Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0009568

Physical Location & Seq

Genomic Coordinates Reverse (-)

24719475 .. 24721487

Gene Structure 2013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGATTTGCCGCGAAATAGTGAACTACACTCTCGCGTTCCTCTCACTGTGCCCTCGTAGCCATAAAAGCAGAAACAAGAAAGCAGAAAAAAGCAGAAAGCAGAAAGCAGAAATTACAAAAATGGCGACTCTCTCACTCTCCTCCACGTTACAACGGAATTTCTCTCTCTACGGCATCAGCAGCAGCAGCACTACCGAATCCAAATTCTCCGCCTTTCAACCGAGGCCGGCCAAGCTCTCTTGTCTTCTTTTGAGATCACTCCACCGCAACCCTCTCAGAGTTTCGATTGGCGGAAAGAAGGAATTCATGGCGATGAAGGGTAAGAGGAGGGGATCGGGTGCGATGTGTTACGCTGCACCTCTTTCTGTCAACAGCCTCCAGTGGATCTCCACCATTTCTTCTGCGGTTCTGTTGCTTGTAAAAGGGACTGCTGTTCAGAAATCATTTCTTGTTCCCTTATTTCTCCTACAAGCGCCAGCTACCGTCGTCTCATGGATTAAGGGTGAATATGGTATCTGGGCTGCCTTCCTAGCCCTTCTTGTTCGTCTCTTCTTCTTTATTCCTGCGGAACTTGAGTTGCCATTGACAGCATTCCTCCTGGTTATTGTGGCTCCTTACCAAGTTCTGAAACTAAGGGGAAGACAAGAAGGTGCTATTATTTCACTGGTCATTGCAGCATATTTGGCTTTCCAGCACTTTTCACGAATAGGAAGCTTGGAGAGATCATTTGACCGAGGTTCAATTATTGCTACCTTAGCCATCATTTCTATCACTGCTTTGTCATGCTTGTTCCTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0007154 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009605 GO:0009628 GO:0009631 GO:0009706 GO:0009719 GO:0009725 GO:0009737 GO:0009941 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0016020 GO:0016021 GO:0019866 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031352 GO:0031353 GO:0031356 GO:0031357 GO:0031668 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0033554 GO:0033993 GO:0034357 GO:0042170 GO:0042221 GO:0042631 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055035 GO:0070417 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0097305 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WCOR413

Protein Analysis

267

Amino Acids

29.41

Weight (kDa)

10.43

Isoelectric Point (pI)

43.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WCOR413	PF05562	103 - 256	4.5e-50	Cold acclimation protein WCOR413

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29390 AT1G29390 AT1G29395
fragaria_vesca	FvH4_3g06340 FvH4_3g06340
malus_domestica	MD05G1291300.v1.1 MD10G1267000.v1.1 MD13G1187800.v1.1
prunus_persica	Prupe.4G074300_v2.0.a1 Prupe.4G074300_v2.0.a1
pyrus_communis	pycom05g26780 pycom10g22320
rosa_chinensis	RchiOBHm_Chr5g0012971
rosa_laevigata	RLG00000031973
rosa_multiflora	Rmu_sc0010837.1_g000002
rosa_roxburghii	Rroxscaffold_1G00063610
rosa_rugosa	Rorug05G0005600
rosa_samantha	Rh5AG100000 Rh5BG096700 Rh5CG109000 Rh5DG095500
rosa_wichuraiana	Rw5G008740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	12, 35
AciI	CCGC	6 cut(s)	10, 210, 265, 291, 404, 566
AclWI	GGATC	2 cut(s)	340, 392
AcoI	YGGCCR	1 cut(s)	228
AcsI	RAATTY	3 cut(s)	157, 203, 302
AgsI	TTSAA	2 cut(s)	218, 741
AjnI	CCWGG	1 cut(s)	597
AluBI	AGCT	3 cut(s)	235, 479, 714
AluI	AGCT	3 cut(s)	235, 479, 714
Alw26I	GTCTC	2 cut(s)	493, 551
AlwI	GGATC	2 cut(s)	340, 392
AoxI	GGCC	2 cut(s)	224, 228
ApeKI	GCWGC	6 cut(s)	180, 183, 186, 353, 521, 674
ApoI	RAATTY	3 cut(s)	157, 203, 302
Asp700I	GAANNNNTTC	1 cut(s)	302
AspLEI	GCGC	1 cut(s)	475
AsuHPI	GGTGA	1 cut(s)	515
BaeGI	GKGCMC	1 cut(s)	53
BbsI	GAAGAC	2 cut(s)	236, 646
BbvI	GCAGC	6 cut(s)	192, 195, 198, 340, 508, 686
BccI	CCATC	1 cut(s)	767
BceAI	ACGGC	1 cut(s)	187
BciT130I	CCWGG	1 cut(s)	599
BcoDI	GTCTC	2 cut(s)	493, 551
BfaI	CTAG	1 cut(s)	530
BfoI	RGCGCY	1 cut(s)	476
BisI	GCNGC	7 cut(s)	10, 181, 184, 187, 354, 522, 675
BlsI	GCNGC	7 cut(s)	11, 182, 185, 188, 355, 523, 676
Bme1390I	CCNGG	1 cut(s)	599
BmiI	GGNNCC	1 cut(s)	612
BmrFI	CCNGG	1 cut(s)	599
BmsI	GCATC	1 cut(s)	183
BpiI	GAAGAC	2 cut(s)	236, 646
BpmI	CTGGAG	1 cut(s)	362
Bpu10I	CCTNAGC	1 cut(s)	754
BpuEI	CTTGAG	1 cut(s)	593
BsaJI	CCNNGG	2 cut(s)	221, 733
Bse118I	RCCGGY	1 cut(s)	226
Bse1I	ACTGG	2 cut(s)	379, 669
Bse3DI	GCAATG	1 cut(s)	669
BseBI	CCWGG	1 cut(s)	599
BseDI	CCNNGG	2 cut(s)	221, 733
BseMI	GCAATG	1 cut(s)	669
BseMII	CTCAG	1 cut(s)	289
BseNI	ACTGG	2 cut(s)	379, 669
BseRI	GAGGAG	2 cut(s)	130, 340
BseSI	GKGCMC	1 cut(s)	53
BseXI	GCAGC	6 cut(s)	192, 195, 198, 340, 508, 686
BsgI	GTGCAG	1 cut(s)	339
Bsh1236I	CGCG	2 cut(s)	12, 35
BshFI	GGCC	2 cut(s)	226, 230
BsiSI	CCGG	1 cut(s)	227
BslFI	GGGAC	1 cut(s)	439
BsmAI	GTCTC	2 cut(s)	493, 551
BsmBI	CGTCTC	2 cut(s)	493, 551
BsmFI	GGGAC	1 cut(s)	439
BsmI	GAATGC	1 cut(s)	590
BsnI	GGCC	2 cut(s)	226, 230
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp143I	GATC	4 cut(s)	254, 332, 384, 722
BspACI	CCGC	6 cut(s)	10, 210, 265, 291, 404, 566
BspANI	GGCC	2 cut(s)	226, 230
BspCNI	CTCAG	1 cut(s)	288
BspFNI	CGCG	2 cut(s)	12, 35
BspLI	GGNNCC	1 cut(s)	612
BspPI	GGATC	2 cut(s)	340, 392
BsrDI	GCAATG	1 cut(s)	669
BsrFI	RCCGGY	1 cut(s)	226
BsrI	ACTGG	2 cut(s)	379, 669
BssAI	RCCGGY	1 cut(s)	226
BssECI	CCNNGG	2 cut(s)	221, 733
BssMI	GATC	4 cut(s)	254, 332, 384, 722
Bst2UI	CCWGG	1 cut(s)	599
Bst4CI	ACNGT	2 cut(s)	48, 484
Bst6I	CTCTTC	1 cut(s)	554
BstC8I	GCNNGC	2 cut(s)	228, 477
BstDEI	CTNAG	3 cut(s)	275, 632, 754
BstFNI	CGCG	2 cut(s)	12, 35
BstH2I	RGCGCY	1 cut(s)	476
BstHHI	GCGC	1 cut(s)	475
BstKTI	GATC	4 cut(s)	257, 335, 387, 725
BstMAI	GTCTC	2 cut(s)	493, 551
BstMBI	GATC	4 cut(s)	254, 332, 384, 722
BstMWI	GCNNNNNNNGC	8 cut(s)	57, 66, 180, 186, 232, 530, 683, 755
BstNI	CCWGG	1 cut(s)	599
BstSCI	CCNGG	1 cut(s)	597
BstSLI	GKGCMC	1 cut(s)	53
BstUI	CGCG	2 cut(s)	12, 35
BstV1I	GCAGC	6 cut(s)	192, 195, 198, 340, 508, 686
BstV2I	GAAGAC	2 cut(s)	236, 646
BstX2I	RGATCY	1 cut(s)	384
BstYI	RGATCY	1 cut(s)	384
BsuRI	GGCC	2 cut(s)	226, 230
BtgZI	GCGATG	2 cut(s)	326, 356
BtsI	GCAGTG	1 cut(s)	771
BtsIMutI	CAGTG	4 cut(s)	44, 386, 662, 771
Cac8I	GCNNGC	2 cut(s)	228, 477
CfoI	GCGC	1 cut(s)	475
Cfr10I	RCCGGY	1 cut(s)	226
CviAII	CATG	3 cut(s)	307, 492, 783
DdeI	CTNAG	3 cut(s)	275, 632, 754
DpnI	GATC	4 cut(s)	256, 334, 386, 724
DpnII	GATC	4 cut(s)	254, 332, 384, 722
EaeI	YGGCCR	1 cut(s)	228
Eam1104I	CTCTTC	1 cut(s)	554
EarI	CTCTTC	1 cut(s)	554
EciI	GGCGGA	2 cut(s)	199, 306
EcoRI	GAATTC	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	597
Esp3I	CGTCTC	2 cut(s)	493, 551
FaeI	CATG	3 cut(s)	310, 495, 786
FaiI	YATR	6 cut(s)	63, 308, 493, 510, 679, 784
FaqI	GGGAC	1 cut(s)	439
FatI	CATG	3 cut(s)	306, 491, 782
Fnu4HI	GCNGC	7 cut(s)	10, 181, 184, 187, 354, 522, 675
FseI	GGCCGGCC	1 cut(s)	230
Fsp4HI	GCNGC	7 cut(s)	10, 181, 184, 187, 354, 522, 675
FspBI	CTAG	1 cut(s)	530
GlaI	GCGC	1 cut(s)	474
GluI	GCNGC	7 cut(s)	10, 181, 184, 187, 354, 522, 675
GsuI	CTGGAG	1 cut(s)	362
HaeII	RGCGCY	1 cut(s)	476
HaeIII	GGCC	2 cut(s)	226, 230
HapII	CCGG	1 cut(s)	227
HhaI	GCGC	1 cut(s)	475
Hin1II	CATG	3 cut(s)	310, 495, 786
Hin6I	GCGC	1 cut(s)	473
HinP1I	GCGC	1 cut(s)	473
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HindIII	AAGCTT	1 cut(s)	712
HinfI	GANTC	2 cut(s)	127, 197
HpaII	CCGG	1 cut(s)	227
HphI	GGTGA	1 cut(s)	515
Hpy166II	GTNNAC	2 cut(s)	22, 370
Hpy188I	TCNGA	4 cut(s)	278, 438, 627, 800
Hpy188III	TCNNGA	1 cut(s)	702
Hpy8I	GTNNAC	2 cut(s)	22, 370
Hpy99I	CGWCG	1 cut(s)	488
HpyAV	CCTTC	5 cut(s)	292, 310, 535, 545, 641
HpyCH4III	ACNGT	2 cut(s)	48, 484
HpyCH4IV	ACGT	1 cut(s)	146
HpyCH4V	TGCA	2 cut(s)	356, 674
HpyF10VI	GCNNNNNNNGC	8 cut(s)	57, 66, 180, 186, 232, 530, 683, 755
HpyF3I	CTNAG	3 cut(s)	275, 632, 754
HpySE526I	ACGT	1 cut(s)	146
Hsp92II	CATG	3 cut(s)	310, 495, 786
HspAI	GCGC	1 cut(s)	473
KroI	GCCGGC	1 cut(s)	226
KroNI	GCCGGC	1 cut(s)	228
Kzo9I	GATC	4 cut(s)	254, 332, 384, 722
LmnI	GCTCC	1 cut(s)	616
LpnPI	CCDG	9 cut(s)	240, 392, 489, 502, 576, 584, 611, 650, 704
Lsp1109I	GCAGC	6 cut(s)	192, 195, 198, 340, 508, 686
LweI	GCATC	1 cut(s)	183
MaeI	CTAG	1 cut(s)	530
MaeII	ACGT	1 cut(s)	146
MaeIII	GTNAC	2 cut(s)	147, 347
MalI	GATC	4 cut(s)	256, 334, 386, 724
MboI	GATC	4 cut(s)	254, 332, 384, 722
MboII	GAAGA	5 cut(s)	236, 390, 541, 544, 651
MflI	RGATCY	1 cut(s)	384
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	5 cut(s)	111, 157, 203, 302, 741
MlyI	GAGTC	1 cut(s)	121
MroNI	GCCGGC	1 cut(s)	226
MroXI	GAANNNNTTC	1 cut(s)	302
MseI	TTAA	1 cut(s)	498
MslI	CAYNNNNRTG	1 cut(s)	311
MspI	CCGG	1 cut(s)	227
MspR9I	CCNGG	1 cut(s)	599
Mva1269I	GAATGC	1 cut(s)	590
MvaI	CCWGG	1 cut(s)	599
MvnI	CGCG	2 cut(s)	12, 35
MwoI	GCNNNNNNNGC	8 cut(s)	57, 66, 180, 186, 232, 530, 683, 755
NaeI	GCCGGC	1 cut(s)	228
NdeII	GATC	4 cut(s)	254, 332, 384, 722
NgoMIV	GCCGGC	1 cut(s)	226
NlaIII	CATG	3 cut(s)	310, 495, 786
NlaIV	GGNNCC	1 cut(s)	612
PctI	GAATGC	1 cut(s)	590
PdiI	GCCGGC	1 cut(s)	228
PdmI	GAANNNNTTC	1 cut(s)	302
PfeI	GAWTC	1 cut(s)	197
PkrI	GCNGC	7 cut(s)	11, 182, 185, 188, 355, 523, 676
PleI	GAGTC	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	121
Psp6I	CCWGG	1 cut(s)	597
PspGI	CCWGG	1 cut(s)	597
PspN4I	GGNNCC	1 cut(s)	612
PsuI	RGATCY	1 cut(s)	384
RigI	GGCCGGCC	1 cut(s)	230
RseI	CAYNNNNRTG	1 cut(s)	311
SaqAI	TTAA	1 cut(s)	498
SatI	GCNGC	7 cut(s)	10, 181, 184, 187, 354, 522, 675
Sau3AI	GATC	4 cut(s)	254, 332, 384, 722
SchI	GAGTC	1 cut(s)	121
ScrFI	CCNGG	1 cut(s)	599
SduI	GDGCHC	1 cut(s)	53
SetI	ASST	8 cut(s)	149, 237, 361, 481, 652, 716, 739, 755
SfaNI	GCATC	1 cut(s)	183
SmiMI	CAYNNNNRTG	1 cut(s)	311
SmlI	CTYRAG	1 cut(s)	572
SmoI	CTYRAG	1 cut(s)	572
Sse9I	AATT	5 cut(s)	111, 157, 203, 302, 741
SsiI	CCGC	6 cut(s)	10, 210, 265, 291, 404, 566
SspMI	CTAG	1 cut(s)	530
StyD4I	CCNGG	1 cut(s)	597
TaaI	ACNGT	2 cut(s)	48, 484
TaiI	ACGT	1 cut(s)	149
TaqI	TCGA	1 cut(s)	284
TaqII	GACCGA	1 cut(s)	747
TasI	AATT	5 cut(s)	111, 157, 203, 302, 741
TauI	GCSGC	1 cut(s)	12
TfiI	GAWTC	1 cut(s)	197
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TscAI	CASTG	4 cut(s)	51, 386, 669, 778
TseI	GCWGC	6 cut(s)	180, 183, 186, 353, 521, 674
TspDTI	ATGAA	2 cut(s)	295, 329
TspGWI	ACGGA	1 cut(s)	169
TspRI	CASTG	4 cut(s)	51, 386, 669, 778
XapI	RAATTY	3 cut(s)	157, 203, 302
XmnI	GAANNNNTTC	1 cut(s)	302
XspI	CTAG	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.