Rh6CG318300

protein import into mitochondrial matrix

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0014249
Physical Location & Seq
Forward (+)
50306853 .. 50308083
1231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG318300.1

Sequence Viewer

Length: 450 bp
ATGACTCGTCCTTTTCAACTGAGTCACCCCGTTCTTCTTCTTCTTCTTCTTCTTCTAGCTACTACCGCAACAGCCAGGCCGGGCTTTCTCTTCACTCGGACCACCGGCCGGTGCACACCGGACTACTGGGGCAGCGGGGTGGAGTCGTGGCCGAGGATGGTCCCGCAGACATCGACGGTGTCCAAGGTGTTCGGGTCCAGAGCCTACGAACGGTACAGATCCGATCTGACGCTGCTGGAAGCGACGGCAAGGAGCGACGACGAGAACGTCTTCCCTAGGCTGCTGAAGCAGGCGAGCGCGGCGCTGCTCAACTCGTACTCCAGGAAGGGGTTCCCGTACACGGCGTGGGAGGTGAAGACTCGGGTCATACAGGGCTTGGTGTCCGAGAGGGTGGCGTCCCGTCAGGCCCAGCTATTCTCTCAGGCCAATGAGGCTTGTGATCTGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.76

Weight (kDa)

9.75

Isoelectric Point (pI)

34.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014249)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20515
fragaria_vesca FvH4_2g21450
malus_domestica MD05G1197000.v1.1
prunus_persica Prupe.8G223500_v2.0.a1
pyrus_communis pycom10g15900
rosa_chinensis RchiOBHm_Chr6g0288091
rosa_laevigata RLG00000012440
rosa_multiflora Rmu_co7961866.1_g000001 Rmu_sc0001117.1_g000002 Rmu_sc0010766.1_g000001
rosa_roxburghii Rroxscaffold_7G00180520
rosa_rugosa Rorug06G0194200
rosa_samantha Rh6AG304300 Rh6BG310300 Rh6CG318300 Rh6DG303200
rosa_wichuraiana Rw6G026330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 266
AccII CGCG 1 cut(s) 299
AciI CCGC 4 cut(s) 66, 135, 164, 299
AclWI GGATC 1 cut(s) 213
AcoI YGGCCR 2 cut(s) 106, 149
AcuI CTGAAG 1 cut(s) 305
AcyI GRCGYC 1 cut(s) 395
AdeI CACNNNGTG 1 cut(s) 345
AfaI GTAC 3 cut(s) 215, 317, 338
AfiI CCNNNNNNNGG 4 cut(s) 108, 210, 327, 340
AgsI TTSAA 1 cut(s) 17
AjnI CCWGG 2 cut(s) 74, 320
AluBI AGCT 2 cut(s) 59, 412
AluI AGCT 2 cut(s) 59, 412
Alw21I GWGCWC 1 cut(s) 116
Alw44I GTGCAC 1 cut(s) 112
AlwI GGATC 1 cut(s) 213
Ama87I CYCGRG 1 cut(s) 360
AoxI GGCC 5 cut(s) 77, 106, 149, 405, 423
ApaLI GTGCAC 1 cut(s) 112
ApeKI GCWGC 4 cut(s) 132, 232, 280, 304
Asp700I GAANNNNTTC 2 cut(s) 269, 329
AspA2I CCTAGG 1 cut(s) 275
AspLEI GCGC 2 cut(s) 299, 304
AspS9I GGNCC 4 cut(s) 99, 160, 195, 406
AsuC2I CCSGG 1 cut(s) 81
AsuHPI GGTGA 2 cut(s) 17, 364
AvaI CYCGRG 1 cut(s) 360
AvaII GGWCC 3 cut(s) 99, 160, 195
AvrII CCTAGG 1 cut(s) 275
BaeGI GKGCMC 1 cut(s) 116
BbsI GAAGAC 2 cut(s) 262, 362
Bbv12I GWGCWC 1 cut(s) 116
BbvI GCAGC 4 cut(s) 144, 219, 267, 291
BccI CCATC 1 cut(s) 151
BceAI ACGGC 2 cut(s) 261, 357
BciT130I CCWGG 2 cut(s) 76, 322
BcnI CCSGG 1 cut(s) 81
BfaI CTAG 3 cut(s) 56, 276, 448
BfoI RGCGCY 1 cut(s) 305
BglI GCCNNNNNGGC 1 cut(s) 431
BisI GCNGC 5 cut(s) 133, 233, 281, 300, 305
BlnI CCTAGG 1 cut(s) 275
BlsI GCNGC 5 cut(s) 134, 234, 282, 301, 306
Bme1390I CCNGG 3 cut(s) 76, 81, 322
Bme18I GGWCC 3 cut(s) 99, 160, 195
BmeT110I CYCGRG 1 cut(s) 360
BmgT120I GGNCC 4 cut(s) 99, 160, 195, 406
BmiI GGNNCC 3 cut(s) 162, 196, 332
BmrFI CCNGG 3 cut(s) 76, 81, 322
BmrI ACTGGG 1 cut(s) 136
BmuI ACTGGG 1 cut(s) 136
BoxI GACNNNNGTC 1 cut(s) 362
BpiI GAAGAC 2 cut(s) 262, 362
BpmI CTGGAG 1 cut(s) 304
BpuMI CCSGG 1 cut(s) 81
BsaHI GRCGYC 1 cut(s) 395
BsaJI CCNNGG 3 cut(s) 152, 183, 275
BsaWI WCCGGW 1 cut(s) 118
BsaXI ACNNNNNCTCC 2 cut(s) 302, 332
Bsc4I CCNNNNNNNGG 4 cut(s) 108, 210, 327, 340
Bse118I RCCGGY 2 cut(s) 104, 108
Bse1I ACTGG 1 cut(s) 131
BseBI CCWGG 2 cut(s) 76, 322
BseDI CCNNGG 3 cut(s) 152, 183, 275
BseGI GGATG 1 cut(s) 162
BseLI CCNNNNNNNGG 4 cut(s) 108, 210, 327, 340
BseMII CTCAG 2 cut(s) 11, 434
BseNI ACTGG 1 cut(s) 131
BseSI GKGCMC 1 cut(s) 116
BseX3I CGGCCG 1 cut(s) 106
BseXI GCAGC 4 cut(s) 144, 219, 267, 291
BseYI CCCAGC 1 cut(s) 408
BsgI GTGCAG 1 cut(s) 428
Bsh1236I CGCG 1 cut(s) 299
Bsh1285I CGRYCG 1 cut(s) 109
BshFI GGCC 5 cut(s) 79, 108, 151, 407, 425
BsiEI CGRYCG 1 cut(s) 109
BsiHKAI GWGCWC 1 cut(s) 116
BsiHKCI CYCGRG 1 cut(s) 360
BsiSI CCGG 4 cut(s) 80, 105, 109, 119
BslFI GGGAC 2 cut(s) 146, 382
BslI CCNNNNNNNGG 4 cut(s) 108, 210, 327, 340
BsmFI GGGAC 2 cut(s) 146, 382
BsnI GGCC 5 cut(s) 79, 108, 151, 407, 425
BsoBI CYCGRG 1 cut(s) 360
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 3 cut(s) 218, 223, 439
BspACI CCGC 4 cut(s) 66, 135, 164, 299
BspANI GGCC 5 cut(s) 79, 108, 151, 407, 425
BspCNI CTCAG 2 cut(s) 12, 433
BspFNI CGCG 1 cut(s) 299
BspLI GGNNCC 3 cut(s) 162, 196, 332
BspPI GGATC 1 cut(s) 213
BsrFI RCCGGY 2 cut(s) 104, 108
BsrI ACTGG 1 cut(s) 131
BssAI RCCGGY 2 cut(s) 104, 108
BssECI CCNNGG 3 cut(s) 152, 183, 275
BssMI GATC 3 cut(s) 218, 223, 439
BssNI GRCGYC 1 cut(s) 395
BssT1I CCWWGG 2 cut(s) 183, 275
Bst2UI CCWGG 2 cut(s) 76, 322
Bst4CI ACNGT 2 cut(s) 178, 213
Bst6I CTCTTC 1 cut(s) 95
BstACI GRCGYC 1 cut(s) 395
BstC8I GCNNGC 2 cut(s) 291, 295
BstDEI CTNAG 2 cut(s) 20, 420
BstF5I GGATG 1 cut(s) 162
BstFNI CGCG 1 cut(s) 299
BstH2I RGCGCY 1 cut(s) 305
BstHHI GCGC 2 cut(s) 299, 304
BstKTI GATC 3 cut(s) 221, 226, 442
BstMBI GATC 3 cut(s) 218, 223, 439
BstMCI CGRYCG 1 cut(s) 109
BstMWI GCNNNNNNNGC 4 cut(s) 65, 286, 299, 431
BstNI CCWGG 2 cut(s) 76, 322
BstPAI GACNNNNGTC 1 cut(s) 362
BstSCI CCNGG 3 cut(s) 74, 79, 320
BstSLI GKGCMC 1 cut(s) 116
BstUI CGCG 1 cut(s) 299
BstV1I GCAGC 4 cut(s) 144, 219, 267, 291
BstV2I GAAGAC 2 cut(s) 262, 362
BstX2I RGATCY 1 cut(s) 218
BstYI RGATCY 1 cut(s) 218
BstZI CGGCCG 1 cut(s) 106
BsuRI GGCC 5 cut(s) 79, 108, 151, 407, 425
BtsCI GGATG 1 cut(s) 162
Cac8I GCNNGC 2 cut(s) 291, 295
CfoI GCGC 2 cut(s) 299, 304
Cfr10I RCCGGY 2 cut(s) 104, 108
Cfr13I GGNCC 4 cut(s) 99, 160, 195, 406
CseI GACGC 2 cut(s) 238, 384
Csp6I GTAC 3 cut(s) 214, 316, 337
CviQI GTAC 3 cut(s) 214, 316, 337
DdeI CTNAG 2 cut(s) 20, 420
DpnI GATC 3 cut(s) 220, 225, 441
DpnII GATC 3 cut(s) 218, 223, 439
DraIII CACNNNGTG 1 cut(s) 345
DrdI GACNNNNNNGTC 1 cut(s) 266
DseDI GACNNNNNNGTC 1 cut(s) 266
EaeI YGGCCR 2 cut(s) 106, 149
EagI CGGCCG 1 cut(s) 106
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
EclXI CGGCCG 1 cut(s) 106
Eco130I CCWWGG 2 cut(s) 183, 275
Eco47I GGWCC 3 cut(s) 99, 160, 195
Eco52I CGGCCG 1 cut(s) 106
Eco57I CTGAAG 1 cut(s) 305
Eco88I CYCGRG 1 cut(s) 360
EcoRII CCWGG 2 cut(s) 74, 320
EcoT14I CCWWGG 2 cut(s) 183, 275
ErhI CCWWGG 2 cut(s) 183, 275
FaiI YATR 1 cut(s) 368
FaqI GGGAC 2 cut(s) 146, 382
FauI CCCGC 2 cut(s) 128, 171
Fnu4HI GCNGC 5 cut(s) 133, 233, 281, 300, 305
FokI GGATG 1 cut(s) 169
Fsp4HI GCNGC 5 cut(s) 133, 233, 281, 300, 305
FspBI CTAG 3 cut(s) 56, 276, 448
GlaI GCGC 2 cut(s) 298, 303
GluI GCNGC 5 cut(s) 133, 233, 281, 300, 305
GsaI CCCAGC 1 cut(s) 412
GsuI CTGGAG 1 cut(s) 304
HaeII RGCGCY 1 cut(s) 305
HaeIII GGCC 5 cut(s) 79, 108, 151, 407, 425
HapII CCGG 4 cut(s) 80, 105, 109, 119
HgaI GACGC 2 cut(s) 238, 384
HhaI GCGC 2 cut(s) 299, 304
Hin1I GRCGYC 1 cut(s) 395
Hin6I GCGC 2 cut(s) 297, 302
HinP1I GCGC 2 cut(s) 297, 302
HinfI GANTC 4 cut(s) 4, 22, 143, 358
HpaII CCGG 4 cut(s) 80, 105, 109, 119
HphI GGTGA 2 cut(s) 17, 364
Hpy166II GTNNAC 2 cut(s) 114, 339
Hpy188I TCNGA 4 cut(s) 99, 223, 228, 385
Hpy188III TCNNGA 1 cut(s) 198
Hpy8I GTNNAC 2 cut(s) 114, 339
Hpy99I CGWCG 4 cut(s) 178, 247, 260, 263
HpyAV CCTTC 1 cut(s) 319
HpyCH4III ACNGT 2 cut(s) 178, 213
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 2 cut(s) 114, 445
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 286, 299, 431
HpyF3I CTNAG 2 cut(s) 20, 420
HpySE526I ACGT 1 cut(s) 267
Hsp92I GRCGYC 1 cut(s) 395
HspAI GCGC 2 cut(s) 297, 302
Kzo9I GATC 3 cut(s) 218, 223, 439
LmnI GCTCC 1 cut(s) 252
Lsp1109I GCAGC 4 cut(s) 144, 219, 267, 291
MaeI CTAG 3 cut(s) 56, 276, 448
MaeII ACGT 1 cut(s) 267
MaeIII GTNAC 1 cut(s) 23
MalI GATC 3 cut(s) 220, 225, 441
MboI GATC 3 cut(s) 218, 223, 439
MflI RGATCY 1 cut(s) 218
MhlI GDGCHC 1 cut(s) 116
MlyI GAGTC 3 cut(s) 31, 152, 352
MnlI CCTC 4 cut(s) 147, 343, 381, 424
MroXI GAANNNNTTC 2 cut(s) 269, 329
MspA1I CMGCKG 1 cut(s) 135
MspI CCGG 4 cut(s) 80, 105, 109, 119
MspR9I CCNGG 3 cut(s) 76, 81, 322
MteI GCGCNGCGC 1 cut(s) 300
MvaI CCWGG 2 cut(s) 76, 322
MvnI CGCG 1 cut(s) 299
MwoI GCNNNNNNNGC 4 cut(s) 65, 286, 299, 431
NciI CCSGG 1 cut(s) 81
NdeII GATC 3 cut(s) 218, 223, 439
NlaIV GGNNCC 3 cut(s) 162, 196, 332
NmeAIII GCCGAG 1 cut(s) 177
NmuCI GTSAC 1 cut(s) 23
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PdmI GAANNNNTTC 2 cut(s) 269, 329
PflFI GACNNNGTC 1 cut(s) 178
PfoI TCCNGGA 1 cut(s) 320
PkrI GCNGC 5 cut(s) 134, 234, 282, 301, 306
PleI GAGTC 3 cut(s) 30, 151, 352
PpsI GAGTC 3 cut(s) 30, 151, 352
PshAI GACNNNNGTC 1 cut(s) 362
Psp6I CCWGG 2 cut(s) 74, 320
PspFI CCCAGC 1 cut(s) 408
PspGI CCWGG 2 cut(s) 74, 320
PspN4I GGNNCC 3 cut(s) 162, 196, 332
PspPI GGNCC 4 cut(s) 99, 160, 195, 406
PsuI RGATCY 1 cut(s) 218
PsyI GACNNNGTC 1 cut(s) 178
RsaI GTAC 3 cut(s) 215, 317, 338
RsaNI GTAC 3 cut(s) 214, 316, 337
SatI GCNGC 5 cut(s) 133, 233, 281, 300, 305
Sau3AI GATC 3 cut(s) 218, 223, 439
Sau96I GGNCC 4 cut(s) 99, 160, 195, 406
SchI GAGTC 3 cut(s) 31, 152, 352
ScrFI CCNGG 3 cut(s) 76, 81, 322
SduI GDGCHC 1 cut(s) 116
SetI ASST 5 cut(s) 61, 189, 270, 354, 414
SinI GGWCC 3 cut(s) 99, 160, 195
SsiI CCGC 4 cut(s) 66, 135, 164, 299
SspMI CTAG 3 cut(s) 56, 276, 448
StyD4I CCNGG 3 cut(s) 74, 79, 320
StyI CCWWGG 2 cut(s) 183, 275
TaaI ACNGT 2 cut(s) 178, 213
TaiI ACGT 1 cut(s) 270
TaqI TCGA 1 cut(s) 173
TauI GCSGC 1 cut(s) 302
TseFI GTSAC 1 cut(s) 23
TseI GCWGC 4 cut(s) 132, 232, 280, 304
Tsp45I GTSAC 1 cut(s) 23
Tth111I GACNNNGTC 1 cut(s) 178
VneI GTGCAC 1 cut(s) 112
VpaK11BI GGWCC 3 cut(s) 99, 160, 195
XmaJI CCTAGG 1 cut(s) 275
XmnI GAANNNNTTC 2 cut(s) 269, 329
XspI CTAG 3 cut(s) 56, 276, 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.