pycom10g22970

alpha,alpha-trehalose-phosphate synthase UDP-forming

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
25239247 .. 25241049
1803 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g22970.1

Sequence Viewer

Length: 1803 bp
ATGATGTCCAAATCGTATACCAATCTTTTCGATCTTGCTTCCGGAAACTTTCCGGTAATGGGTCGCGAAAGACGGCGGCTTCCGCGTGTAATGACCGTCGCCGGGGTTATATCTGAGCTTGATGATGATCAAGCGGGTAGTGTATCGTCGGATGTTCCGTCGTCGATCATTCAGGACCGGATAATTATTGTTGCCAATCAGCTCCCTGTGAAAGCTAAGCGGAGACCGGATAACAAAGGATGGAGCTTTAGTTGGGATGAGGACTCATTGGTATTGCAGTTGAAGGACGGTCTACCGGAAGATATGGAGGTTTTGTATGTAGGTTCTTTGAGCGTCGAAGTGGATACCAATGAACAGGACGATGTATCCGCACTCCTGTTGGATAGATTCAAGTGCGTTCCGGCCTTTTTGCCGCCCGACATTTTGTCCAAGTTCTATCATGGGTTTTGCAAGCAGCATTTGTGGCCTCTGTTTCATTACATGCTTCCTTTCTCAGCAACTCATGGGGGCCGGTTCGATCGGTCTTTGTGGGAGGCGTATGTGGCCGCAAATAAGATTTTCTCGCAAAGGGTGATCGAGGTGATAAATCCGGAGGATGACTATGTGTGGATTCATGATTACCATCTAATGGTGCTGCCTACCTTCTTGAGGAGGATGTTCAATAGATTGAGAATGGGGTTTTTTCTCCATAGCCCATTCCCTTCGTCCGAAATATATAGGACTCTACCAGTTAGGGAAGAGATTTTAAAGGCACTTCTAAATGCGGACCTTATTGGTTTCCACACATTTGATTACGCTCGGCATTTCTTGTCTTGTTGTAGTCGGATGTTGGGTTTGGAGTATCAGTCGAAGCGGGGTTATATTGGGTTGGATTATTTCGGAAGGACAGTTGGGATAAAGATCATGCCTGTTGGGATTCACATGGGGCAGATTGAGTCAGTGTTGAAGCTTGCGGATAAGGAATGGAGGGTAGGAGAACTCAAACAACAGTTTGAAGGAAAGACGGTGCTACTTGGTGTTGATGATATGGACATCTTTAAAGGTGTCAACTTGAAGCTCTTGGCAATGGAACAGATGCTGAAGCAGCATCCGAAGTGGCAGGGGAAAGCGGTTCTGGTTCAGATAGCGAACCCTGCTAGGGGAAGAGGGAAAGATCTTGAGGAAACACAGGCTGAAATACAGGCAAGCATCAAAAGAATTAATGAAAATTTTGGTCGGACTGGATATGAACCTATTGTGTTCATTGATAGACCAGTTTCTCTTAGTGAAAGAGTTGCATATTACACAATTGCGGAGTGTGTGGTAGTCACAGCTGTGAGAGATGGGATGAATCTTATTCCATACGAGTATATTGTGTGCAGGCAAGGAAACTCTGTATCAGATTCTAATTCAGAACACAGTGGGCCGAAGAAGAGCATGCTCGTAGTATCAGAGTTTATTGGATGTTCCCCTTCACTAAGTGGTGCAATTCGGGTTAACCCATGGAATATTGAATCAACGGCGGAGGCAATGAACGAGGCAATTTCAATGGTTGAACCCGAGAAGCAGTTGCGGCATGAGAAACATTATAGGTATGTTAGTACACATGATGTGGCATACTGGTCGCGAAGTGTTTTCCAAGATATGGAGAGAACTTGCAAAGAACATTTCAGAAGGCGTTGCTGGGGTATTGGTTTGGGCTTCGGCTTCAGGGTTATAGCACTTGATCCTAACTTCAGAAAGCTGACTATTGATCGCATCGTTTCTGCTTACTTGATCGATCTAAAAATAGGGCGATTCTGTTGGATTATGATGGCCCTGTGA

Protein Analysis

601

Amino Acids

68.82

Weight (kDa)

7.25

Isoelectric Point (pI)

45.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_20 PF00982 60 - 543 1.1e-182 Glycosyltransferase family 20
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 628, 1624
AccI GTMKAC 2 cut(s) 17, 292
AccII CGCG 3 cut(s) 66, 85, 1606
AccIII TCCGGA 2 cut(s) 41, 589
AclWI GGATC 1 cut(s) 1700
AcoI YGGCCR 1 cut(s) 543
AcsI RAATTY 1 cut(s) 1207
AcuI CTGAAG 3 cut(s) 1100, 1672, 1699
AdeI CACNNNGTG 1 cut(s) 1460
AfaI GTAC 1 cut(s) 1582
AfiI CCNNNNNNNGG 7 cut(s) 59, 102, 628, 648, 1138, 1139, 1624
AgsI TTSAA 9 cut(s) 283, 391, 661, 946, 995, 1054, 1493, 1527, 1535
AhdI GACNNNNNGTC 1 cut(s) 424
AleI CACNNNNGTG 1 cut(s) 1313
AluBI AGCT 8 cut(s) 118, 202, 215, 246, 949, 1057, 1313, 1723
AluI AGCT 8 cut(s) 118, 202, 215, 246, 949, 1057, 1313, 1723
Alw26I GTCTC 1 cut(s) 217
AlwI GGATC 1 cut(s) 1700
AlwNI CAGNNNCTG 1 cut(s) 1078
Ama87I CYCGRG 1 cut(s) 1538
Aor13HI TCCGGA 2 cut(s) 41, 589
AoxI GGCC 6 cut(s) 402, 464, 508, 543, 1403, 1794
ApeKI GCWGC 3 cut(s) 454, 634, 1084
ApoI RAATTY 1 cut(s) 1207
AseI ATTAAT 1 cut(s) 1200
AspS9I GGNCC 5 cut(s) 175, 508, 766, 1403, 1795
AsuC2I CCSGG 1 cut(s) 103
AsuHPI GGTGA 2 cut(s) 583, 592
AvaI CYCGRG 1 cut(s) 1538
AvaII GGWCC 2 cut(s) 175, 766
BbvI GCAGC 3 cut(s) 466, 621, 1096
BccI CCATC 4 cut(s) 234, 630, 1316, 1786
BceAI ACGGC 2 cut(s) 89, 1515
BcgI CGANNNNNNTGC 2 cut(s) 1584, 1618
BciVI GTATCC 2 cut(s) 337, 376
BclI TGATCA 1 cut(s) 127
BcnI CCSGG 1 cut(s) 103
BcoDI GTCTC 1 cut(s) 217
BfaI CTAG 1 cut(s) 1137
BfuI GTATCC 2 cut(s) 337, 376
BglII AGATCT 1 cut(s) 1153
BisI GCNGC 7 cut(s) 77, 413, 455, 546, 635, 1085, 1553
BlpI GCTNAGC 1 cut(s) 216
BlsI GCNGC 7 cut(s) 78, 414, 456, 547, 636, 1086, 1554
Bme1390I CCNGG 1 cut(s) 103
Bme18I GGWCC 2 cut(s) 175, 766
BmeRI GACNNNNNGTC 1 cut(s) 424
BmeT110I CYCGRG 1 cut(s) 1538
BmgT120I GGNCC 5 cut(s) 175, 508, 766, 1403, 1795
BmiI GGNNCC 1 cut(s) 509
BmrFI CCNGG 1 cut(s) 103
BmsI GCATC 4 cut(s) 1065, 1096, 1197, 1746
Bpu1102I GCTNAGC 1 cut(s) 216
BpuEI CTTGAG 2 cut(s) 667, 1178
BpuMI CCSGG 1 cut(s) 103
Bsa29I ATCGAT 1 cut(s) 1758
BsaBI GATNNNNATC 3 cut(s) 126, 621, 899
BsaI GGTCTC 1 cut(s) 217
BsaJI CCNNGG 2 cut(s) 102, 1481
BsaWI WCCGGW 6 cut(s) 41, 52, 177, 226, 295, 589
BsaXI ACNNNNNCTCC 6 cut(s) 235, 265, 299, 329, 830, 860
Bsc4I CCNNNNNNNGG 7 cut(s) 59, 102, 628, 648, 1138, 1139, 1624
Bse118I RCCGGY 1 cut(s) 510
Bse1I ACTGG 4 cut(s) 728, 1225, 1253, 1604
Bse3DI GCAATG 2 cut(s) 1071, 1515
Bse8I GATNNNNATC 3 cut(s) 126, 621, 899
BseAI TCCGGA 2 cut(s) 41, 589
BseCI ATCGAT 1 cut(s) 1758
BseDI CCNNGG 2 cut(s) 102, 1481
BseGI GGATG 9 cut(s) 157, 245, 262, 601, 660, 831, 1087, 1332, 1448
BseJI GATNNNNATC 3 cut(s) 126, 621, 899
BseLI CCNNNNNNNGG 7 cut(s) 59, 102, 628, 648, 1138, 1139, 1624
BseMI GCAATG 2 cut(s) 1071, 1515
BseMII CTCAG 2 cut(s) 105, 507
BseNI ACTGG 4 cut(s) 728, 1225, 1253, 1604
BseRI GAGGAG 1 cut(s) 664
BseXI GCAGC 3 cut(s) 466, 621, 1096
BseYI CCCAGC 1 cut(s) 1662
BsgI GTGCAG 1 cut(s) 1378
Bsh1236I CGCG 3 cut(s) 66, 85, 1606
Bsh1285I CGRYCG 1 cut(s) 520
BshFI GGCC 6 cut(s) 404, 466, 510, 545, 1405, 1796
BshVI ATCGAT 1 cut(s) 1758
BsiEI CGRYCG 1 cut(s) 520
BsiHKCI CYCGRG 1 cut(s) 1538
BsiSI CCGG 9 cut(s) 42, 53, 102, 178, 227, 296, 401, 511, 590
BslI CCNNNNNNNGG 7 cut(s) 59, 102, 628, 648, 1138, 1139, 1624
BsmAI GTCTC 1 cut(s) 217
BsnI GGCC 6 cut(s) 404, 466, 510, 545, 1405, 1796
Bso31I GGTCTC 1 cut(s) 217
BsoBI CYCGRG 1 cut(s) 1538
Bsp13I TCCGGA 2 cut(s) 41, 589
Bsp1720I GCTNAGC 1 cut(s) 216
Bsp19I CCATGG 1 cut(s) 1481
Bsp68I TCGCGA 2 cut(s) 66, 1606
BspANI GGCC 6 cut(s) 404, 466, 510, 545, 1405, 1796
BspCNI CTCAG 2 cut(s) 106, 506
BspDI ATCGAT 1 cut(s) 1758
BspEI TCCGGA 2 cut(s) 41, 589
BspFNI CGCG 3 cut(s) 66, 85, 1606
BspHI TCATGA 1 cut(s) 613
BspLI GGNNCC 1 cut(s) 509
BspPI GGATC 1 cut(s) 1700
BspQI GCTCTTC 1 cut(s) 1406
BspTNI GGTCTC 1 cut(s) 217
BsrDI GCAATG 2 cut(s) 1071, 1515
BsrFI RCCGGY 1 cut(s) 510
BsrI ACTGG 4 cut(s) 728, 1225, 1253, 1604
BssAI RCCGGY 1 cut(s) 510
BssECI CCNNGG 2 cut(s) 102, 1481
BssNAI GTATAC 1 cut(s) 18
BssT1I CCWWGG 1 cut(s) 1481
Bst1107I GTATAC 1 cut(s) 18
Bst4CI ACNGT 6 cut(s) 97, 290, 889, 990, 1006, 1400
Bst6I CTCTTC 3 cut(s) 732, 1138, 1406
BstC8I GCNNGC 5 cut(s) 452, 951, 1186, 1361, 1418
BstDEI CTNAG 5 cut(s) 114, 216, 493, 1262, 1457
BstDSI CCRYGG 1 cut(s) 1481
BstENI CCTNNNNNAGG 1 cut(s) 646
BstF5I GGATG 9 cut(s) 157, 245, 262, 601, 660, 831, 1087, 1332, 1448
BstFNI CGCG 3 cut(s) 66, 85, 1606
BstMAI GTCTC 1 cut(s) 217
BstMCI CGRYCG 1 cut(s) 520
BstMWI GCNNNNNNNGC 6 cut(s) 82, 463, 542, 1084, 1133, 1552
BstNSI RCATGY 2 cut(s) 484, 1420
BstSCI CCNGG 1 cut(s) 101
BstUI CGCG 3 cut(s) 66, 85, 1606
BstV1I GCAGC 3 cut(s) 466, 621, 1096
BstX2I RGATCY 1 cut(s) 1153
BstYI RGATCY 1 cut(s) 1153
BstZ17I GTATAC 1 cut(s) 18
Bsu15I ATCGAT 1 cut(s) 1758
BsuI GTATCC 2 cut(s) 337, 376
BsuRI GGCC 6 cut(s) 404, 466, 510, 545, 1405, 1796
BsuTUI ATCGAT 1 cut(s) 1758
BtgI CCRYGG 1 cut(s) 1481
BtsCI GGATG 9 cut(s) 157, 245, 262, 601, 660, 831, 1087, 1332, 1448
BtsIMutI CAGTG 2 cut(s) 945, 1405
BtuMI TCGCGA 2 cut(s) 66, 1606
Cac8I GCNNGC 5 cut(s) 452, 951, 1186, 1361, 1418
CaiI CAGNNNCTG 1 cut(s) 1078
CciI TCATGA 1 cut(s) 613
Cfr10I RCCGGY 1 cut(s) 510
Cfr13I GGNCC 5 cut(s) 175, 508, 766, 1403, 1795
ClaI ATCGAT 1 cut(s) 1758
CseI GACGC 1 cut(s) 322
Csp6I GTAC 1 cut(s) 1581
CviQI GTAC 1 cut(s) 1581
DdeI CTNAG 5 cut(s) 114, 216, 493, 1262, 1457
DraI TTTAAA 2 cut(s) 747, 1039
DraIII CACNNNGTG 1 cut(s) 1460
DriI GACNNNNNGTC 1 cut(s) 424
EaeI YGGCCR 1 cut(s) 543
Eam1104I CTCTTC 3 cut(s) 732, 1138, 1406
Eam1105I GACNNNNNGTC 1 cut(s) 424
EarI CTCTTC 3 cut(s) 732, 1138, 1406
EciI GGCGGA 1 cut(s) 1517
Eco130I CCWWGG 1 cut(s) 1481
Eco31I GGTCTC 1 cut(s) 217
Eco47I GGWCC 2 cut(s) 175, 766
Eco57I CTGAAG 3 cut(s) 1100, 1672, 1699
Eco88I CYCGRG 1 cut(s) 1538
EcoNI CCTNNNNNAGG 1 cut(s) 646
EcoT14I CCWWGG 1 cut(s) 1481
ErhI CCWWGG 1 cut(s) 1481
FauI CCCGC 2 cut(s) 127, 846
FbaI TGATCA 1 cut(s) 127
FblI GTMKAC 2 cut(s) 17, 292
Fnu4HI GCNGC 7 cut(s) 77, 413, 455, 546, 635, 1085, 1553
FokI GGATG 9 cut(s) 164, 252, 269, 608, 667, 838, 1074, 1339, 1455
Fsp4HI GCNGC 7 cut(s) 77, 413, 455, 546, 635, 1085, 1553
FspBI CTAG 1 cut(s) 1137
GluI GCNGC 7 cut(s) 77, 413, 455, 546, 635, 1085, 1553
GsaI CCCAGC 1 cut(s) 1666
HaeIII GGCC 6 cut(s) 404, 466, 510, 545, 1405, 1796
HapII CCGG 9 cut(s) 42, 53, 102, 178, 227, 296, 401, 511, 590
HgaI GACGC 1 cut(s) 322
HincII GTYRAC 2 cut(s) 1048, 1477
HindII GTYRAC 2 cut(s) 1048, 1477
HindIII AAGCTT 1 cut(s) 947
HpaI GTTAAC 1 cut(s) 1477
HpaII CCGG 9 cut(s) 42, 53, 102, 178, 227, 296, 401, 511, 590
HphI GGTGA 2 cut(s) 583, 592
Hpy166II GTNNAC 5 cut(s) 18, 293, 1048, 1477, 1583
Hpy188III TCNNGA 8 cut(s) 42, 65, 173, 590, 614, 646, 1157, 1605
Hpy8I GTNNAC 5 cut(s) 18, 293, 1048, 1477, 1583
Hpy99I CGWCG 5 cut(s) 101, 151, 163, 166, 338
HpyAV CCTTC 7 cut(s) 277, 652, 711, 876, 989, 1461, 1647
HpyCH4III ACNGT 6 cut(s) 97, 290, 889, 990, 1006, 1400
HpyCH4V TGCA 6 cut(s) 277, 450, 1277, 1359, 1466, 1638
HpyF10VI GCNNNNNNNGC 6 cut(s) 82, 463, 542, 1084, 1133, 1552
HpyF3I CTNAG 5 cut(s) 114, 216, 493, 1262, 1457
Kpn2I TCCGGA 2 cut(s) 41, 589
Ksp22I TGATCA 1 cut(s) 127
KspAI GTTAAC 1 cut(s) 1477
LguI GCTCTTC 1 cut(s) 1406
LmnI GCTCC 2 cut(s) 207, 243
Lsp1109I GCAGC 3 cut(s) 466, 621, 1096
LweI GCATC 4 cut(s) 1065, 1096, 1197, 1746
MaeI CTAG 1 cut(s) 1137
MaeIII GTNAC 1 cut(s) 1306
MboII GAAGA 5 cut(s) 311, 749, 1155, 1420, 1423
MfeI CAATTG 1 cut(s) 1287
MflI RGATCY 1 cut(s) 1153
MluCI AATT 7 cut(s) 183, 1197, 1207, 1287, 1387, 1467, 1521
MlyI GAGTC 3 cut(s) 257, 715, 944
MmeI TCCRAC 6 cut(s) 129, 360, 803, 849, 1196, 1763
MroI TCCGGA 2 cut(s) 41, 589
MseI TTAA 4 cut(s) 746, 1038, 1200, 1476
MslI CAYNNNNRTG 1 cut(s) 1313
MspA1I CMGCKG 1 cut(s) 1313
MspI CCGG 9 cut(s) 42, 53, 102, 178, 227, 296, 401, 511, 590
MspR9I CCNGG 1 cut(s) 103
MunI CAATTG 1 cut(s) 1287
MvnI CGCG 3 cut(s) 66, 85, 1606
MwoI GCNNNNNNNGC 6 cut(s) 82, 463, 542, 1084, 1133, 1552
NciI CCSGG 1 cut(s) 103
NcoI CCATGG 1 cut(s) 1481
NlaIV GGNNCC 1 cut(s) 509
NmeAIII GCCGAG 1 cut(s) 778
NmuCI GTSAC 1 cut(s) 1306
NruI TCGCGA 2 cut(s) 66, 1606
NspI RCATGY 2 cut(s) 484, 1420
OliI CACNNNNGTG 1 cut(s) 1313
PaeI GCATGC 1 cut(s) 1420
PagI TCATGA 1 cut(s) 613
PciSI GCTCTTC 1 cut(s) 1406
PcsI WCGNNNNNNNCGW 1 cut(s) 155
PfeI GAWTC 7 cut(s) 387, 610, 916, 1330, 1382, 1493, 1776
PflMI CCANNNNNTGG 2 cut(s) 628, 1624
PkrI GCNGC 7 cut(s) 78, 414, 456, 547, 636, 1086, 1554
Ple19I CGATCG 1 cut(s) 520
PleI GAGTC 3 cut(s) 257, 715, 943
PpsI GAGTC 3 cut(s) 257, 715, 943
PshBI ATTAAT 1 cut(s) 1200
PspFI CCCAGC 1 cut(s) 1662
PspN4I GGNNCC 1 cut(s) 509
PspPI GGNCC 5 cut(s) 175, 508, 766, 1403, 1795
PstNI CAGNNNCTG 1 cut(s) 1078
PsuI RGATCY 1 cut(s) 1153
PvuI CGATCG 1 cut(s) 520
PvuII CAGCTG 1 cut(s) 1313
RruI TCGCGA 2 cut(s) 66, 1606
RsaI GTAC 1 cut(s) 1582
RsaNI GTAC 1 cut(s) 1581
RseI CAYNNNNRTG 1 cut(s) 1313
SapI GCTCTTC 1 cut(s) 1406
SaqAI TTAA 4 cut(s) 746, 1038, 1200, 1476
SatI GCNGC 7 cut(s) 77, 413, 455, 546, 635, 1085, 1553
Sau96I GGNCC 5 cut(s) 175, 508, 766, 1403, 1795
SchI GAGTC 3 cut(s) 257, 715, 944
ScrFI CCNGG 1 cut(s) 103
SfaNI GCATC 4 cut(s) 1065, 1096, 1197, 1746
SinI GGWCC 2 cut(s) 175, 766
SmiMI CAYNNNNRTG 1 cut(s) 1313
SmlI CTYRAG 2 cut(s) 646, 1157
SmoI CTYRAG 2 cut(s) 646, 1157
SphI GCATGC 1 cut(s) 1420
Sse9I AATT 7 cut(s) 183, 1197, 1207, 1287, 1387, 1467, 1521
SspI AATATT 1 cut(s) 1489
SspMI CTAG 1 cut(s) 1137
StyD4I CCNGG 1 cut(s) 101
StyI CCWWGG 1 cut(s) 1481
TaaI ACNGT 6 cut(s) 97, 290, 889, 990, 1006, 1400
TaqI TCGA 7 cut(s) 30, 164, 336, 516, 576, 848, 1758
TaqII GACCGA 1 cut(s) 510
TasI AATT 7 cut(s) 183, 1197, 1207, 1287, 1387, 1467, 1521
TatI WGTACW 1 cut(s) 1580
TauI GCSGC 4 cut(s) 79, 415, 548, 1555
TfiI GAWTC 7 cut(s) 387, 610, 916, 1330, 1382, 1493, 1776
Tru1I TTAA 4 cut(s) 746, 1038, 1200, 1476
Tru9I TTAA 4 cut(s) 746, 1038, 1200, 1476
TscAI CASTG 2 cut(s) 945, 1405
TseFI GTSAC 1 cut(s) 1306
TseI GCWGC 3 cut(s) 454, 634, 1084
Tsp45I GTSAC 1 cut(s) 1306
TspDTI ATGAA 8 cut(s) 366, 464, 602, 1218, 1231, 1242, 1343, 1526
TspGWI ACGGA 1 cut(s) 147
TspRI CASTG 2 cut(s) 945, 1405
Van91I CCANNNNNTGG 2 cut(s) 628, 1624
VpaK11BI GGWCC 2 cut(s) 175, 766
VspI ATTAAT 1 cut(s) 1200
XagI CCTNNNNNAGG 1 cut(s) 646
XapI RAATTY 1 cut(s) 1207
XceI RCATGY 2 cut(s) 484, 1420
XmiI GTMKAC 2 cut(s) 17, 292
XspI CTAG 1 cut(s) 1137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.