pycom10g18530

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0010003
Physical Location & Seq
Reverse (-)
21795778 .. 21797562
1785 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1785 bp
ATGCATAAAACCTGCCAAAGGATAAAAAGTAAGAAACATCTTGCCCAATCTAAACAGCTAAACTTTCATCATGCTTTGATGAAAGAATTCTATCAGTCAGCATATAAACATATGCAGTTCTGCACAGCATATATTGAAGGGCTTTGCACCAATCACAGGCCGGATTTAGGGTACCAAGTGCTCCAATCATGCAATGGGGAAAATGTCCTTATCGATGTGTATGCTTATAACGCTGTCATTCGTGGGTTCTGCAATGAGGTGAAGTTTGATGAAGCTGAAAGCGTCTTTCTTGACATGGAAAAGCGAGGGCTGGTCCCTGATTCATATACCTACAGTGCAATGATCTGTGGCTACTGCAAGAGTTCCAAGTTGTTAAAAGCTTTGGCTCTCCATAATGACATGGAGTCAAAGGGTATAAAAACAAATTGTGTGATTGTTAGTTTGATTCTTCAGTGTATGTGTAAGATGGGCATGCCTTCTGAAGCGGTGGATCAGTTTAGAGAATATAAGAGCTTAGGTATCTATCTTGATGAGGTTTCGTACAATATCGCAGTGGATGCTTCGTGCAAGCTGGGGAAAATGGACCAAGCCTTAGAATTTCTTGAAGAGATGAAGTGTAAGCATATGGTTTTAGATATTATGCATTACACAACATTGATCAAAGGCTACTGTCTCCAAGGGAATGTTGCTGAGGCCGTAAGCCTGTTGAAGGAAATGAAGGAAAAGGGTCTGAAGCCAGACATCACTACTTACAATGTACTTGCTGCTGGGTTTTGTAGAAATGGCCTGGGAGCCGAGGCGCTTGACCTTTTGGATTATATGGAGGCACATGGTTTTAAACCAGACTCTGTTACACACAACATGATAATTGAAAATTTATGCATCGGAGGGAAAGTCAAAGAAGCTGAAGGTTTTCTAAACAGTTTGGAATATAAGAATGTAGATACCTATTCTGCCATGGTCAGCGGGTACTGTGAAGCCAACCATACAAAAGAGGCCTATGAACTTCTTATTAGGTTGGCAAAGCAAGGAACTTTAGTTAAACAAGGCGTTTGCTTTAAAGTATTCAGTAAACTTTGTATAGAAAATGATAATGACAGAGCTATTTTGTTGCTTAAGGCAATGTTGGCGTTAAATGTGGATCCTAAAAGAATTATGTACAACAAAGCCATTGCTTCTCTCTGCCAGGCTGGAGAGGTGAAAAAGGCCCGTTGGGTTTTTGATTCTTTGGTTGAGAGAGGGTTAACTCCTGATGTGATTACCTACACAATGATGATGAATAGCTACTGCAAGGTGGATTGTTTGCAAGAAGCCCATGATCTCTTCCATGATATGAAAAAGAGAGGGATTCAACCTGATATCATCACTTACACAGTTTTGCTCGATGGTTTTCCCAAAAGAAATTTAAGAAGGGTTAATTCCTCTCGAGATGCAAGTGGAGATAAGGAAGAAACTTTTGATGCTTGTACTGTTTGGAGTGAGATGAAGGAAATGGAAATAAGACCCGATGTAATTTGTTATACTGTTTTGATAGACAGGCAATGTAAAACCGACAACTTTCAGGATGCTATTGCGCTTTTTGATGAAATGATGAACAGAGGATTAGAGCCTGATACAGTGACATACACAGCACTTCTGGCTGGCTGTTGTAGGAGGGGAGATGTGGATAGGGCTGTAACACTCGCTAATGAGATGTCCTCTAAGGGAATGCTGCCAAATGCCCGGATACTTGCGATTCTACAACATGGAATCCTAAAAGCCACGAAAGTGCAGTTTCGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

595

Amino Acids

67.19

Weight (kDa)

6.92

Isoelectric Point (pI)

34.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_24 PF23276 51 - 168 1.3e-06 Fungal tetratrico peptide repeats
PPR_long PF17177 55 - 158 3.8e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 60 - 116 5.8e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 72 - 120 2.6e-17 PPR repeat family
PPR PF01535 75 - 104 1.9e-06 PPR repeat
PPR_1 PF12854 102 - 135 9.8e-09 PPR repeat
PPR PF01535 109 - 139 2e-07 PPR repeat
PPR_1 PF12854 173 - 205 9.2e-08 PPR repeat
PPR_long PF17177 192 - 283 8.8e-06 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 209 - 240 6.5e-10 PPR repeat
PPR_3 PF13812 211 - 254 1.6e-10 Pentatricopeptide repeat domain
PPR_2 PF13041 212 - 260 3.9e-16 PPR repeat family
PPR PF01535 215 - 244 1.6e-08 PPR repeat
PPR_1 PF12854 242 - 275 1.4e-08 PPR repeat
PPR_2 PF13041 257 - 294 2.3e-08 PPR repeat family
PPR_1 PF12854 278 - 307 2e-06 PPR repeat
PPR_1 PF12854 313 - 337 1e-05 PPR repeat
PPR_2 PF13041 385 - 431 1.3e-11 PPR repeat family
PPR_1 PF12854 413 - 446 4.5e-08 PPR repeat
PPR_2 PF13041 417 - 464 3.1e-19 PPR repeat family
PPR PF01535 420 - 450 2.7e-08 PPR repeat
PPR_long PF17177 422 - 577 1.5e-08 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 499 - 530 3.6e-06 PPR repeat
PPR_2 PF13041 502 - 551 8.2e-17 PPR repeat family
PPR_3 PF13812 526 - 573 7e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 533 - 566 3.6e-11 PPR repeat
PPR_2 PF13041 537 - 574 3.7e-10 PPR repeat family
PPR PF01535 540 - 569 4.7e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010003)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13800 AT1G13800 AT2G26790 AT2G26790
fragaria_vesca FvH4_3g13690
malus_domestica MD05G1241200.v1.1 MD10G1219600.v1.1
prunus_persica Prupe.4G124300_v2.0.a1
pyrus_communis pycom10g18530 pycom10g18570
rosa_chinensis RchiOBHm_Chr5g0022931
rosa_laevigata RLG00000032683
rosa_multiflora Rmu_sc0000401.1_g000029
rosa_roxburghii Rroxscaffold_1G00056410
rosa_rugosa Rorug05G0075600 Rorug05G0075700
rosa_samantha Rh5AG162100 Rh5BG161300 Rh5CG175900 Rh5DG162600
rosa_wichuraiana Rw5G014590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 228
Acc36I ACCTGC 1 cut(s) 20
Acc65I GGTACC 1 cut(s) 171
AccB1I GGYRCC 1 cut(s) 171
AciI CCGC 2 cut(s) 485, 966
AclWI GGATC 3 cut(s) 498, 1136, 1149
AcsI RAATTY 4 cut(s) 86, 596, 874, 1402
AcuI CTGAAG 4 cut(s) 434, 501, 752, 927
AfaI GTAC 6 cut(s) 173, 542, 759, 971, 1160, 1468
AfiI CCNNNNNNNGG 4 cut(s) 18, 156, 167, 709
AflII CTTAAG 1 cut(s) 1115
AgsI TTSAA 5 cut(s) 137, 605, 709, 872, 1352
AhdI GACNNNNNGTC 1 cut(s) 403
AjnI CCWGG 2 cut(s) 786, 1185
AleI CACNNNNGTG 1 cut(s) 1766
AluBI AGCT 8 cut(s) 58, 275, 380, 513, 571, 905, 1103, 1284
AluI AGCT 8 cut(s) 58, 275, 380, 513, 571, 905, 1103, 1284
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 1 cut(s) 677
AlwI GGATC 3 cut(s) 498, 1136, 1149
AlwNI CAGNNNCTG 1 cut(s) 848
Ama87I CYCGRG 1 cut(s) 1425
AoxI GGCC 5 cut(s) 158, 693, 784, 996, 1206
ApeKI GCWGC 2 cut(s) 764, 1711
ApoI RAATTY 4 cut(s) 86, 596, 874, 1402
Asp700I GAANNNNTTC 2 cut(s) 86, 912
Asp718I GGTACC 1 cut(s) 171
AspLEI GCGC 2 cut(s) 802, 1576
AspS9I GGNCC 3 cut(s) 313, 583, 1207
AsuC2I CCSGG 1 cut(s) 1723
AsuHPI GGTGA 2 cut(s) 271, 1210
AvaI CYCGRG 1 cut(s) 1425
AvaII GGWCC 2 cut(s) 313, 583
BamHI GGATCC 1 cut(s) 1141
BanI GGYRCC 1 cut(s) 171
Bbv12I GWGCWC 1 cut(s) 183
BbvCI CCTCAGC 1 cut(s) 690
BbvI GCAGC 2 cut(s) 751, 1698
BccI CCATC 2 cut(s) 460, 1379
BceAI ACGGC 1 cut(s) 680
BcgI CGANNNNNNTGC 2 cut(s) 203, 237
BciT130I CCWGG 2 cut(s) 788, 1187
BciVI GTATCC 1 cut(s) 1719
BclI TGATCA 1 cut(s) 657
BcnI CCSGG 1 cut(s) 1723
BcoDI GTCTC 1 cut(s) 677
BfmI CTRYAG 1 cut(s) 331
BfoI RGCGCY 1 cut(s) 803
BfrI CTTAAG 1 cut(s) 1115
BfuAI ACCTGC 1 cut(s) 20
BfuI GTATCC 1 cut(s) 1719
BisI GCNGC 2 cut(s) 765, 1712
BlsI GCNGC 2 cut(s) 766, 1713
Bme1390I CCNGG 3 cut(s) 788, 1187, 1723
Bme18I GGWCC 2 cut(s) 313, 583
BmeRI GACNNNNNGTC 1 cut(s) 403
BmeT110I CYCGRG 1 cut(s) 1425
BmgT120I GGNCC 3 cut(s) 313, 583, 1207
BmiI GGNNCC 4 cut(s) 173, 315, 793, 1143
BmrFI CCNGG 3 cut(s) 788, 1187, 1723
BmsI GCATC 5 cut(s) 547, 891, 1420, 1450, 1555
BplI GAGNNNNNCTC 2 cut(s) 1682, 1714
BpmI CTGGAG 1 cut(s) 1212
Bpu10I CCTNAGC 2 cut(s) 514, 690
BpuMI CCSGG 1 cut(s) 1723
Bsa29I ATCGAT 1 cut(s) 213
BsaJI CCNNGG 4 cut(s) 676, 787, 795, 957
BsaXI ACNNNNNCTCC 2 cut(s) 879, 909
Bsc4I CCNNNNNNNGG 4 cut(s) 18, 156, 167, 709
Bse3DI GCAATG 6 cut(s) 199, 259, 345, 1128, 1170, 1547
BseBI CCWGG 2 cut(s) 788, 1187
BseCI ATCGAT 1 cut(s) 213
BseDI CCNNGG 4 cut(s) 676, 787, 795, 957
BseGI GGATG 2 cut(s) 562, 1570
BseLI CCNNNNNNNGG 4 cut(s) 18, 156, 167, 709
BseMI GCAATG 6 cut(s) 199, 259, 345, 1128, 1170, 1547
BseMII CTCAG 1 cut(s) 681
BseXI GCAGC 2 cut(s) 751, 1698
BseYI CCCAGC 2 cut(s) 571, 767
BsgI GTGCAG 1 cut(s) 106
BshFI GGCC 5 cut(s) 160, 695, 786, 998, 1208
BshNI GGYRCC 1 cut(s) 171
BshVI ATCGAT 1 cut(s) 213
BsiHKAI GWGCWC 1 cut(s) 183
BsiHKCI CYCGRG 1 cut(s) 1425
BsiSI CCGG 2 cut(s) 161, 1723
BslFI GGGAC 1 cut(s) 299
BslI CCNNNNNNNGG 4 cut(s) 18, 156, 167, 709
BsmAI GTCTC 1 cut(s) 677
BsmFI GGGAC 1 cut(s) 299
BsmI GAATGC 1 cut(s) 1713
BsnI GGCC 5 cut(s) 160, 695, 786, 998, 1208
BsoBI CYCGRG 1 cut(s) 1425
Bsp1286I GDGCHC 1 cut(s) 183
Bsp1407I TGTACA 1 cut(s) 1158
Bsp143I GATC 5 cut(s) 342, 490, 657, 1141, 1318
Bsp19I CCATGG 1 cut(s) 957
BspACI CCGC 2 cut(s) 485, 966
BspANI GGCC 5 cut(s) 160, 695, 786, 998, 1208
BspCNI CTCAG 1 cut(s) 682
BspDI ATCGAT 1 cut(s) 213
BspLI GGNNCC 4 cut(s) 173, 315, 793, 1143
BspMI ACCTGC 1 cut(s) 20
BspPI GGATC 3 cut(s) 498, 1136, 1149
BspT107I GGYRCC 1 cut(s) 171
BspTI CTTAAG 1 cut(s) 1115
BsrDI GCAATG 6 cut(s) 199, 259, 345, 1128, 1170, 1547
BsrGI TGTACA 1 cut(s) 1158
BssECI CCNNGG 4 cut(s) 676, 787, 795, 957
BssMI GATC 5 cut(s) 342, 490, 657, 1141, 1318
BssT1I CCWWGG 2 cut(s) 676, 957
Bst2UI CCWGG 2 cut(s) 788, 1187
Bst4CI ACNGT 8 cut(s) 335, 671, 923, 974, 1375, 1471, 1525, 1618
Bst6I CTCTTC 2 cut(s) 600, 1328
BstAFI CTTAAG 1 cut(s) 1115
BstAPI GCANNNNNTGC 1 cut(s) 557
BstAUI TGTACA 1 cut(s) 1158
BstC8I GCNNGC 3 cut(s) 473, 569, 1642
BstDEI CTNAG 4 cut(s) 514, 592, 690, 1701
BstDSI CCRYGG 1 cut(s) 957
BstENI CCTNNNNNAGG 2 cut(s) 16, 707
BstF5I GGATG 2 cut(s) 562, 1570
BstH2I RGCGCY 1 cut(s) 803
BstHHI GCGC 2 cut(s) 802, 1576
BstKTI GATC 5 cut(s) 345, 493, 660, 1144, 1321
BstMAI GTCTC 1 cut(s) 677
BstMBI GATC 5 cut(s) 342, 490, 657, 1141, 1318
BstMWI GCNNNNNNNGC 4 cut(s) 230, 557, 1127, 1637
BstNI CCWGG 2 cut(s) 788, 1187
BstNSI RCATGY 1 cut(s) 475
BstSCI CCNGG 3 cut(s) 786, 1185, 1721
BstSFI CTRYAG 1 cut(s) 331
BstV1I GCAGC 2 cut(s) 751, 1698
BstX2I RGATCY 1 cut(s) 1141
BstYI RGATCY 1 cut(s) 1141
Bsu15I ATCGAT 1 cut(s) 213
BsuI GTATCC 1 cut(s) 1719
BsuRI GGCC 5 cut(s) 160, 695, 786, 998, 1208
BsuTUI ATCGAT 1 cut(s) 213
BtgI CCRYGG 1 cut(s) 957
BtsCI GGATG 2 cut(s) 562, 1570
BtsI GCAGTG 1 cut(s) 558
BtsIMutI CAGTG 4 cut(s) 340, 458, 558, 1623
BveI ACCTGC 1 cut(s) 20
Cac8I GCNNGC 3 cut(s) 473, 569, 1642
CaiI CAGNNNCTG 1 cut(s) 848
CfoI GCGC 2 cut(s) 802, 1576
Cfr13I GGNCC 3 cut(s) 313, 583, 1207
ClaI ATCGAT 1 cut(s) 213
CseI GACGC 1 cut(s) 271
Csp6I GTAC 6 cut(s) 172, 541, 758, 970, 1159, 1467
CviQI GTAC 6 cut(s) 172, 541, 758, 970, 1159, 1467
DdeI CTNAG 4 cut(s) 514, 592, 690, 1701
DpnI GATC 5 cut(s) 344, 492, 659, 1143, 1320
DpnII GATC 5 cut(s) 342, 490, 657, 1141, 1318
DraI TTTAAA 2 cut(s) 838, 1060
DriI GACNNNNNGTC 1 cut(s) 403
Eam1104I CTCTTC 2 cut(s) 600, 1328
Eam1105I GACNNNNNGTC 1 cut(s) 403
EarI CTCTTC 2 cut(s) 600, 1328
Eco130I CCWWGG 2 cut(s) 676, 957
Eco147I AGGCCT 1 cut(s) 998
Eco32I GATATC 1 cut(s) 1360
Eco47I GGWCC 2 cut(s) 313, 583
Eco57I CTGAAG 4 cut(s) 434, 501, 752, 927
Eco88I CYCGRG 1 cut(s) 1425
EcoNI CCTNNNNNAGG 2 cut(s) 16, 707
EcoRI GAATTC 1 cut(s) 86
EcoRII CCWGG 2 cut(s) 786, 1185
EcoRV GATATC 1 cut(s) 1360
EcoT14I CCWWGG 2 cut(s) 676, 957
EcoT22I ATGCAT 3 cut(s) 6, 645, 884
ErhI CCWWGG 2 cut(s) 676, 957
FaqI GGGAC 1 cut(s) 299
FauI CCCGC 1 cut(s) 959
FauNDI CATATG 2 cut(s) 111, 624
FbaI TGATCA 1 cut(s) 657
Fnu4HI GCNGC 2 cut(s) 765, 1712
FokI GGATG 2 cut(s) 569, 1577
Fsp4HI GCNGC 2 cut(s) 765, 1712
GlaI GCGC 2 cut(s) 801, 1575
GluI GCNGC 2 cut(s) 765, 1712
GsaI CCCAGC 2 cut(s) 575, 771
GsuI CTGGAG 1 cut(s) 1212
HaeII RGCGCY 1 cut(s) 803
HaeIII GGCC 5 cut(s) 160, 695, 786, 998, 1208
HapII CCGG 2 cut(s) 161, 1723
HgaI GACGC 1 cut(s) 271
HhaI GCGC 2 cut(s) 802, 1576
Hin6I GCGC 2 cut(s) 800, 1574
HinP1I GCGC 2 cut(s) 800, 1574
HincII GTYRAC 1 cut(s) 1245
HindII GTYRAC 1 cut(s) 1245
HindIII AAGCTT 1 cut(s) 378
HinfI GANTC 8 cut(s) 320, 404, 445, 845, 1223, 1348, 1735, 1749
HpaI GTTAAC 1 cut(s) 1245
HpaII CCGG 2 cut(s) 161, 1723
HphI GGTGA 2 cut(s) 271, 1210
Hpy166II GTNNAC 2 cut(s) 1073, 1245
Hpy188I TCNGA 4 cut(s) 481, 732, 887, 1779
Hpy188III TCNNGA 7 cut(s) 290, 527, 602, 1250, 1425, 1427, 1562
Hpy8I GTNNAC 2 cut(s) 1073, 1245
HpyAV CCTTC 7 cut(s) 131, 486, 703, 712, 902, 1404, 1480
HpyCH4III ACNGT 8 cut(s) 335, 671, 923, 974, 1375, 1471, 1525, 1618
HpyF10VI GCNNNNNNNGC 4 cut(s) 230, 557, 1127, 1637
HpyF3I CTNAG 4 cut(s) 514, 592, 690, 1701
HspAI GCGC 2 cut(s) 800, 1574
KpnI GGTACC 1 cut(s) 175
Ksp22I TGATCA 1 cut(s) 657
KspAI GTTAAC 1 cut(s) 1245
Kzo9I GATC 5 cut(s) 342, 490, 657, 1141, 1318
LmnI GCTCC 2 cut(s) 186, 791
Lsp1109I GCAGC 2 cut(s) 751, 1698
LweI GCATC 5 cut(s) 547, 891, 1420, 1450, 1555
MaeIII GTNAC 3 cut(s) 850, 1618, 1675
MalI GATC 5 cut(s) 344, 492, 659, 1143, 1320
MboI GATC 5 cut(s) 342, 490, 657, 1141, 1318
MboII GAAGA 4 cut(s) 440, 617, 1315, 1460
MflI RGATCY 1 cut(s) 1141
MhlI GDGCHC 1 cut(s) 183
MluCI AATT 9 cut(s) 86, 424, 596, 867, 874, 1152, 1402, 1417, 1512
MlyI GAGTC 2 cut(s) 413, 839
Mph1103I ATGCAT 3 cut(s) 6, 645, 884
MroXI GAANNNNTTC 2 cut(s) 86, 912
MseI TTAA 9 cut(s) 374, 837, 1041, 1059, 1116, 1133, 1244, 1406, 1416
MslI CAYNNNNRTG 2 cut(s) 1271, 1766
MspA1I CMGCKG 1 cut(s) 966
MspCI CTTAAG 1 cut(s) 1115
MspI CCGG 2 cut(s) 161, 1723
MspR9I CCNGG 3 cut(s) 788, 1187, 1723
Mva1269I GAATGC 1 cut(s) 1713
MvaI CCWGG 2 cut(s) 788, 1187
MwoI GCNNNNNNNGC 4 cut(s) 230, 557, 1127, 1637
NciI CCSGG 1 cut(s) 1723
NcoI CCATGG 1 cut(s) 957
NdeI CATATG 2 cut(s) 111, 624
NdeII GATC 5 cut(s) 342, 490, 657, 1141, 1318
NlaIV GGNNCC 4 cut(s) 173, 315, 793, 1143
NmeAIII GCCGAG 1 cut(s) 820
NmuCI GTSAC 1 cut(s) 1618
NsiI ATGCAT 3 cut(s) 6, 645, 884
NspI RCATGY 1 cut(s) 475
OliI CACNNNNGTG 1 cut(s) 1766
PaeI GCATGC 1 cut(s) 475
PaeR7I CTCGAG 1 cut(s) 1425
PceI AGGCCT 1 cut(s) 998
PctI GAATGC 1 cut(s) 1713
PdmI GAANNNNTTC 2 cut(s) 86, 912
PfeI GAWTC 6 cut(s) 320, 445, 1223, 1348, 1735, 1749
PkrI GCNGC 2 cut(s) 766, 1713
PleI GAGTC 2 cut(s) 412, 839
PpsI GAGTC 2 cut(s) 412, 839
PsiI TTATAA 1 cut(s) 228
Psp6I CCWGG 2 cut(s) 786, 1185
PspFI CCCAGC 2 cut(s) 571, 767
PspGI CCWGG 2 cut(s) 786, 1185
PspN4I GGNNCC 4 cut(s) 173, 315, 793, 1143
PspPI GGNCC 3 cut(s) 313, 583, 1207
PstNI CAGNNNCTG 1 cut(s) 848
PsuI RGATCY 1 cut(s) 1141
RsaI GTAC 6 cut(s) 173, 542, 759, 971, 1160, 1468
RsaNI GTAC 6 cut(s) 172, 541, 758, 970, 1159, 1467
RseI CAYNNNNRTG 2 cut(s) 1271, 1766
SaqAI TTAA 9 cut(s) 374, 837, 1041, 1059, 1116, 1133, 1244, 1406, 1416
SatI GCNGC 2 cut(s) 765, 1712
Sau3AI GATC 5 cut(s) 342, 490, 657, 1141, 1318
Sau96I GGNCC 3 cut(s) 313, 583, 1207
SchI GAGTC 2 cut(s) 413, 839
ScrFI CCNGG 3 cut(s) 788, 1187, 1723
SduI GDGCHC 1 cut(s) 183
SfaNI GCATC 5 cut(s) 547, 891, 1420, 1450, 1555
SfcI CTRYAG 1 cut(s) 331
Sfr274I CTCGAG 1 cut(s) 1425
SinI GGWCC 2 cut(s) 313, 583
SlaI CTCGAG 1 cut(s) 1425
SmiMI CAYNNNNRTG 2 cut(s) 1271, 1766
SmlI CTYRAG 2 cut(s) 1115, 1425
SmoI CTYRAG 2 cut(s) 1115, 1425
SphI GCATGC 1 cut(s) 475
Sse9I AATT 9 cut(s) 86, 424, 596, 867, 874, 1152, 1402, 1417, 1512
SseBI AGGCCT 1 cut(s) 998
SsiI CCGC 2 cut(s) 485, 966
StuI AGGCCT 1 cut(s) 998
StyD4I CCNGG 3 cut(s) 786, 1185, 1721
StyI CCWWGG 2 cut(s) 676, 957
TaaI ACNGT 8 cut(s) 335, 671, 923, 974, 1375, 1471, 1525, 1618
TaqI TCGA 3 cut(s) 213, 1383, 1426
TasI AATT 9 cut(s) 86, 424, 596, 867, 874, 1152, 1402, 1417, 1512
TatI WGTACW 3 cut(s) 757, 1158, 1466
TfiI GAWTC 6 cut(s) 320, 445, 1223, 1348, 1735, 1749
Tru1I TTAA 9 cut(s) 374, 837, 1041, 1059, 1116, 1133, 1244, 1406, 1416
Tru9I TTAA 9 cut(s) 374, 837, 1041, 1059, 1116, 1133, 1244, 1406, 1416
TscAI CASTG 4 cut(s) 340, 458, 558, 1623
TseFI GTSAC 1 cut(s) 1618
TseI GCWGC 2 cut(s) 764, 1711
Tsp45I GTSAC 1 cut(s) 1618
TspRI CASTG 4 cut(s) 340, 458, 558, 1623
Vha464I CTTAAG 1 cut(s) 1115
VpaK11BI GGWCC 2 cut(s) 313, 583
XagI CCTNNNNNAGG 2 cut(s) 16, 707
XapI RAATTY 4 cut(s) 86, 596, 874, 1402
XceI RCATGY 1 cut(s) 475
XcmI CCANNNNNNNNNTGG 1 cut(s) 191
XhoI CTCGAG 1 cut(s) 1425
XmnI GAANNNNTTC 2 cut(s) 86, 912
Zsp2I ATGCAT 3 cut(s) 6, 645, 884
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.