Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0010836

Physical Location & Seq

Genomic Coordinates Reverse (-)

24453672 .. 24454235

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGCTTTACTCTGGTCAAGCTCATACCAATTCCCAGATGAATAAGTTGTTAGAGACCATGGCTGATTGGTACAAGTATGCTGATAATCGCAAGGAAGTTGTTGGGTTTTGTGCCTATGTTATACGTAGCTCTTTGGCTAAACCGTACGCTGCAAGGTATAGACTAAAATCACGGGCCAAGGTGAATGGAATAGCTTCATGCAATCTCAGTCGTCCACTGAGGGAGAGCAGCAACAATTCTGCACCCGAGTATTCTGATCTATTGAGGATGGGACTTGTTGATCCAATCGAAGGTGTTCGGTTCCCTCACATGTCTCTGATTCCATCTTGTGATTACTCCCCTTTTCCTAGAAATTGGGTACCCGCTCATGAGCAGCTCTTACGTGACTACATCAGACTTGAAGACCCAAAATTCTTTTGTATAACTGAAATTCTGTGGGATTTCAAAACCCTTGGGGTTCGGAACTATAAGCTTAGGGAAGAAAGAGAAACTAGAAAAGATCGTGCCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000374 GO:0000375 GO:0000377 GO:0000959 GO:0000963 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006109 GO:0006139 GO:0006396 GO:0006397 GO:0006521 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009791 GO:0009845 GO:0009889 GO:0009894 GO:0009987 GO:0010228 GO:0010467 GO:0010556 GO:0010565 GO:0010675 GO:0010896 GO:0010962 GO:0016043 GO:0016070 GO:0016071 GO:0019216 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0031329 GO:0032501 GO:0032502 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0033238 GO:0034641 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050994 GO:0051171 GO:0060255 GO:0061458 GO:0062012 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090207 GO:0090304 GO:0090351 GO:0090615 GO:0140053 GO:1901360 GO:2000112 GO:2001006

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Intron_maturas2 RVT_1

Protein Analysis

171

Amino Acids

19.89

Weight (kDa)

9.3

Isoelectric Point (pI)

48.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30010
fragaria_vesca	FvH4_3g05620 FvH4_3g05620 FvH4_3g05620
malus_domestica	MD05G1284200.v1.1 MD10G1262500.v1.1 MD10G1262600.v1.1
pyrus_communis	pycom05g26330 pycom10g21870
rosa_chinensis	RchiOBHm_Chr5g0014061
rosa_laevigata	RLG00000000981 RLG00000032078
rosa_roxburghii	Rroxscaffold_1G00062550
rosa_rugosa	Rorug05G0015200
rosa_samantha	Rh5AG109300 Rh5BG106000 Rh5BG249100 Rh5CG117800 Rh5DG104800
rosa_wichuraiana	Rw2G053790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	358
AccB1I	GGYRCC	1 cut(s)	358
AccBSI	CCGCTC	1 cut(s)	365
AciI	CCGC	1 cut(s)	363
AclWI	GGATC	1 cut(s)	275
AcsI	RAATTY	2 cut(s)	410, 429
AfaI	GTAC	3 cut(s)	71, 146, 360
AfiI	CCNNNNNNNGG	1 cut(s)	290
AflIII	ACRYGT	1 cut(s)	309
AgsI	TTSAA	2 cut(s)	401, 445
AluBI	AGCT	5 cut(s)	20, 129, 194, 376, 472
AluI	AGCT	5 cut(s)	20, 129, 194, 376, 472
Alw26I	GTCTC	2 cut(s)	47, 318
AlwI	GGATC	1 cut(s)	275
Ama87I	CYCGRG	1 cut(s)	245
AoxI	GGCC	1 cut(s)	174
ApeKI	GCWGC	3 cut(s)	149, 228, 373
ApoI	RAATTY	2 cut(s)	410, 429
Asp700I	GAANNNNTTC	2 cut(s)	193, 294
Asp718I	GGTACC	1 cut(s)	358
AspS9I	GGNCC	1 cut(s)	174
AsuHPI	GGTGA	1 cut(s)	193
AvaI	CYCGRG	1 cut(s)	245
BanI	GGYRCC	1 cut(s)	358
BbsI	GAAGAC	1 cut(s)	408
BbvI	GCAGC	3 cut(s)	136, 240, 385
BccI	CCATC	2 cut(s)	262, 331
BcoDI	GTCTC	2 cut(s)	47, 318
BfaI	CTAG	2 cut(s)	348, 492
BisI	GCNGC	3 cut(s)	150, 229, 374
BlsI	GCNGC	3 cut(s)	151, 230, 375
BmeT110I	CYCGRG	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	174
BmiI	GGNNCC	2 cut(s)	302, 360
BpiI	GAAGAC	1 cut(s)	408
Bpu10I	CCTNAGC	1 cut(s)	473
BsaAI	YACGTR	2 cut(s)	125, 383
BsaI	GGTCTC	1 cut(s)	47
BsaJI	CCNNGG	3 cut(s)	57, 177, 451
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
BseDI	CCNNGG	3 cut(s)	57, 177, 451
BseGI	GGATG	1 cut(s)	273
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseMII	CTCAG	2 cut(s)	209, 220
BseXI	GCAGC	3 cut(s)	136, 240, 385
BsgI	GTGCAG	1 cut(s)	225
BshFI	GGCC	1 cut(s)	176
BshNI	GGYRCC	1 cut(s)	358
BsiHKCI	CYCGRG	1 cut(s)	245
BsiWI	CGTACG	1 cut(s)	144
BslFI	GGGAC	1 cut(s)	285
BslI	CCNNNNNNNGG	1 cut(s)	290
BsmAI	GTCTC	2 cut(s)	47, 318
BsmFI	GGGAC	1 cut(s)	285
BsnI	GGCC	1 cut(s)	176
Bso31I	GGTCTC	1 cut(s)	47
BsoBI	CYCGRG	1 cut(s)	245
Bsp143I	GATC	3 cut(s)	256, 280, 499
Bsp19I	CCATGG	1 cut(s)	57
BspACI	CCGC	1 cut(s)	363
BspANI	GGCC	1 cut(s)	176
BspCNI	CTCAG	2 cut(s)	210, 219
BspHI	TCATGA	1 cut(s)	367
BspLI	GGNNCC	2 cut(s)	302, 360
BspPI	GGATC	1 cut(s)	275
BspT107I	GGYRCC	1 cut(s)	358
BspTNI	GGTCTC	1 cut(s)	47
BsrBI	CCGCTC	1 cut(s)	365
BssECI	CCNNGG	3 cut(s)	57, 177, 451
BssMI	GATC	3 cut(s)	256, 280, 499
BssT1I	CCWWGG	3 cut(s)	57, 177, 451
Bst4CI	ACNGT	1 cut(s)	144
BstBAI	YACGTR	2 cut(s)	125, 383
BstDEI	CTNAG	3 cut(s)	206, 218, 473
BstDSI	CCRYGG	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	273
BstKTI	GATC	3 cut(s)	259, 283, 502
BstMAI	GTCTC	2 cut(s)	47, 318
BstMBI	GATC	3 cut(s)	256, 280, 499
BstNSI	RCATGY	1 cut(s)	313
BstSNI	TACGTA	1 cut(s)	125
BstV1I	GCAGC	3 cut(s)	136, 240, 385
BstV2I	GAAGAC	1 cut(s)	408
BsuRI	GGCC	1 cut(s)	176
BtgI	CCRYGG	1 cut(s)	57
BtsCI	GGATG	1 cut(s)	273
BtsIMutI	CAGTG	1 cut(s)	215
CciI	TCATGA	1 cut(s)	367
Cfr13I	GGNCC	1 cut(s)	174
Csp6I	GTAC	3 cut(s)	70, 145, 359
CviAII	CATG	4 cut(s)	58, 198, 310, 368
CviJI	RGCY	8 cut(s)	20, 62, 129, 137, 176, 194, 376, 472
CviKI_1	RGCY	8 cut(s)	20, 62, 129, 137, 176, 194, 376, 472
CviQI	GTAC	3 cut(s)	70, 145, 359
DdeI	CTNAG	3 cut(s)	206, 218, 473
DpnI	GATC	3 cut(s)	258, 282, 501
DpnII	GATC	3 cut(s)	256, 280, 499
Eco105I	TACGTA	1 cut(s)	125
Eco130I	CCWWGG	3 cut(s)	57, 177, 451
Eco31I	GGTCTC	1 cut(s)	47
Eco88I	CYCGRG	1 cut(s)	245
EcoT14I	CCWWGG	3 cut(s)	57, 177, 451
ErhI	CCWWGG	3 cut(s)	57, 177, 451
FaeI	CATG	4 cut(s)	61, 201, 313, 371
FaqI	GGGAC	1 cut(s)	285
FatI	CATG	4 cut(s)	57, 197, 309, 367
FauI	CCCGC	1 cut(s)	370
Fnu4HI	GCNGC	3 cut(s)	150, 229, 374
FokI	GGATG	1 cut(s)	280
Fsp4HI	GCNGC	3 cut(s)	150, 229, 374
FspBI	CTAG	2 cut(s)	348, 492
GluI	GCNGC	3 cut(s)	150, 229, 374
HaeIII	GGCC	1 cut(s)	176
Hin1II	CATG	4 cut(s)	61, 201, 313, 371
HindIII	AAGCTT	1 cut(s)	470
HinfI	GANTC	1 cut(s)	319
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	1 cut(s)	215
Hpy188I	TCNGA	4 cut(s)	256, 318, 395, 462
Hpy188III	TCNNGA	1 cut(s)	368
Hpy8I	GTNNAC	1 cut(s)	215
HpyAV	CCTTC	1 cut(s)	284
HpyCH4III	ACNGT	1 cut(s)	144
HpyCH4IV	ACGT	2 cut(s)	124, 382
HpyCH4V	TGCA	3 cut(s)	152, 201, 242
HpyF3I	CTNAG	3 cut(s)	206, 218, 473
HpySE526I	ACGT	2 cut(s)	124, 382
Hsp92II	CATG	4 cut(s)	61, 201, 313, 371
KpnI	GGTACC	1 cut(s)	362
Kzo9I	GATC	3 cut(s)	256, 280, 499
LpnPI	CCDG	1 cut(s)	47
Lsp1109I	GCAGC	3 cut(s)	136, 240, 385
MaeI	CTAG	2 cut(s)	348, 492
MaeII	ACGT	2 cut(s)	124, 382
MaeIII	GTNAC	1 cut(s)	383
MalI	GATC	3 cut(s)	258, 282, 501
MbiI	CCGCTC	1 cut(s)	365
MboI	GATC	3 cut(s)	256, 280, 499
MboII	GAAGA	2 cut(s)	413, 491
MluCI	AATT	5 cut(s)	28, 235, 352, 410, 429
MnlI	CCTC	3 cut(s)	213, 258, 315
MroXI	GAANNNNTTC	2 cut(s)	193, 294
NcoI	CCATGG	1 cut(s)	57
NdeII	GATC	3 cut(s)	256, 280, 499
NlaIII	CATG	4 cut(s)	61, 201, 313, 371
NlaIV	GGNNCC	2 cut(s)	302, 360
NmuCI	GTSAC	1 cut(s)	383
NspI	RCATGY	1 cut(s)	313
PagI	TCATGA	1 cut(s)	367
PciI	ACATGT	1 cut(s)	309
PdmI	GAANNNNTTC	2 cut(s)	193, 294
PfeI	GAWTC	1 cut(s)	319
Pfl23II	CGTACG	1 cut(s)	144
PkrI	GCNGC	3 cut(s)	151, 230, 375
Ppu21I	YACGTR	2 cut(s)	125, 383
PscI	ACATGT	1 cut(s)	309
PspLI	CGTACG	1 cut(s)	144
PspN4I	GGNNCC	2 cut(s)	302, 360
PspPI	GGNCC	1 cut(s)	174
RsaI	GTAC	3 cut(s)	71, 146, 360
RsaNI	GTAC	3 cut(s)	70, 145, 359
SatI	GCNGC	3 cut(s)	150, 229, 374
Sau3AI	GATC	3 cut(s)	256, 280, 499
Sau96I	GGNCC	1 cut(s)	174
SnaBI	TACGTA	1 cut(s)	125
Sse9I	AATT	5 cut(s)	28, 235, 352, 410, 429
SsiI	CCGC	1 cut(s)	363
SspMI	CTAG	2 cut(s)	348, 492
StyI	CCWWGG	3 cut(s)	57, 177, 451
TaaI	ACNGT	1 cut(s)	144
TaiI	ACGT	2 cut(s)	127, 385
TaqI	TCGA	1 cut(s)	288
TasI	AATT	5 cut(s)	28, 235, 352, 410, 429
TfiI	GAWTC	1 cut(s)	319
TscAI	CASTG	1 cut(s)	222
TseFI	GTSAC	1 cut(s)	383
TseI	GCWGC	3 cut(s)	149, 228, 373
Tsp45I	GTSAC	1 cut(s)	383
TspDTI	ATGAA	2 cut(s)	53, 186
TspRI	CASTG	1 cut(s)	222
XapI	RAATTY	2 cut(s)	410, 429
XceI	RCATGY	1 cut(s)	313
XmnI	GAANNNNTTC	2 cut(s)	193, 294
XspI	CTAG	2 cut(s)	348, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.