1 cut(s) 333
AcsI RAATTY 2 cut(s) 191, 515
AcuI CTGAAG 2 cut(s) 587, 1188
AdeI CACNNNGTG 1 cut(s) 1303
AfaI GTAC 1 cut(s) 1307
AfiI CCNNNNNNNGG 4 cut(s) 110, 683, 1315, 1374
AgeI ACCGGT 1 cut(s) 683
AgsI TTSAA 9 cut(s) 197, 351, 403, 520, 925, 1033, 1066, 1094, 1406
AjnI CCWGG 1 cut(s) 654
AluBI AGCT 9 cut(s) 176, 214, 289, 302, 367, 406, 1118, 1153, 1409
AluI AGCT 9 cut(s) 176, 214, 289, 302, 367, 406, 1118, 1153, 1409
Alw21I GWGCWC 2 cut(s) 216, 1103
Alw26I GTCTC 5 cut(s) 349, 963, 1052, 1177, 1328
Alw44I GTGCAC 1 cut(s) 1099
AlwNI CAGNNNCTG 2 cut(s) 938, 1181
Ama87I CYCGRG 1 cut(s) 407
AoxI GGCC 1 cut(s) 333
ApaLI GTGCAC 1 cut(s) 1099
ApeKI GCWGC 5 cut(s) 43, 374, 963, 998, 1077
ApoI RAATTY 2 cut(s) 191, 515
ArsI GACNNNNNNTTYG 2 cut(s) 506, 538
AsiGI ACCGGT 1 cut(s) 683
AspLEI GCGC 1 cut(s) 1113
AspS9I GGNCC 1 cut(s) 253
AsuHPI GGTGA 4 cut(s) 136, 528, 673, 698
AvaI CYCGRG 1 cut(s) 407
AvaII GGWCC 1 cut(s) 253
BaeGI GKGCMC 1 cut(s) 1103
BanII GRGCYC 1 cut(s) 216
Bbv12I GWGCWC 2 cut(s) 216, 1103
BbvI GCAGC 5 cut(s) 55, 386, 975, 985, 1089
BccI CCATC 5 cut(s) 299, 646, 703, 982, 1189
BceAI ACGGC 1 cut(s) 1119
BciT130I CCWGG 1 cut(s) 656
BciVI GTATCC 1 cut(s) 556
BclI TGATCA 1 cut(s) 33
BcoDI GTCTC 5 cut(s) 349, 963, 1052, 1177, 1328
BfaI CTAG 1 cut(s) 642
BfmI CTRYAG 1 cut(s) 999
BfuI GTATCC 1 cut(s) 556
BisI GCNGC 6 cut(s) 44, 333, 375, 964, 999, 1078
BlsI GCNGC 6 cut(s) 45, 334, 376, 965, 1000, 1079
Bme1390I CCNGG 1 cut(s) 656
Bme18I GGWCC 1 cut(s) 253
BmeT110I CYCGRG 1 cut(s) 407
BmgT120I GGNCC 1 cut(s) 253
BmiI GGNNCC 1 cut(s) 635
BmrFI CCNGG 1 cut(s) 656
BmsI GCATC 3 cut(s) 762, 950, 1345
BpuEI CTTGAG 2 cut(s) 200, 444
BsaAI YACGTR 1 cut(s) 629
BsaI GGTCTC 3 cut(s) 349, 963, 1052
BsaJI CCNNGG 1 cut(s) 549
BsaWI WCCGGW 1 cut(s) 683
Bsc4I CCNNNNNNNGG 4 cut(s) 110, 683, 1315, 1374
Bse118I RCCGGY 2 cut(s) 129, 683
Bse1I ACTGG 3 cut(s) 378, 873, 1025
Bse3DI GCAATG 1 cut(s) 1326
BseBI CCWGG 1 cut(s) 656
BseDI CCNNGG 1 cut(s) 549
BseGI GGATG 1 cut(s) 625
BseLI CCNNNNNNNGG 4 cut(s) 110, 683, 1315, 1374
BseMI GCAATG 1 cut(s) 1326
BseMII CTCAG 4 cut(s) 309, 384, 1188, 1393
BseNI ACTGG 3 cut(s) 378, 873, 1025
BseRI GAGGAG 2 cut(s) 183, 431
BseSI GKGCMC 1 cut(s) 1103
BseXI GCAGC 5 cut(s) 55, 386, 975, 985, 1089
BshFI GGCC 1 cut(s) 335
BshTI ACCGGT 1 cut(s) 683
BsiHKAI GWGCWC 2 cut(s) 216, 1103
BsiHKCI CYCGRG 1 cut(s) 407
BsiSI CCGG 2 cut(s) 130, 684
BslI CCNNNNNNNGG 4 cut(s) 110, 683, 1315, 1374
BsmAI GTCTC 5 cut(s) 349, 963, 1052, 1177, 1328
BsmI GAATGC 2 cut(s) 427, 1039
BsnI GGCC 1 cut(s) 335
Bso31I GGTCTC 3 cut(s) 349, 963, 1052
BsoBI CYCGRG 1 cut(s) 407
Bsp1286I GDGCHC 2 cut(s) 216, 1103
Bsp143I GATC 2 cut(s) 33, 89
BspACI CCGC 3 cut(s) 332, 674, 804
BspANI GGCC 1 cut(s) 335
BspCNI CTCAG 4 cut(s) 310, 383, 1187, 1392
BspLI GGNNCC 1 cut(s) 635
BspMAI CTGCAG 1 cut(s) 1003
BspQI GCTCTTC 1 cut(s) 70
BspTNI GGTCTC 3 cut(s) 349, 963, 1052
BsrDI GCAATG 1 cut(s) 1326
BsrFI RCCGGY 2 cut(s) 129, 683
BsrI ACTGG 3 cut(s) 378, 873, 1025
BssAI RCCGGY 2 cut(s) 129, 683
BssECI CCNNGG 1 cut(s) 549
BssMI GATC 2 cut(s) 33, 89
BssNAI GTATAC 1 cut(s) 117
Bst1107I GTATAC 1 cut(s) 117
Bst2UI CCWGG 1 cut(s) 656
Bst4CI ACNGT 5 cut(s) 205, 732, 1043, 1098, 1303
Bst6I CTCTTC 4 cut(s) 70, 225, 352, 378
BstBAI YACGTR 1 cut(s) 629
BstC8I GCNNGC 2 cut(s) 300, 600
BstDEI CTNAG 7 cut(s) 318, 370, 735, 800, 1174, 1221, 1379
BstF5I GGATG 1 cut(s) 625
BstHHI GCGC 1 cut(s) 1113
BstKTI GATC 2 cut(s) 36, 92
BstMAI GTCTC 5 cut(s) 349, 963, 1052, 1177, 1328
BstMBI GATC 2 cut(s) 33, 89
BstMWI GCNNNNNNNGC 4 cut(s) 135, 295, 329, 431
BstNI CCWGG 1 cut(s) 656
BstSCI CCNGG 1 cut(s) 654
BstSFI CTRYAG 1 cut(s) 999
BstSLI GKGCMC 1 cut(s) 1103
BstV1I GCAGC 5 cut(s) 55, 386, 975, 985, 1089
BstXI CCANNNNNNTGG 2 cut(s) 1130, 1280
BstZ17I GTATAC 1 cut(s) 117
BsuI GTATCC 1 cut(s) 556
BsuRI GGCC 1 cut(s) 335
BtgZI GCGATG 2 cut(s) 110, 1201
BtsCI GGATG 1 cut(s) 625
BtsIMutI CAGTG 3 cut(s) 385, 880, 1048
Cac8I GCNNGC 2 cut(s) 300, 600
CaiI CAGNNNCTG 2 cut(s) 938, 1181
CfoI GCGC 1 cut(s) 1113
Cfr10I RCCGGY 2 cut(s) 129, 683
Cfr13I GGNCC 1 cut(s) 253
Csp6I GTAC 1 cut(s) 1306
CspAI ACCGGT 1 cut(s) 683
CspCI CAANNNNNGTGG 2 cut(s) 731, 766
CviAII CATG 3 cut(s) 907, 1130, 1310
CviQI GTAC 1 cut(s) 1306
DdeI CTNAG 7 cut(s) 318, 370, 735, 800, 1174, 1221, 1379
DpnI GATC 2 cut(s) 35, 91
DpnII GATC 2 cut(s) 33, 89
DraI TTTAAA 2 cut(s) 238, 793
DraIII CACNNNGTG 1 cut(s) 1303
EaeI YGGCCR 1 cut(s) 333
Eam1104I CTCTTC 4 cut(s) 70, 225, 352, 378
EarI CTCTTC 4 cut(s) 70, 225, 352, 378
Ecl136II GAGCTC 1 cut(s) 214
Eco24I GRGCYC 1 cut(s) 216
Eco31I GGTCTC 3 cut(s) 349, 963, 1052
Eco47I GGWCC 1 cut(s) 253
Eco53kI GAGCTC 1 cut(s) 214
Eco57I CTGAAG 2 cut(s) 587, 1188
Eco88I CYCGRG 1 cut(s) 407
EcoICRI GAGCTC 1 cut(s) 214
EcoO109I RGGNCCY 1 cut(s) 253
EcoRII CCWGG 1 cut(s) 654
EcoT22I ATGCAT 1 cut(s) 1039
EcoT38I GRGCYC 1 cut(s) 216
FaeI CATG 3 cut(s) 910, 1133, 1313
FalI AAGNNNNNCTT 2 cut(s) 517, 549
FatI CATG 3 cut(s) 906, 1129, 1309
FauI CCCGC 1 cut(s) 681
FbaI TGATCA 1 cut(s) 33
FblI GTMKAC 1 cut(s) 116
Fnu4HI GCNGC 6 cut(s) 44, 333, 375, 964, 999, 1078
FokI GGATG 1 cut(s) 632
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 6 cut(s) 44, 333, 375, 964, 999, 1078
FspBI CTAG 1 cut(s) 642
GlaI GCGC 1 cut(s) 1112
GluI GCNGC 6 cut(s) 44, 333, 375, 964, 999, 1078
HaeIII GGCC 1 cut(s) 335
HapII CCGG 2 cut(s) 130, 684
HhaI GCGC 1 cut(s) 1113
Hin1II CATG 3 cut(s) 910, 1133, 1313
Hin6I GCGC 1 cut(s) 1111
HinP1I GCGC 1 cut(s) 1111
HincII GTYRAC 2 cut(s) 59, 826
HindII GTYRAC 2 cut(s) 59, 826
HindIII AAGCTT 2 cut(s) 287, 1151
HinfI GANTC 8 cut(s) 121, 326, 395, 428, 755, 898, 935, 1202
HpaII CCGG 2 cut(s) 130, 684
HphI GGTGA 4 cut(s) 136, 528, 673, 698
Hpy166II GTNNAC 7 cut(s) 59, 117, 315, 826, 892, 1101, 1306
Hpy188I TCNGA 4 cut(s) 94, 550, 1168, 1382
Hpy188III TCNNGA 9 cut(s) 23, 154, 188, 409, 642, 902, 922, 1030, 1253
Hpy8I GTNNAC 7 cut(s) 59, 117, 315, 826, 892, 1101, 1306
HpyAV CCTTC 5 cut(s) 406, 562, 610, 919, 1271
HpyCH4III ACNGT 5 cut(s) 205, 732, 1043, 1098, 1303
HpyCH4IV ACGT 3 cut(s) 55, 628, 796
HpyF10VI GCNNNNNNNGC 4 cut(s) 135, 295, 329, 431
HpyF3I CTNAG 7 cut(s) 318, 370, 735, 800, 1174, 1221, 1379
HpySE526I ACGT 3 cut(s) 55, 628, 796
Hsp92II CATG 3 cut(s) 910, 1133, 1313
HspAI GCGC 1 cut(s) 1111
Ksp22I TGATCA 1 cut(s) 33
Kzo9I GATC 2 cut(s) 33, 89
LguI GCTCTTC 1 cut(s) 70
LmnI GCTCC 1 cut(s) 211
Lsp1109I GCAGC 5 cut(s) 55, 386, 975, 985, 1089
LweI GCATC 3 cut(s) 762, 950, 1345
MaeI CTAG 1 cut(s) 642
MaeII ACGT 3 cut(s) 55, 628, 796
MaeIII GTNAC 5 cut(s) 244, 624, 715, 1183, 1253
MalI GATC 2 cut(s) 35, 91
MboI GATC 2 cut(s) 33, 89
MfeI CAATTG 1 cut(s) 885
MhlI GDGCHC 2 cut(s) 216, 1103
MluCI AATT 6 cut(s) 18, 191, 515, 885, 1005, 1343
MlyI GAGTC 3 cut(s) 130, 404, 437
Mph1103I ATGCAT 1 cut(s) 1039
MseI TTAA 3 cut(s) 237, 792, 1417
MspI CCGG 2 cut(s) 130, 684
MspR9I CCNGG 1 cut(s) 656
MunI CAATTG 1 cut(s) 885
Mva1269I GAATGC 2 cut(s) 427, 1039
MvaI CCWGG 1 cut(s) 656
MwoI GCNNNNNNNGC 4 cut(s) 135, 295, 329, 431
NdeII GATC 2 cut(s) 33, 89
NlaIII CATG 3 cut(s) 910, 1133, 1313
NlaIV GGNNCC 1 cut(s) 635
NmeAIII GCCGAG 1 cut(s) 992
NmuCI GTSAC 2 cut(s) 1183, 1253
NsiI ATGCAT 1 cut(s) 1039
PciSI GCTCTTC 1 cut(s) 70
PcsI WCGNNNNNNNCGW 1 cut(s) 275
PctI GAATGC 2 cut(s) 427, 1039
PfeI GAWTC 5 cut(s) 326, 755, 898, 935, 1202
PfoI TCCNGGA 1 cut(s) 654
PinAI ACCGGT 1 cut(s) 683
PkrI GCNGC 6 cut(s) 45, 334, 376, 965, 1000, 1079
PleI GAGTC 3 cut(s) 129, 403, 436
PpsI GAGTC 3 cut(s) 129, 403, 436
Ppu21I YACGTR 1 cut(s) 629
PpuMI RGGWCCY 1 cut(s) 253
Psp124BI GAGCTC 1 cut(s) 216
Psp5II RGGWCCY 1 cut(s) 253
Psp6I CCWGG 1 cut(s) 654
PspGI CCWGG 1 cut(s) 654
PspN4I GGNNCC 1 cut(s) 635
PspPI GGNCC 1 cut(s) 253
PspPPI RGGWCCY 1 cut(s) 253
PstI CTGCAG 1 cut(s) 1003
PstNI CAGNNNCTG 2 cut(s) 938, 1181
RsaI GTAC 1 cut(s) 1307
RsaNI GTAC 1 cut(s) 1306
SacI GAGCTC 1 cut(s) 216
SapI GCTCTTC 1 cut(s) 70
SaqAI TTAA 3 cut(s) 237, 792, 1417
SatI GCNGC 6 cut(s) 44, 333, 375, 964, 999, 1078
Sau3AI GATC 2 cut(s) 33, 89
Sau96I GGNCC 1 cut(s) 253
SchI GAGTC 3 cut(s) 130, 404, 437
ScrFI CCNGG 1 cut(s) 656
SduI GDGCHC 2 cut(s) 216, 1103
SfaNI GCATC 3 cut(s) 762, 950, 1345
SfcI CTRYAG 1 cut(s) 999
SgrAI CRCCGGYG 1 cut(s) 683
SinI GGWCC 1 cut(s) 253
SmlI CTYRAG 2 cut(s) 215, 459
SmoI CTYRAG 2 cut(s) 215, 459
Sse9I AATT 6 cut(s) 18, 191, 515, 885, 1005, 1343
SsiI CCGC 3 cut(s) 332, 674, 804
SspI AATATT 1 cut(s) 163
SspMI CTAG 1 cut(s) 642
SstI GAGCTC 1 cut(s) 216
StyD4I CCNGG 1 cut(s) 654
TaaI ACNGT 5 cut(s) 205, 732, 1043, 1098, 1303
TaiI ACGT 3 cut(s) 58, 631, 799
TaqI TCGA 3 cut(s) 22, 155, 1143
TasI AATT 6 cut(s) 18, 191, 515, 885, 1005, 1343
TauI GCSGC 1 cut(s) 335
TfiI GAWTC 5 cut(s) 326, 755, 898, 935, 1202
Tru1I TTAA 3 cut(s) 237, 792, 1417
Tru9I TTAA 3 cut(s) 237, 792, 1417
TscAI CASTG 3 cut(s) 385, 880, 1048
TseFI GTSAC 2 cut(s) 1183, 1253
TseI GCWGC 5 cut(s) 43, 374, 963, 998, 1077
Tsp45I GTSAC 2 cut(s) 1183, 1253
TspDTI ATGAA 3 cut(s) 429, 923, 1326
TspGWI ACGGA 1 cut(s) 503
TspRI CASTG 3 cut(s) 385, 880, 1048
VneI GTGCAC 1 cut(s) 1099
VpaK11BI GGWCC 1 cut(s) 253
XapI RAATTY 2 cut(s) 191, 515
XbaI TCTAGA 1 cut(s) 641
XmiI GTMKAC 1 cut(s) 116
XspI CTAG 1 cut(s) 642
Zsp2I ATGCAT 1 cut(s) 1039
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.