Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0008331

Physical Location & Seq

Genomic Coordinates Forward (+)

23651493 .. 23654029

Gene Structure 2537 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGTTATTTTGGTATGACATTGATCTGGGTGATTATTACTTTGCAGCTACATATTGTTTTGGGACTGTTCACATCAACATCCTCATGATTTCTTCTGTGCACGATCATTCAGATAATAGTGATTCTGATGACCAGCAAAGTCATTCAGAGTCTCAAGCTCATTCATCCTTACCTGCAATTGGAATGTCACATCCTGGAGTTCCAACTCCAAATATGCAGTATGCAGTACCTCCACAGGTTGGAACAGGACATGCAGTGGCACAAGGAGGTTACCCCTATCCAGACCCTTACTACAGAAGCATCTTTGCTCCCTATGAAACACAGCCATATCCTCCACAGCCCTATGTGGCGCAACCAACGGTTCATCTTCAGTTAATGGGAATCCAGCAAGCAGGTGTTCCACTGCCATCAGATGCAGTTGAGGAACCTGTGTTTGTAAATGCAAAACAGTATCATGGTATCTTGCGACGTCGGCAGTCTCGTGCTAAAGCAGAATCTGAAAATAAAGCACTTAAGAATCGAAAGCCATACTTGCATGAATCTCGACACCAGCATGCATTGAGAAGAGCTAGAGGATGCGGGGGTCGCTTTCTTAATGCGAAGAAAAATGGGAACCAACAGGATGAAATGACATCGGGTGACAAATCCCAGTCAAATATCAATTTGAACACTGATAAAAATGAGCCTGCTTCCTCAGATGGAACATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

237

Amino Acids

26.21

Weight (kDa)

6.44

Isoelectric Point (pI)

67.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFB_NFYA	PF02045	142 - 197	5.4e-27	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0008331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30500 AT1G30500
fragaria_vesca	FvH4_3g10080 FvH4_3g10080
malus_domestica	MD05G1273300.v1.1 MD10G1253300.v1.1
prunus_persica	Prupe.4G090200_v2.0.a1 Prupe.4G090200_v2.0.a1
pyrus_communis	pycom05g25500 pycom10g20900
rosa_chinensis	RchiOBHm_Chr5g0015971
rosa_laevigata	RLG00000032233
rosa_multiflora	Rmu_sc0000299.1_g000027 Rmu_sc0001878.1_g000008
rosa_roxburghii	Rroxscaffold_1G00060650
rosa_rugosa	Rorug05G0030600 Rorug05G0030700 Rorug05G0030700
rosa_samantha	Rh5AG124000 Rh5BG122900 Rh5CG134300 Rh5DG122300
rosa_wichuraiana	Rw5G010710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	383
AatII	GACGTC	1 cut(s)	472
Acc36I	ACCTGC	2 cut(s)	181, 383
AccB7I	CCANNNNNTGG	1 cut(s)	239
AciI	CCGC	1 cut(s)	579
AcuI	CTGAAG	1 cut(s)	353
AcyI	GRCGYC	1 cut(s)	469
AfaI	GTAC	1 cut(s)	228
AfiI	CCNNNNNNNGG	2 cut(s)	179, 239
AflII	CTTAAG	1 cut(s)	512
AgsI	TTSAA	1 cut(s)	667
AjnI	CCWGG	1 cut(s)	193
AluBI	AGCT	3 cut(s)	47, 158, 569
AluI	AGCT	3 cut(s)	47, 158, 569
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	2 cut(s)	156, 483
Alw44I	GTGCAC	1 cut(s)	98
AlwNI	CAGNNNCTG	1 cut(s)	497
ApaLI	GTGCAC	1 cut(s)	98
ApeKI	GCWGC	1 cut(s)	44
AspLEI	GCGC	1 cut(s)	352
AsuHPI	GGTGA	2 cut(s)	41, 650
BaeGI	GKGCMC	1 cut(s)	102
BauI	CACGAG	1 cut(s)	480
Bbv12I	GWGCWC	1 cut(s)	102
BbvI	GCAGC	1 cut(s)	56
BccI	CCATC	2 cut(s)	415, 692
BcgI	CGANNNNNNTGC	2 cut(s)	524, 558
BciT130I	CCWGG	1 cut(s)	195
BcoDI	GTCTC	2 cut(s)	156, 483
BfaI	CTAG	1 cut(s)	570
BfmI	CTRYAG	1 cut(s)	292
BfrI	CTTAAG	1 cut(s)	512
BfuAI	ACCTGC	2 cut(s)	181, 383
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
Bme1390I	CCNGG	1 cut(s)	195
BmiI	GGNNCC	2 cut(s)	426, 614
BmrFI	CCNGG	1 cut(s)	195
BmrI	ACTGGG	1 cut(s)	643
BmsI	GCATC	3 cut(s)	309, 403, 566
BmuI	ACTGGG	1 cut(s)	643
BpmI	CTGGAG	1 cut(s)	216
BpuEI	CTTGAG	1 cut(s)	138
BsaHI	GRCGYC	1 cut(s)	469
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 239
Bse1I	ACTGG	1 cut(s)	649
BseBI	CCWGG	1 cut(s)	195
BseGI	GGATG	6 cut(s)	78, 164, 190, 581, 628, 704
BseLI	CCNNNNNNNGG	2 cut(s)	179, 239
BseMII	CTCAG	1 cut(s)	708
BseNI	ACTGG	1 cut(s)	649
BseSI	GKGCMC	1 cut(s)	102
BseXI	GCAGC	1 cut(s)	56
BsiHKAI	GWGCWC	1 cut(s)	102
BslFI	GGGAC	1 cut(s)	76
BslI	CCNNNNNNNGG	2 cut(s)	179, 239
BsmAI	GTCTC	2 cut(s)	156, 483
BsmFI	GGGAC	1 cut(s)	76
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp143I	GATC	2 cut(s)	22, 103
BspACI	CCGC	1 cut(s)	579
BspCNI	CTCAG	1 cut(s)	707
BspHI	TCATGA	1 cut(s)	84
BspLI	GGNNCC	2 cut(s)	426, 614
BspMI	ACCTGC	2 cut(s)	181, 383
BspQI	GCTCTTC	1 cut(s)	559
BspTI	CTTAAG	1 cut(s)	512
BsrI	ACTGG	1 cut(s)	649
BssMI	GATC	2 cut(s)	22, 103
BssNI	GRCGYC	1 cut(s)	469
BssSI	CACGAG	1 cut(s)	480
Bst2BI	CACGAG	1 cut(s)	480
Bst2UI	CCWGG	1 cut(s)	195
Bst4CI	ACNGT	3 cut(s)	67, 361, 450
Bst6I	CTCTTC	1 cut(s)	559
BstACI	GRCGYC	1 cut(s)	469
BstAFI	CTTAAG	1 cut(s)	512
BstC8I	GCNNGC	3 cut(s)	390, 555, 687
BstDEI	CTNAG	1 cut(s)	694
BstEII	GGTNACC	1 cut(s)	269
BstF5I	GGATG	6 cut(s)	78, 164, 190, 581, 628, 704
BstHHI	GCGC	1 cut(s)	352
BstKTI	GATC	2 cut(s)	25, 106
BstMAI	GTCTC	2 cut(s)	156, 483
BstMBI	GATC	2 cut(s)	22, 103
BstMWI	GCNNNNNNNGC	3 cut(s)	472, 532, 585
BstNI	CCWGG	1 cut(s)	195
BstNSI	RCATGY	2 cut(s)	254, 557
BstPI	GGTNACC	1 cut(s)	269
BstSCI	CCNGG	1 cut(s)	193
BstSFI	CTRYAG	1 cut(s)	292
BstSLI	GKGCMC	1 cut(s)	102
BstV1I	GCAGC	1 cut(s)	56
BtsCI	GGATG	6 cut(s)	78, 164, 190, 581, 628, 704
BtsI	GCAGTG	2 cut(s)	261, 401
BtsIMutI	CAGTG	3 cut(s)	261, 401, 669
BveI	ACCTGC	2 cut(s)	181, 383
Cac8I	GCNNGC	3 cut(s)	390, 555, 687
CaiI	CAGNNNCTG	1 cut(s)	497
CciI	TCATGA	1 cut(s)	84
CfoI	GCGC	1 cut(s)	352
Csp6I	GTAC	1 cut(s)	227
CviAII	CATG	5 cut(s)	85, 251, 455, 536, 554
CviJI	RGCY	7 cut(s)	47, 158, 325, 340, 526, 569, 685
CviKI_1	RGCY	7 cut(s)	47, 158, 325, 340, 526, 569, 685
CviQI	GTAC	1 cut(s)	227
DdeI	CTNAG	1 cut(s)	694
DpnI	GATC	2 cut(s)	24, 105
DpnII	GATC	2 cut(s)	22, 103
Eam1104I	CTCTTC	1 cut(s)	559
EarI	CTCTTC	1 cut(s)	559
Eco57I	CTGAAG	1 cut(s)	353
Eco91I	GGTNACC	1 cut(s)	269
EcoO65I	GGTNACC	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	193
EcoT22I	ATGCAT	1 cut(s)	559
FaeI	CATG	5 cut(s)	88, 254, 458, 539, 557
FalI	AAGNNNNNCTT	2 cut(s)	515, 547
FaqI	GGGAC	1 cut(s)	76
FatI	CATG	5 cut(s)	84, 250, 454, 535, 553
FauI	CCCGC	1 cut(s)	572
Fnu4HI	GCNGC	1 cut(s)	45
FokI	GGATG	6 cut(s)	65, 151, 177, 588, 635, 691
Fsp4HI	GCNGC	1 cut(s)	45
FspBI	CTAG	1 cut(s)	570
GlaI	GCGC	1 cut(s)	351
GluI	GCNGC	1 cut(s)	45
GsuI	CTGGAG	1 cut(s)	216
HhaI	GCGC	1 cut(s)	352
Hin1I	GRCGYC	1 cut(s)	469
Hin1II	CATG	5 cut(s)	88, 254, 458, 539, 557
Hin6I	GCGC	1 cut(s)	350
HinP1I	GCGC	1 cut(s)	350
HinfI	GANTC	6 cut(s)	122, 149, 381, 494, 517, 539
HphI	GGTGA	2 cut(s)	41, 650
Hpy166II	GTNNAC	2 cut(s)	70, 100
Hpy188I	TCNGA	6 cut(s)	112, 127, 148, 412, 499, 697
Hpy188III	TCNNGA	3 cut(s)	85, 281, 543
Hpy8I	GTNNAC	2 cut(s)	70, 100
Hpy99I	CGWCG	2 cut(s)	471, 474
HpyCH4III	ACNGT	3 cut(s)	67, 361, 450
HpyCH4IV	ACGT	1 cut(s)	469
HpyF10VI	GCNNNNNNNGC	3 cut(s)	472, 532, 585
HpyF3I	CTNAG	1 cut(s)	694
HpySE526I	ACGT	1 cut(s)	469
Hsp92I	GRCGYC	1 cut(s)	469
Hsp92II	CATG	5 cut(s)	88, 254, 458, 539, 557
HspAI	GCGC	1 cut(s)	350
Kzo9I	GATC	2 cut(s)	22, 103
LguI	GCTCTTC	1 cut(s)	559
LmnI	GCTCC	1 cut(s)	313
Lsp1109I	GCAGC	1 cut(s)	56
LweI	GCATC	3 cut(s)	309, 403, 566
MaeI	CTAG	1 cut(s)	570
MaeII	ACGT	1 cut(s)	469
MaeIII	GTNAC	3 cut(s)	186, 269, 638
MalI	GATC	2 cut(s)	24, 105
MboI	GATC	2 cut(s)	22, 103
MboII	GAAGA	4 cut(s)	84, 359, 576, 613
MfeI	CAATTG	1 cut(s)	177
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	2 cut(s)	177, 661
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	2 cut(s)	220, 227
MnlI	CCTC	7 cut(s)	92, 240, 260, 342, 415, 566, 703
Mph1103I	ATGCAT	1 cut(s)	559
MseI	TTAA	3 cut(s)	374, 513, 594
MslI	CAYNNNNRTG	2 cut(s)	83, 552
MspCI	CTTAAG	1 cut(s)	512
MspR9I	CCNGG	1 cut(s)	195
MunI	CAATTG	1 cut(s)	177
MvaI	CCWGG	1 cut(s)	195
MwoI	GCNNNNNNNGC	3 cut(s)	472, 532, 585
NdeII	GATC	2 cut(s)	22, 103
NlaIII	CATG	5 cut(s)	88, 254, 458, 539, 557
NlaIV	GGNNCC	2 cut(s)	426, 614
NmuCI	GTSAC	2 cut(s)	186, 638
NsiI	ATGCAT	1 cut(s)	559
NspI	RCATGY	2 cut(s)	254, 557
PaeI	GCATGC	1 cut(s)	557
PagI	TCATGA	1 cut(s)	84
PaqCI	CACCTGC	1 cut(s)	383
PciSI	GCTCTTC	1 cut(s)	559
PcsI	WCGNNNNNNNCGW	1 cut(s)	478
PfeI	GAWTC	5 cut(s)	122, 381, 494, 517, 539
PflMI	CCANNNNNTGG	1 cut(s)	239
PfoI	TCCNGGA	1 cut(s)	193
PkrI	GCNGC	1 cut(s)	46
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
Psp6I	CCWGG	1 cut(s)	193
PspEI	GGTNACC	1 cut(s)	269
PspGI	CCWGG	1 cut(s)	193
PspN4I	GGNNCC	2 cut(s)	426, 614
PstNI	CAGNNNCTG	1 cut(s)	497
RsaI	GTAC	1 cut(s)	228
RsaNI	GTAC	1 cut(s)	227
RseI	CAYNNNNRTG	2 cut(s)	83, 552
SapI	GCTCTTC	1 cut(s)	559
SaqAI	TTAA	3 cut(s)	374, 513, 594
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	2 cut(s)	22, 103
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	1 cut(s)	195
SduI	GDGCHC	1 cut(s)	102
SfaNI	GCATC	3 cut(s)	309, 403, 566
SfcI	CTRYAG	1 cut(s)	292
SmiMI	CAYNNNNRTG	2 cut(s)	83, 552
SmlI	CTYRAG	2 cut(s)	153, 512
SmoI	CTYRAG	2 cut(s)	153, 512
SphI	GCATGC	1 cut(s)	557
Sse9I	AATT	2 cut(s)	177, 661
SsiI	CCGC	1 cut(s)	579
SspMI	CTAG	1 cut(s)	570
StyD4I	CCNGG	1 cut(s)	193
TaaI	ACNGT	3 cut(s)	67, 361, 450
TaiI	ACGT	1 cut(s)	472
TaqI	TCGA	2 cut(s)	520, 544
TasI	AATT	2 cut(s)	177, 661
TfiI	GAWTC	5 cut(s)	122, 381, 494, 517, 539
Tru1I	TTAA	3 cut(s)	374, 513, 594
Tru9I	TTAA	3 cut(s)	374, 513, 594
TscAI	CASTG	3 cut(s)	261, 408, 676
TseFI	GTSAC	2 cut(s)	186, 638
TseI	GCWGC	1 cut(s)	44
Tsp45I	GTSAC	2 cut(s)	186, 638
TspDTI	ATGAA	5 cut(s)	153, 330, 353, 552, 639
TspRI	CASTG	3 cut(s)	261, 408, 676
Van91I	CCANNNNNTGG	1 cut(s)	239
Vha464I	CTTAAG	1 cut(s)	512
VneI	GTGCAC	1 cut(s)	98
XceI	RCATGY	2 cut(s)	254, 557
XspI	CTAG	1 cut(s)	570
ZraI	GACGTC	1 cut(s)	470
Zsp2I	ATGCAT	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.