pycom10g18570

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0010003
Physical Location & Seq
Reverse (-)
21809524 .. 21813302
3779 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2685 bp
ATGTGGCTTTCGTCCATTAGACTGGGTTTTCCCAGAAAACGCATTCACCCAACACAAAACAATCGCAGCCGTTCGATCTTCGTCCATGGCGGCGGTGGCGGTGTTGGTGCTTTCAAGTGGGCGTCTTCCCAGGCAGCACTTGCCCTCTGGAACTCCAGTTCCTCCCACTCTGATGAATCGTCTGATGATAATTCTGTCAGTGTCTGCACCACAAACGCAGGCACCAATGCTGCCAATAGAACCCATTTCTTCTCCGAATTAGATACCTCTGGGGTTGTTAACAACCTCAACAGTCTAAGAAACGAACCCAATTTGGCGATTTCATTCTTTCACCAGGTGAAAGGAGATGGCTTTCGACACAATGTCTACACGTATTCTGCGCTTATTAGAATTTTGTGCTATTGGGGTCTGGATAGGAAGTTGGATTCTCTCTTTGTGGACCTTATTAATTGCTCTAAAGACCTTGAATTTGAGTTTTCGGATTTGATGGAAGCGATTGCGGAGGGGATTGAGGTTTCCCCATCGACAATCCGAGCTTATGATGCATTGCTCAAGTCTTTTGTCAGTTTGAACATGTTCGATGAGGCTATTGATGTTTTATTTCAGACAAGAAGGCGTGGGTTTGTGCCACATATCTTTACTAGCAATTTTCTAATGAACCGCTTGGTTGAGCACGGTAAAGTGGATATGGCTGTGGCTATATATAAGCAGTTGAAGCGGATTGGTTTGAACCCTAATGATTACACTTATGCAATTATCATCAAGGGACTGTGCAAGAAAGGTAGTTTGGAAGAGGCCGTAGAAGTGTTTCAGGAGATGGAGGAAGCTGGGGTAACCCCTAGTGCCTTTGCCTACACAGCATATATTGAAGGGCTTTGCACCAATCACAGGCCGGATTTAGGGTACCAAGTGCTCCAATCATGCAATGGGGAAAATGTCCTTATCGATGTGTATGCTTATAACGCTGTCATTCGTGGGTTCTGCAATGAGGTGAAGTTTGATGAAGCTGAAAGCGTCTTTCTTGACATGGAAAAGCGAGGGCTGGTCCCTGATTCATATACCTACAGTGCAATGATCTGTGGCTACTGCAAGAGTTCCAAGTTGTTAAAAGCTTTGGCTCTCCATAATGACATGGAGTCAAAGGGTATAAAAACAAATTGTGTGATTGTTAGTTTGATTCTTCAGTGTATGTGTAAGATGGGCATGCCTTCTGAAGCGGTGGATCAGTTTAGAGAATATAAGAGCTTAGGTATCTATCTTGATGAGGTTTCGTACAATATCGCAGTGGATGCTTCGTGCAAGCTGGGGAAAATGGACCAAGCCTTAGAATTTCTTGAAGAGATGAAGTGTAAGCATATGGTTTTAGATATTATGCATTACACAACATTGATCAAAGGCTACTGTCTCCAAGGGAATGTTGCTGAGGCCGTAAGCCTGTTGAAGGAAATGAAGGAAAAGGGTCTGAAGCCAGACATCACTACTTACAATGTACTTGCTGCTGGGTTTTGTAGAAATGGCCTGGGAGCCGAGGCGCTTGACCTTTTGGATTATATGGAGGCACATGGTTTTAAACCAGACTCTGTTACACACAACATGATAATTGAAAATTTATGCATCGGAGGGAAAGTCAAAGAAGCTGAAGGTTTTCTAAACAGTTTGGAATATAAGAATGTAGATACCTATTCTGCCATGGTCAGCGGGTACTGTGAAGCCAACCATACAAAAGAGGCCTATGAACTTCTTATTAGGTTGGCAAAGCAAGGAACTTTAGTTAAACAAGGCGTTTGCTTTAAAGTATTCAGTAAACTTTGTATAGAAAATGATAATGACAGAGCTATTTTGTTGCTTAAGGCAATGTTGGCGTTAAATGTGGATCCTAAAAGAATTATGTACAACAAAGCCATTGCTTCTCTCTGCCAGGCTGGAGAGGTGAAAAAGGCCCGTTGGGTTTTTGATTCTTTGGTTGAGAGAGGGTTAACTCCTGATGTGATTACCTACACAATGATGATGAATAGCTACTGCAAGGTGGATTGTTTGCAAGAAGCCCATGATCTCTTCCATGATATGAAAAAGAGAGGGATTCAACCTGATATCATCACTTACACAGTTTTGCTCGATGGTTTTCCCAAAAGAAATGTAAGAAGGGTTAATTCCTCTCGAGATGCAAGTGGAGATAAGGAAGAAACTTTTGATGCTTGTACTGTTTGGAGTGAGATGAAGGAAATGGAAATAAGACCCGATGTAATTTGTTATACTGTTTTGATAGACAGGCAATGTAAAACTGACAACTTTCAGGATGCTATTGCGCTTTTTGATGAAATGATGAACAGAGGATTAGAGCCTGATACAGTGACATACACAGCACTTCTGGCTGGCTGTTGTAGGAGGGGAGATGTGGATAGGGCTGTAACACTCGCTAATGAGATGTCCTCTAAGGGAATGCTGCCAAATGCCCGGATACTTGCGATTCTACAACATGGAATCCTAAAAGCCACGAAAGTGCAGTTTCGGAAGACCCATTGGCAGGAGCCTTGTGCACTGGAAGTCACTTGGAGGAGAAGAAAGCTCTGTTGGTCGGTCAGCTGGAAGTCAACTGTTCGTATAGGTCTGTTTCTGCATAAGCTATACAGAGCTAATCGTAGGATGGAAGAAGTGCCAAAACAGTGGGGAAAGTTGCTACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

895

Amino Acids

100.87

Weight (kDa)

6.71

Isoelectric Point (pI)

34.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 210 - 259 8e-13 PPR repeat family
TPR_24 PF23276 224 - 340 9.3e-10 Fungal tetratrico peptide repeats
PPR_3 PF13812 234 - 289 1.1e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 242 - 274 2e-12 PPR repeat
PPR PF01535 248 - 278 7.2e-08 PPR repeat
PPR_2 PF13041 252 - 293 2.9e-11 PPR repeat family
PPR_long PF17177 300 - 402 8.9e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 304 - 360 9.8e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 316 - 364 4.3e-17 PPR repeat family
PPR PF01535 319 - 348 3.2e-06 PPR repeat
PPR_1 PF12854 346 - 379 1.6e-08 PPR repeat
PPR PF01535 353 - 383 3.3e-07 PPR repeat
PPR_2 PF13041 355 - 387 9.4e-06 PPR repeat family
PPR_1 PF12854 417 - 449 1.5e-07 PPR repeat
PPR_1 PF12854 453 - 484 1.1e-09 PPR repeat
PPR_3 PF13812 455 - 498 2.8e-10 Pentatricopeptide repeat domain
PPR_2 PF13041 456 - 504 6.5e-16 PPR repeat family
PPR PF01535 459 - 488 2.5e-08 PPR repeat
PPR_1 PF12854 486 - 519 2.3e-08 PPR repeat
PPR_2 PF13041 501 - 538 3.5e-08 PPR repeat family
PPR_1 PF12854 522 - 551 3.3e-06 PPR repeat
PPR_2 PF13041 629 - 675 2.2e-11 PPR repeat family
PPR_1 PF12854 657 - 690 7.3e-08 PPR repeat
PPR_2 PF13041 661 - 708 5.3e-19 PPR repeat family
PPR PF01535 664 - 694 4.4e-08 PPR repeat
PPR_long PF17177 666 - 821 2.8e-08 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 743 - 774 5.9e-06 PPR repeat
PPR_2 PF13041 746 - 795 1.4e-16 PPR repeat family
PPR_3 PF13812 770 - 817 1.2e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 777 - 810 5.9e-11 PPR repeat
PPR_2 PF13041 781 - 818 6.1e-10 PPR repeat family
PPR PF01535 784 - 813 7.6e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010003)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13800 AT1G13800 AT2G26790 AT2G26790
fragaria_vesca FvH4_3g13690
malus_domestica MD05G1241200.v1.1 MD10G1219600.v1.1
prunus_persica Prupe.4G124300_v2.0.a1
pyrus_communis pycom10g18530 pycom10g18570
rosa_chinensis RchiOBHm_Chr5g0022931
rosa_laevigata RLG00000032683
rosa_multiflora Rmu_sc0000401.1_g000029
rosa_roxburghii Rroxscaffold_1G00056410
rosa_rugosa Rorug05G0075600 Rorug05G0075700
rosa_samantha Rh5AG162100 Rh5BG161300 Rh5CG175900 Rh5DG162600
rosa_wichuraiana Rw5G014590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 960
Acc65I GGTACC 1 cut(s) 903
AccB1I GGYRCC 2 cut(s) 221, 903
AccI GTMKAC 1 cut(s) 366
AciI CCGC 8 cut(s) 90, 93, 99, 500, 661, 718, 1217, 1698
AclWI GGATC 3 cut(s) 1230, 1868, 1881
AcsI RAATTY 4 cut(s) 390, 467, 1328, 1606
AcuI CTGAAG 4 cut(s) 1166, 1233, 1484, 1659
AcyI GRCGYC 1 cut(s) 122
AdeI CACNNNGTG 1 cut(s) 337
AfaI GTAC 6 cut(s) 905, 1274, 1491, 1703, 1892, 2200
AfiI CCNNNNNNNGG 4 cut(s) 888, 899, 1441, 2524
AflII CTTAAG 1 cut(s) 1847
AflIII ACRYGT 2 cut(s) 369, 573
AhdI GACNNNNNGTC 2 cut(s) 362, 1135
AjnI CCWGG 4 cut(s) 129, 333, 1518, 1917
AjuI GAANNNNNNNTTGG 4 cut(s) 770, 802, 2554, 2586
AleI CACNNNNGTG 1 cut(s) 2498
AloI GAACNNNNNNTCC 4 cut(s) 142, 143, 174, 175
Alw21I GWGCWC 3 cut(s) 675, 915, 2539
Alw26I GTCTC 1 cut(s) 1409
Alw44I GTGCAC 1 cut(s) 2535
AlwI GGATC 3 cut(s) 1230, 1868, 1881
AlwNI CAGNNNCTG 2 cut(s) 204, 1580
Ama87I CYCGRG 1 cut(s) 2157
AoxI GGCC 6 cut(s) 795, 890, 1425, 1516, 1728, 1938
ApaLI GTGCAC 1 cut(s) 2535
ApeKI GCWGC 5 cut(s) 66, 134, 230, 1496, 2443
ApoI RAATTY 4 cut(s) 390, 467, 1328, 1606
ArsI GACNNNNNNTTYG 2 cut(s) 452, 484
AseI ATTAAT 1 cut(s) 447
Asp700I GAANNNNTTC 3 cut(s) 575, 807, 1644
Asp718I GGTACC 1 cut(s) 903
AspLEI GCGC 3 cut(s) 382, 1534, 2308
AspS9I GGNCC 4 cut(s) 439, 1045, 1315, 1939
AsuC2I CCSGG 1 cut(s) 2455
AsuHPI GGTGA 5 cut(s) 38, 323, 349, 1003, 1942
AvaI CYCGRG 1 cut(s) 2157
AvaII GGWCC 3 cut(s) 439, 1045, 1315
BaeGI GKGCMC 1 cut(s) 2539
BamHI GGATCC 1 cut(s) 1873
BanI GGYRCC 2 cut(s) 221, 903
BbsI GAAGAC 2 cut(s) 117, 2519
Bbv12I GWGCWC 3 cut(s) 675, 915, 2539
BbvCI CCTCAGC 1 cut(s) 1422
BbvI GCAGC 5 cut(s) 78, 146, 217, 1483, 2430
BccI CCATC 7 cut(s) 341, 481, 529, 811, 1192, 2111, 2638
BceAI ACGGC 3 cut(s) 54, 782, 1412
BcgI CGANNNNNNTGC 2 cut(s) 935, 969
BciT130I CCWGG 4 cut(s) 131, 335, 1520, 1919
BciVI GTATCC 1 cut(s) 2451
BclI TGATCA 1 cut(s) 1389
BcnI CCSGG 1 cut(s) 2455
BcoDI GTCTC 1 cut(s) 1409
BfaI CTAG 2 cut(s) 642, 840
BfmI CTRYAG 1 cut(s) 1063
BfoI RGCGCY 1 cut(s) 1535
BfrI CTTAAG 1 cut(s) 1847
BfuI GTATCC 1 cut(s) 2451
BisI GCNGC 6 cut(s) 67, 91, 135, 231, 1497, 2444
BlsI GCNGC 6 cut(s) 68, 92, 136, 232, 1498, 2445
Bme1390I CCNGG 5 cut(s) 131, 335, 1520, 1919, 2455
Bme18I GGWCC 3 cut(s) 439, 1045, 1315
BmeRI GACNNNNNGTC 2 cut(s) 362, 1135
BmeT110I CYCGRG 1 cut(s) 2157
BmgT120I GGNCC 4 cut(s) 439, 1045, 1315, 1939
BmiI GGNNCC 6 cut(s) 223, 905, 1047, 1525, 1875, 2529
BmrFI CCNGG 5 cut(s) 131, 335, 1520, 1919, 2455
BmrI ACTGGG 1 cut(s) 32
BmsI GCATC 6 cut(s) 532, 1279, 1623, 2152, 2182, 2287
BmuI ACTGGG 1 cut(s) 32
BpiI GAAGAC 2 cut(s) 117, 2519
BplI GAGNNNNNCTC 2 cut(s) 2414, 2446
BpmI CTGGAG 2 cut(s) 139, 1944
Bpu10I CCTNAGC 2 cut(s) 1246, 1422
BpuEI CTTGAG 1 cut(s) 536
BpuMI CCSGG 1 cut(s) 2455
Bsa29I ATCGAT 1 cut(s) 945
BsaAI YACGTR 1 cut(s) 372
BsaHI GRCGYC 1 cut(s) 122
BsaJI CCNNGG 6 cut(s) 85, 129, 1408, 1519, 1527, 1689
BsaXI ACNNNNNCTCC 2 cut(s) 1611, 1641
Bsc4I CCNNNNNNNGG 4 cut(s) 888, 899, 1441, 2524
Bse1I ACTGG 3 cut(s) 27, 156, 2544
Bse3DI GCAATG 7 cut(s) 545, 931, 991, 1077, 1860, 1902, 2279
BseBI CCWGG 4 cut(s) 131, 335, 1520, 1919
BseCI ATCGAT 1 cut(s) 945
BseDI CCNNGG 6 cut(s) 85, 129, 1408, 1519, 1527, 1689
BseGI GGATG 3 cut(s) 1294, 2302, 2649
BseLI CCNNNNNNNGG 4 cut(s) 888, 899, 1441, 2524
BseMI GCAATG 7 cut(s) 545, 931, 991, 1077, 1860, 1902, 2279
BseMII CTCAG 1 cut(s) 1413
BseNI ACTGG 3 cut(s) 27, 156, 2544
BseRI GAGGAG 1 cut(s) 2569
BseSI GKGCMC 1 cut(s) 2539
BseXI GCAGC 5 cut(s) 78, 146, 217, 1483, 2430
BseYI CCCAGC 3 cut(s) 827, 1303, 1499
BsgI GTGCAG 2 cut(s) 190, 2522
BshFI GGCC 6 cut(s) 797, 892, 1427, 1518, 1730, 1940
BshNI GGYRCC 2 cut(s) 221, 903
BshVI ATCGAT 1 cut(s) 945
BsiHKAI GWGCWC 3 cut(s) 675, 915, 2539
BsiHKCI CYCGRG 1 cut(s) 2157
BsiSI CCGG 2 cut(s) 893, 2455
BslFI GGGAC 2 cut(s) 780, 1031
BslI CCNNNNNNNGG 4 cut(s) 888, 899, 1441, 2524
BsmAI GTCTC 1 cut(s) 1409
BsmFI GGGAC 2 cut(s) 780, 1031
BsmI GAATGC 2 cut(s) 42, 2445
BsnI GGCC 6 cut(s) 797, 892, 1427, 1518, 1730, 1940
BsoBI CYCGRG 1 cut(s) 2157
Bsp1286I GDGCHC 3 cut(s) 675, 915, 2539
Bsp1407I TGTACA 1 cut(s) 1890
Bsp143I GATC 6 cut(s) 75, 1074, 1222, 1389, 1873, 2050
Bsp19I CCATGG 2 cut(s) 85, 1689
BspACI CCGC 8 cut(s) 90, 93, 99, 500, 661, 718, 1217, 1698
BspANI GGCC 6 cut(s) 797, 892, 1427, 1518, 1730, 1940
BspCNI CTCAG 1 cut(s) 1414
BspDI ATCGAT 1 cut(s) 945
BspLI GGNNCC 6 cut(s) 223, 905, 1047, 1525, 1875, 2529
BspPI GGATC 3 cut(s) 1230, 1868, 1881
BspT107I GGYRCC 2 cut(s) 221, 903
BspTI CTTAAG 1 cut(s) 1847
BsrDI GCAATG 7 cut(s) 545, 931, 991, 1077, 1860, 1902, 2279
BsrGI TGTACA 1 cut(s) 1890
BsrI ACTGG 3 cut(s) 27, 156, 2544
BssECI CCNNGG 6 cut(s) 85, 129, 1408, 1519, 1527, 1689
BssMI GATC 6 cut(s) 75, 1074, 1222, 1389, 1873, 2050
BssNI GRCGYC 1 cut(s) 122
BssT1I CCWWGG 3 cut(s) 85, 1408, 1689
Bst2UI CCWGG 4 cut(s) 131, 335, 1520, 1919
Bst6I CTCTTC 3 cut(s) 786, 1332, 2060
BstACI GRCGYC 1 cut(s) 122
BstAFI CTTAAG 1 cut(s) 1847
BstAPI GCANNNNNTGC 2 cut(s) 140, 1289
BstAUI TGTACA 1 cut(s) 1890
BstBAI YACGTR 1 cut(s) 372
BstC8I GCNNGC 4 cut(s) 220, 1205, 1301, 2374
BstDEI CTNAG 5 cut(s) 296, 1246, 1324, 1422, 2433
BstDSI CCRYGG 2 cut(s) 85, 1689
BstEII GGTNACC 1 cut(s) 832
BstENI CCTNNNNNAGG 1 cut(s) 1439
BstF5I GGATG 3 cut(s) 1294, 2302, 2649
BstH2I RGCGCY 1 cut(s) 1535
BstHHI GCGC 3 cut(s) 382, 1534, 2308
BstKTI GATC 6 cut(s) 78, 1077, 1225, 1392, 1876, 2053
BstMAI GTCTC 1 cut(s) 1409
BstMBI GATC 6 cut(s) 75, 1074, 1222, 1389, 1873, 2050
BstMWI GCNNNNNNNGC 9 cut(s) 96, 140, 542, 715, 857, 962, 1289, 1859, 2369
BstNI CCWGG 4 cut(s) 131, 335, 1520, 1919
BstNSI RCATGY 2 cut(s) 577, 1207
BstPI GGTNACC 1 cut(s) 832
BstSCI CCNGG 5 cut(s) 129, 333, 1518, 1917, 2453
BstSFI CTRYAG 1 cut(s) 1063
BstSLI GKGCMC 1 cut(s) 2539
BstV1I GCAGC 5 cut(s) 78, 146, 217, 1483, 2430
BstV2I GAAGAC 2 cut(s) 117, 2519
BstX2I RGATCY 1 cut(s) 1873
BstXI CCANNNNNNTGG 2 cut(s) 22, 2664
BstYI RGATCY 1 cut(s) 1873
Bsu15I ATCGAT 1 cut(s) 945
BsuI GTATCC 1 cut(s) 2451
BsuRI GGCC 6 cut(s) 797, 892, 1427, 1518, 1730, 1940
BsuTUI ATCGAT 1 cut(s) 945
BtgI CCRYGG 2 cut(s) 85, 1689
BtsCI GGATG 3 cut(s) 1294, 2302, 2649
BtsI GCAGTG 1 cut(s) 1290
BtsIMutI CAGTG 7 cut(s) 205, 1072, 1190, 1290, 2355, 2537, 2669
Cac8I GCNNGC 4 cut(s) 220, 1205, 1301, 2374
CaiI CAGNNNCTG 2 cut(s) 204, 1580
CfoI GCGC 3 cut(s) 382, 1534, 2308
Cfr13I GGNCC 4 cut(s) 439, 1045, 1315, 1939
ClaI ATCGAT 1 cut(s) 945
CseI GACGC 2 cut(s) 111, 1003
CsiI ACCWGGT 1 cut(s) 333
Csp6I GTAC 6 cut(s) 904, 1273, 1490, 1702, 1891, 2199
CviQI GTAC 6 cut(s) 904, 1273, 1490, 1702, 1891, 2199
DdeI CTNAG 5 cut(s) 296, 1246, 1324, 1422, 2433
DpnI GATC 6 cut(s) 77, 1076, 1224, 1391, 1875, 2052
DpnII GATC 6 cut(s) 75, 1074, 1222, 1389, 1873, 2050
DraI TTTAAA 2 cut(s) 1570, 1792
DraIII CACNNNGTG 1 cut(s) 337
DriI GACNNNNNGTC 2 cut(s) 362, 1135
Eam1104I CTCTTC 3 cut(s) 786, 1332, 2060
Eam1105I GACNNNNNGTC 2 cut(s) 362, 1135
EarI CTCTTC 3 cut(s) 786, 1332, 2060
Eco130I CCWWGG 3 cut(s) 85, 1408, 1689
Eco147I AGGCCT 1 cut(s) 1730
Eco32I GATATC 1 cut(s) 2092
Eco47I GGWCC 3 cut(s) 439, 1045, 1315
Eco57I CTGAAG 4 cut(s) 1166, 1233, 1484, 1659
Eco88I CYCGRG 1 cut(s) 2157
Eco91I GGTNACC 1 cut(s) 832
EcoNI CCTNNNNNAGG 1 cut(s) 1439
EcoO65I GGTNACC 1 cut(s) 832
EcoRII CCWGG 4 cut(s) 129, 333, 1518, 1917
EcoRV GATATC 1 cut(s) 2092
EcoT14I CCWWGG 3 cut(s) 85, 1408, 1689
EcoT22I ATGCAT 3 cut(s) 547, 1377, 1616
ErhI CCWWGG 3 cut(s) 85, 1408, 1689
FaqI GGGAC 2 cut(s) 780, 1031
FauI CCCGC 1 cut(s) 1691
FauNDI CATATG 1 cut(s) 1356
FbaI TGATCA 1 cut(s) 1389
FblI GTMKAC 1 cut(s) 366
Fnu4HI GCNGC 6 cut(s) 67, 91, 135, 231, 1497, 2444
FokI GGATG 3 cut(s) 1301, 2309, 2656
Fsp4HI GCNGC 6 cut(s) 67, 91, 135, 231, 1497, 2444
FspBI CTAG 2 cut(s) 642, 840
GlaI GCGC 3 cut(s) 381, 1533, 2307
GluI GCNGC 6 cut(s) 67, 91, 135, 231, 1497, 2444
GsaI CCCAGC 3 cut(s) 831, 1307, 1503
GsuI CTGGAG 2 cut(s) 139, 1944
HaeII RGCGCY 1 cut(s) 1535
HaeIII GGCC 6 cut(s) 797, 892, 1427, 1518, 1730, 1940
HapII CCGG 2 cut(s) 893, 2455
HgaI GACGC 2 cut(s) 111, 1003
HhaI GCGC 3 cut(s) 382, 1534, 2308
Hin1I GRCGYC 1 cut(s) 122
Hin6I GCGC 3 cut(s) 380, 1532, 2306
HinP1I GCGC 3 cut(s) 380, 1532, 2306
HincII GTYRAC 3 cut(s) 280, 1977, 2592
HindII GTYRAC 3 cut(s) 280, 1977, 2592
HindIII AAGCTT 1 cut(s) 1110
HpaI GTTAAC 2 cut(s) 280, 1977
HpaII CCGG 2 cut(s) 893, 2455
HphI GGTGA 5 cut(s) 38, 323, 349, 1003, 1942
Hpy166II GTNNAC 7 cut(s) 280, 367, 439, 1805, 1977, 2537, 2592
Hpy8I GTNNAC 7 cut(s) 280, 367, 439, 1805, 1977, 2537, 2592
HpyAV CCTTC 8 cut(s) 606, 863, 1218, 1435, 1444, 1634, 2136, 2212
HpyCH4IV ACGT 1 cut(s) 371
HpyF10VI GCNNNNNNNGC 9 cut(s) 96, 140, 542, 715, 857, 962, 1289, 1859, 2369
HpyF3I CTNAG 5 cut(s) 296, 1246, 1324, 1422, 2433
HpySE526I ACGT 1 cut(s) 371
Hsp92I GRCGYC 1 cut(s) 122
HspAI GCGC 3 cut(s) 380, 1532, 2306
KpnI GGTACC 1 cut(s) 907
Ksp22I TGATCA 1 cut(s) 1389
KspAI GTTAAC 2 cut(s) 280, 1977
Kzo9I GATC 6 cut(s) 75, 1074, 1222, 1389, 1873, 2050
LmnI GCTCC 3 cut(s) 918, 1523, 2527
Lsp1109I GCAGC 5 cut(s) 78, 146, 217, 1483, 2430
LweI GCATC 6 cut(s) 532, 1279, 1623, 2152, 2182, 2287
MabI ACCWGGT 1 cut(s) 333
MaeI CTAG 2 cut(s) 642, 840
MaeII ACGT 1 cut(s) 371
MaeIII GTNAC 5 cut(s) 832, 1582, 2350, 2407, 2545
MalI GATC 6 cut(s) 77, 1076, 1224, 1391, 1875, 2052
MboI GATC 6 cut(s) 75, 1074, 1222, 1389, 1873, 2050
MflI RGATCY 1 cut(s) 1873
MhlI GDGCHC 3 cut(s) 675, 915, 2539
MlyI GAGTC 2 cut(s) 1145, 1571
MmeI TCCRAC 1 cut(s) 402
Mph1103I ATGCAT 3 cut(s) 547, 1377, 1616
MroXI GAANNNNTTC 3 cut(s) 575, 807, 1644
MslI CAYNNNNRTG 3 cut(s) 171, 2003, 2498
MspA1I CMGCKG 2 cut(s) 1698, 2583
MspCI CTTAAG 1 cut(s) 1847
MspI CCGG 2 cut(s) 893, 2455
MspR9I CCNGG 5 cut(s) 131, 335, 1520, 1919, 2455
Mva1269I GAATGC 2 cut(s) 42, 2445
MvaI CCWGG 4 cut(s) 131, 335, 1520, 1919
MwoI GCNNNNNNNGC 9 cut(s) 96, 140, 542, 715, 857, 962, 1289, 1859, 2369
NciI CCSGG 1 cut(s) 2455
NcoI CCATGG 2 cut(s) 85, 1689
NdeI CATATG 1 cut(s) 1356
NdeII GATC 6 cut(s) 75, 1074, 1222, 1389, 1873, 2050
NlaIV GGNNCC 6 cut(s) 223, 905, 1047, 1525, 1875, 2529
NmeAIII GCCGAG 1 cut(s) 1552
NmuCI GTSAC 2 cut(s) 2350, 2545
NsiI ATGCAT 3 cut(s) 547, 1377, 1616
NspI RCATGY 2 cut(s) 577, 1207
OliI CACNNNNGTG 1 cut(s) 2498
PaeI GCATGC 1 cut(s) 1207
PaeR7I CTCGAG 1 cut(s) 2157
PceI AGGCCT 1 cut(s) 1730
PciI ACATGT 1 cut(s) 573
PctI GAATGC 2 cut(s) 42, 2445
PdmI GAANNNNTTC 3 cut(s) 575, 807, 1644
PfeI GAWTC 8 cut(s) 176, 425, 1052, 1177, 1955, 2080, 2467, 2481
PkrI GCNGC 6 cut(s) 68, 92, 136, 232, 1498, 2445
PleI GAGTC 2 cut(s) 1144, 1571
PpsI GAGTC 2 cut(s) 1144, 1571
Ppu21I YACGTR 1 cut(s) 372
PscI ACATGT 1 cut(s) 573
PshBI ATTAAT 1 cut(s) 447
PsiI TTATAA 1 cut(s) 960
Psp6I CCWGG 4 cut(s) 129, 333, 1518, 1917
PspEI GGTNACC 1 cut(s) 832
PspFI CCCAGC 3 cut(s) 827, 1303, 1499
PspGI CCWGG 4 cut(s) 129, 333, 1518, 1917
PspN4I GGNNCC 6 cut(s) 223, 905, 1047, 1525, 1875, 2529
PspPI GGNCC 4 cut(s) 439, 1045, 1315, 1939
PstNI CAGNNNCTG 2 cut(s) 204, 1580
PsuI RGATCY 1 cut(s) 1873
PvuII CAGCTG 1 cut(s) 2583
RsaI GTAC 6 cut(s) 905, 1274, 1491, 1703, 1892, 2200
RsaNI GTAC 6 cut(s) 904, 1273, 1490, 1702, 1891, 2199
RseI CAYNNNNRTG 3 cut(s) 171, 2003, 2498
SatI GCNGC 6 cut(s) 67, 91, 135, 231, 1497, 2444
Sau3AI GATC 6 cut(s) 75, 1074, 1222, 1389, 1873, 2050
Sau96I GGNCC 4 cut(s) 439, 1045, 1315, 1939
SchI GAGTC 2 cut(s) 1145, 1571
ScrFI CCNGG 5 cut(s) 131, 335, 1520, 1919, 2455
SduI GDGCHC 3 cut(s) 675, 915, 2539
SexAI ACCWGGT 1 cut(s) 333
SfaNI GCATC 6 cut(s) 532, 1279, 1623, 2152, 2182, 2287
SfcI CTRYAG 1 cut(s) 1063
Sfr274I CTCGAG 1 cut(s) 2157
SinI GGWCC 3 cut(s) 439, 1045, 1315
SlaI CTCGAG 1 cut(s) 2157
SmiMI CAYNNNNRTG 3 cut(s) 171, 2003, 2498
SmlI CTYRAG 3 cut(s) 551, 1847, 2157
SmoI CTYRAG 3 cut(s) 551, 1847, 2157
SphI GCATGC 1 cut(s) 1207
SseBI AGGCCT 1 cut(s) 1730
SsiI CCGC 8 cut(s) 90, 93, 99, 500, 661, 718, 1217, 1698
SspMI CTAG 2 cut(s) 642, 840
StuI AGGCCT 1 cut(s) 1730
StyD4I CCNGG 5 cut(s) 129, 333, 1518, 1917, 2453
StyI CCWWGG 3 cut(s) 85, 1408, 1689
TaiI ACGT 1 cut(s) 374
TaqI TCGA 7 cut(s) 74, 355, 524, 579, 945, 2115, 2158
TaqII GACCGA 1 cut(s) 2566
TatI WGTACW 3 cut(s) 1489, 1890, 2198
TauI GCSGC 1 cut(s) 93
TfiI GAWTC 8 cut(s) 176, 425, 1052, 1177, 1955, 2080, 2467, 2481
TscAI CASTG 7 cut(s) 205, 1072, 1190, 1290, 2355, 2544, 2669
TseFI GTSAC 2 cut(s) 2350, 2545
TseI GCWGC 5 cut(s) 66, 134, 230, 1496, 2443
Tsp45I GTSAC 2 cut(s) 2350, 2545
TspRI CASTG 7 cut(s) 205, 1072, 1190, 1290, 2355, 2544, 2669
Vha464I CTTAAG 1 cut(s) 1847
VneI GTGCAC 1 cut(s) 2535
VpaK11BI GGWCC 3 cut(s) 439, 1045, 1315
VspI ATTAAT 1 cut(s) 447
XagI CCTNNNNNAGG 1 cut(s) 1439
XapI RAATTY 4 cut(s) 390, 467, 1328, 1606
XceI RCATGY 2 cut(s) 577, 1207
XcmI CCANNNNNNNNNTGG 2 cut(s) 92, 923
XhoI CTCGAG 1 cut(s) 2157
XmiI GTMKAC 1 cut(s) 366
XmnI GAANNNNTTC 3 cut(s) 575, 807, 1644
XspI CTAG 2 cut(s) 642, 840
Zsp2I ATGCAT 3 cut(s) 547, 1377, 1616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.