pycom10g23540

Zingipain-2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0017406
Physical Location & Seq
Forward (+)
25655852 .. 25656277
426 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 426 bp
ATGACCAAGGCAAATGAGGCTGCTGCCTGGATAACTAGTTATGCAGAGGTACCTCCCAACAGTGAAACCGATCTACTCAAGGCTGTGTCCAAGCAACCAGTCTCCGTTTCCATCAATATATCAGAAGAATTTCAGCATTATTCAAGCGGGGTGTTCACCGGTGATGATTGTGGGACAGAAATGAGCCTCGCTGTTACCATCATTGGGTATGGGACAACTGAAGATGGCATCCCCTATTGGTTAATCAAGAAATCATGGTCCGATATGTGGGGTGAGACTGGCTACATGAAGATTCTTAGAAACGCTGATGTCCCAGGTGCTGTTTGTGGCCTTGCTACGAAAGCTTCCTATCCGATTATAAGTACTACAGACAAACCCGTAGGCTGTGAAAATGCCTGTATTTTGTACTTAAAGTATGATCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

142

Amino Acids

15.32

Weight (kDa)

4.55

Isoelectric Point (pI)

42.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C1 PF00112 5 - 119 1.2e-31 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 359
Acc65I GGTACC 1 cut(s) 49
AccB1I GGYRCC 1 cut(s) 49
AciI CCGC 1 cut(s) 147
AcsI RAATTY 1 cut(s) 128
AcuI CTGAAG 1 cut(s) 240
AfaI GTAC 3 cut(s) 51, 364, 407
AfiI CCNNNNNNNGG 2 cut(s) 204, 267
AgeI ACCGGT 1 cut(s) 158
AgsI TTSAA 1 cut(s) 144
AhlI ACTAGT 1 cut(s) 35
AjnI CCWGG 2 cut(s) 26, 313
AluBI AGCT 1 cut(s) 344
AluI AGCT 1 cut(s) 344
Alw26I GTCTC 2 cut(s) 106, 269
AlwNI CAGNNNCTG 1 cut(s) 320
AoxI GGCC 1 cut(s) 328
ApeKI GCWGC 2 cut(s) 20, 23
ApoI RAATTY 1 cut(s) 128
AsiGI ACCGGT 1 cut(s) 158
Asp700I GAANNNNTTC 1 cut(s) 129
Asp718I GGTACC 1 cut(s) 49
AspS9I GGNCC 1 cut(s) 258
AsuHPI GGTGA 3 cut(s) 148, 173, 284
AvaII GGWCC 1 cut(s) 258
BanI GGYRCC 1 cut(s) 49
BbvI GCAGC 2 cut(s) 7, 10
BccI CCATC 3 cut(s) 119, 206, 218
BciT130I CCWGG 2 cut(s) 28, 315
BcoDI GTCTC 2 cut(s) 106, 269
BcuI ACTAGT 1 cut(s) 35
BfaI CTAG 1 cut(s) 36
BfmI CTRYAG 1 cut(s) 366
BisI GCNGC 2 cut(s) 21, 24
BlsI GCNGC 2 cut(s) 22, 25
BmcAI AGTACT 1 cut(s) 364
Bme1390I CCNGG 2 cut(s) 28, 315
Bme18I GGWCC 1 cut(s) 258
BmgT120I GGNCC 1 cut(s) 258
BmiI GGNNCC 1 cut(s) 51
BmrFI CCNGG 2 cut(s) 28, 315
BmsI GCATC 1 cut(s) 237
BpuEI CTTGAG 1 cut(s) 62
BsaJI CCNNGG 2 cut(s) 6, 313
BsaWI WCCGGW 1 cut(s) 158
Bsc4I CCNNNNNNNGG 2 cut(s) 204, 267
Bse118I RCCGGY 1 cut(s) 158
Bse1I ACTGG 2 cut(s) 98, 283
BseBI CCWGG 2 cut(s) 28, 315
BseDI CCNNGG 2 cut(s) 6, 313
BseGI GGATG 1 cut(s) 228
BseLI CCNNNNNNNGG 2 cut(s) 204, 267
BseNI ACTGG 2 cut(s) 98, 283
BseXI GCAGC 2 cut(s) 7, 10
BshFI GGCC 1 cut(s) 330
BshNI GGYRCC 1 cut(s) 49
BshTI ACCGGT 1 cut(s) 158
BsiSI CCGG 1 cut(s) 159
BslFI GGGAC 3 cut(s) 187, 226, 296
BslI CCNNNNNNNGG 2 cut(s) 204, 267
BsmAI GTCTC 2 cut(s) 106, 269
BsmFI GGGAC 3 cut(s) 187, 226, 296
BsnI GGCC 1 cut(s) 330
Bsp143I GATC 2 cut(s) 70, 418
BspACI CCGC 1 cut(s) 147
BspANI GGCC 1 cut(s) 330
BspLI GGNNCC 1 cut(s) 51
BspT107I GGYRCC 1 cut(s) 49
BsrFI RCCGGY 1 cut(s) 158
BsrI ACTGG 2 cut(s) 98, 283
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 2 cut(s) 6, 313
BssMI GATC 2 cut(s) 70, 418
BssT1I CCWWGG 1 cut(s) 6
Bst2UI CCWGG 2 cut(s) 28, 315
Bst4CI ACNGT 1 cut(s) 62
BstDEI CTNAG 1 cut(s) 296
BstF5I GGATG 1 cut(s) 228
BstKTI GATC 2 cut(s) 73, 421
BstMAI GTCTC 2 cut(s) 106, 269
BstMBI GATC 2 cut(s) 70, 418
BstMWI GCNNNNNNNGC 2 cut(s) 17, 341
BstNI CCWGG 2 cut(s) 28, 315
BstSCI CCNGG 2 cut(s) 26, 313
BstSFI CTRYAG 1 cut(s) 366
BstV1I GCAGC 2 cut(s) 7, 10
BsuRI GGCC 1 cut(s) 330
BtsCI GGATG 1 cut(s) 228
BtsIMutI CAGTG 1 cut(s) 67
CaiI CAGNNNCTG 1 cut(s) 320
Cfr10I RCCGGY 1 cut(s) 158
Cfr13I GGNCC 1 cut(s) 258
Csp6I GTAC 3 cut(s) 50, 363, 406
CspAI ACCGGT 1 cut(s) 158
CviAII CATG 2 cut(s) 255, 286
CviJI RGCY 7 cut(s) 20, 83, 186, 282, 330, 344, 384
CviKI_1 RGCY 7 cut(s) 20, 83, 186, 282, 330, 344, 384
CviQI GTAC 3 cut(s) 50, 363, 406
DdeI CTNAG 1 cut(s) 296
DpnI GATC 2 cut(s) 72, 420
DpnII GATC 2 cut(s) 70, 418
Eco130I CCWWGG 1 cut(s) 6
Eco47I GGWCC 1 cut(s) 258
Eco57I CTGAAG 1 cut(s) 240
EcoRII CCWGG 2 cut(s) 26, 313
EcoT14I CCWWGG 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 2 cut(s) 258, 289
FaiI YATR 9 cut(s) 42, 119, 210, 256, 266, 287, 359, 417, 424
FaqI GGGAC 3 cut(s) 187, 226, 296
FatI CATG 2 cut(s) 254, 285
FauI CCCGC 1 cut(s) 140
Fnu4HI GCNGC 2 cut(s) 21, 24
FokI GGATG 1 cut(s) 215
Fsp4HI GCNGC 2 cut(s) 21, 24
FspBI CTAG 1 cut(s) 36
GluI GCNGC 2 cut(s) 21, 24
HaeIII GGCC 1 cut(s) 330
HapII CCGG 1 cut(s) 159
Hin1II CATG 2 cut(s) 258, 289
HindIII AAGCTT 1 cut(s) 342
HinfI GANTC 1 cut(s) 292
HpaII CCGG 1 cut(s) 159
HphI GGTGA 3 cut(s) 148, 173, 284
Hpy166II GTNNAC 1 cut(s) 156
Hpy188I TCNGA 3 cut(s) 124, 262, 354
Hpy188III TCNNGA 1 cut(s) 247
Hpy8I GTNNAC 1 cut(s) 156
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4V TGCA 1 cut(s) 44
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 341
HpyF3I CTNAG 1 cut(s) 296
Hsp92II CATG 2 cut(s) 258, 289
KpnI GGTACC 1 cut(s) 53
Kzo9I GATC 2 cut(s) 70, 418
LpnPI CCDG 8 cut(s) 13, 40, 111, 172, 264, 300, 327, 409
Lsp1109I GCAGC 2 cut(s) 7, 10
LweI GCATC 1 cut(s) 237
MaeI CTAG 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 193
MalI GATC 2 cut(s) 72, 420
MboI GATC 2 cut(s) 70, 418
MboII GAAGA 3 cut(s) 137, 233, 301
MluCI AATT 1 cut(s) 128
MnlI CCTC 4 cut(s) 10, 40, 63, 197
MroXI GAANNNNTTC 1 cut(s) 129
MseI TTAA 2 cut(s) 242, 410
MspI CCGG 1 cut(s) 159
MspR9I CCNGG 2 cut(s) 28, 315
MvaI CCWGG 2 cut(s) 28, 315
MwoI GCNNNNNNNGC 2 cut(s) 17, 341
NdeII GATC 2 cut(s) 70, 418
NlaIII CATG 2 cut(s) 258, 289
NlaIV GGNNCC 1 cut(s) 51
PdmI GAANNNNTTC 1 cut(s) 129
PfeI GAWTC 1 cut(s) 292
PinAI ACCGGT 1 cut(s) 158
PkrI GCNGC 2 cut(s) 22, 25
PsiI TTATAA 1 cut(s) 359
Psp6I CCWGG 2 cut(s) 26, 313
PspGI CCWGG 2 cut(s) 26, 313
PspN4I GGNNCC 1 cut(s) 51
PspPI GGNCC 1 cut(s) 258
PstNI CAGNNNCTG 1 cut(s) 320
RsaI GTAC 3 cut(s) 51, 364, 407
RsaNI GTAC 3 cut(s) 50, 363, 406
SaqAI TTAA 2 cut(s) 242, 410
SatI GCNGC 2 cut(s) 21, 24
Sau3AI GATC 2 cut(s) 70, 418
Sau96I GGNCC 1 cut(s) 258
ScaI AGTACT 1 cut(s) 364
ScrFI CCNGG 2 cut(s) 28, 315
SetI ASST 4 cut(s) 51, 55, 319, 346
SfaNI GCATC 1 cut(s) 237
SfcI CTRYAG 1 cut(s) 366
SgrAI CRCCGGYG 1 cut(s) 158
SinI GGWCC 1 cut(s) 258
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
SpeI ACTAGT 1 cut(s) 35
Sse9I AATT 1 cut(s) 128
SsiI CCGC 1 cut(s) 147
SspMI CTAG 1 cut(s) 36
StyD4I CCNGG 2 cut(s) 26, 313
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 1 cut(s) 62
TasI AATT 1 cut(s) 128
TatI WGTACW 2 cut(s) 362, 405
TfiI GAWTC 1 cut(s) 292
Tru1I TTAA 2 cut(s) 242, 410
Tru9I TTAA 2 cut(s) 242, 410
TscAI CASTG 1 cut(s) 67
TseI GCWGC 2 cut(s) 20, 23
TspDTI ATGAA 1 cut(s) 302
TspGWI ACGGA 1 cut(s) 94
TspRI CASTG 1 cut(s) 67
VpaK11BI GGWCC 1 cut(s) 258
XapI RAATTY 1 cut(s) 128
XmnI GAANNNNTTC 1 cut(s) 129
XspI CTAG 1 cut(s) 36
ZrmI AGTACT 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.