Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0017406

Physical Location & Seq

Genomic Coordinates Reverse (-)

8002326 .. 8003637

Gene Structure 1312 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031755

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGACAAAATCCCAAGCCACGTCCAGGAAATTGTATGAATTTGATCCGGAGAAAGAAAGCCGTTTTGCCATATTTGTGAAGAATTTGATACTTGTGGACAACTTCAACAAGGATGCGAACATGACTTACAAGTTAAGCCTCAACCCGTTTTCTGAACAAAATGGAGGAATCACCTCCGAAGAAAATTACCCATACACCGGTACAGATAAGGAAACATGTGACACCACCAAAACAAATGAGCATGTTGTCGAAATAACTGGTTTTGAATTGGTTCCTTGCAATGGCGAAAGCGACCTGCTCAAGGTTGTGGCCAAACAGCCAGTCTTGGTTGCCATTGAGACCAATGGAGAAGCCCTTAAGGCATACGCGGGAGGGGTAGTCTCCGGTGAGTGTGGGACAAACCTTACTCATACTGTTACAATTCTTGGCTATGAAACCACTGAAGATGGTACCGACTATTGGTCAGTGAAGAACTCGTGGGGAGAAAGATGGGATGAAAATGGCTGCATGAGAATTCGTAGATATGCTGGTCGCCCAGAAGGTCAGTGTGGCATTGCTCTTTATCCTTCCTACCCAACTGCATCAGCTACAGCGCTAGCTCCCTCTCCAAGTGCACTACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418

Pfam Domains

Protein Families

Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

208

Amino Acids

22.75

Weight (kDa)

4.81

Isoelectric Point (pI)

36.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	9 - 52	4.3e-08	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	50 - 193	8.7e-35	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017406)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g23540
rosa_chinensis	RchiOBHm_Chr5g0010611
rosa_laevigata	RLG00000031749 RLG00000031755 RLG00000031765
rosa_multiflora	Rmu_co8158362.1_g000001 Rmu_sc0014635.1_g000006 Rmu_sc0016264.1_g000004
rosa_roxburghii	Rroxscaffold_1G00065760
rosa_samantha	Rh3AG064100 Rh3AG064300 Rh5AG082800 Rh5BG078000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	303
Acc65I	GGTACC	1 cut(s)	449
AccB1I	GGYRCC	1 cut(s)	449
AccII	CGCG	1 cut(s)	368
AccIII	TCCGGA	1 cut(s)	46
AciI	CCGC	1 cut(s)	368
AclWI	GGATC	1 cut(s)	38
AcoI	YGGCCR	1 cut(s)	309
AcsI	RAATTY	3 cut(s)	38, 82, 513
AcuI	CTGAAG	1 cut(s)	462
AfaI	GTAC	2 cut(s)	202, 451
AfeI	AGCGCT	1 cut(s)	594
AfiI	CCNNNNNNNGG	5 cut(s)	24, 197, 281, 301, 459
AflII	CTTAAG	1 cut(s)	356
AflIII	ACRYGT	1 cut(s)	215
AgeI	ACCGGT	1 cut(s)	197
AgsI	TTSAA	2 cut(s)	106, 266
AhdI	GACNNNNNGTC	1 cut(s)	460
AjiI	CACGTC	1 cut(s)	21
AjnI	CCWGG	1 cut(s)	23
AluBI	AGCT	2 cut(s)	587, 599
AluI	AGCT	2 cut(s)	587, 599
Alw21I	GWGCWC	1 cut(s)	616
Alw26I	GTCTC	2 cut(s)	332, 385
Alw44I	GTGCAC	1 cut(s)	612
AlwI	GGATC	1 cut(s)	38
Aor13HI	TCCGGA	1 cut(s)	46
Aor51HI	AGCGCT	1 cut(s)	594
AoxI	GGCC	1 cut(s)	309
ApaLI	GTGCAC	1 cut(s)	612
ApeKI	GCWGC	1 cut(s)	504
ApoI	RAATTY	3 cut(s)	38, 82, 513
ArsI	GACNNNNNNTTYG	2 cut(s)	306, 338
AsiGI	ACCGGT	1 cut(s)	197
Asp700I	GAANNNNTTC	1 cut(s)	270
Asp718I	GGTACC	1 cut(s)	449
AspLEI	GCGC	1 cut(s)	595
AsuHPI	GGTGA	2 cut(s)	163, 398
AsuNHI	GCTAGC	1 cut(s)	595
BaeGI	GKGCMC	1 cut(s)	616
BalI	TGGCCA	1 cut(s)	311
BanI	GGYRCC	1 cut(s)	449
BauI	CACGAG	1 cut(s)	475
Bbv12I	GWGCWC	1 cut(s)	616
BbvI	GCAGC	1 cut(s)	491
BccI	CCATC	2 cut(s)	440, 483
BceAI	ACGGC	1 cut(s)	45
BciT130I	CCWGG	1 cut(s)	25
BcoDI	GTCTC	2 cut(s)	332, 385
BfaI	CTAG	1 cut(s)	596
BfmI	CTRYAG	2 cut(s)	588, 620
BfoI	RGCGCY	1 cut(s)	596
BfrI	CTTAAG	1 cut(s)	356
BfuAI	ACCTGC	1 cut(s)	303
BglI	GCCNNNNNGGC	1 cut(s)	359
BisI	GCNGC	1 cut(s)	505
BlsI	GCNGC	1 cut(s)	506
Bme1390I	CCNGG	1 cut(s)	25
BmeRI	GACNNNNNGTC	1 cut(s)	460
BmgBI	CACGTC	1 cut(s)	21
BmiI	GGNNCC	2 cut(s)	273, 451
BmrFI	CCNGG	1 cut(s)	25
BmsI	GCATC	2 cut(s)	103, 590
BmtI	GCTAGC	1 cut(s)	599
BpuEI	CTTGAG	1 cut(s)	284
BsaI	GGTCTC	1 cut(s)	332
BsaWI	WCCGGW	3 cut(s)	46, 197, 383
BsaXI	ACNNNNNCTCC	2 cut(s)	363, 393
Bsc4I	CCNNNNNNNGG	5 cut(s)	24, 197, 281, 301, 459
Bse118I	RCCGGY	1 cut(s)	197
Bse1I	ACTGG	2 cut(s)	262, 320
Bse3DI	GCAATG	2 cut(s)	286, 552
BseAI	TCCGGA	1 cut(s)	46
BseBI	CCWGG	1 cut(s)	25
BseGI	GGATG	2 cut(s)	118, 499
BseLI	CCNNNNNNNGG	5 cut(s)	24, 197, 281, 301, 459
BseMI	GCAATG	2 cut(s)	286, 552
BseNI	ACTGG	2 cut(s)	262, 320
BseSI	GKGCMC	1 cut(s)	616
BseXI	GCAGC	1 cut(s)	491
Bsh1236I	CGCG	1 cut(s)	368
BshFI	GGCC	1 cut(s)	311
BshNI	GGYRCC	1 cut(s)	449
BshTI	ACCGGT	1 cut(s)	197
BsiHKAI	GWGCWC	1 cut(s)	616
BsiSI	CCGG	3 cut(s)	47, 198, 384
BslFI	GGGAC	1 cut(s)	409
BslI	CCNNNNNNNGG	5 cut(s)	24, 197, 281, 301, 459
BsmAI	GTCTC	2 cut(s)	332, 385
BsmFI	GGGAC	1 cut(s)	409
BsnI	GGCC	1 cut(s)	311
Bso31I	GGTCTC	1 cut(s)	332
Bsp1286I	GDGCHC	1 cut(s)	616
Bsp13I	TCCGGA	1 cut(s)	46
Bsp143I	GATC	1 cut(s)	43
BspACI	CCGC	1 cut(s)	368
BspANI	GGCC	1 cut(s)	311
BspEI	TCCGGA	1 cut(s)	46
BspFNI	CGCG	1 cut(s)	368
BspLI	GGNNCC	2 cut(s)	273, 451
BspMI	ACCTGC	1 cut(s)	303
BspOI	GCTAGC	1 cut(s)	599
BspPI	GGATC	1 cut(s)	38
BspT107I	GGYRCC	1 cut(s)	449
BspTI	CTTAAG	1 cut(s)	356
BspTNI	GGTCTC	1 cut(s)	332
BsrDI	GCAATG	2 cut(s)	286, 552
BsrFI	RCCGGY	1 cut(s)	197
BsrI	ACTGG	2 cut(s)	262, 320
BssAI	RCCGGY	1 cut(s)	197
BssMI	GATC	1 cut(s)	43
BssSI	CACGAG	1 cut(s)	475
Bst2BI	CACGAG	1 cut(s)	475
Bst2UI	CCWGG	1 cut(s)	25
Bst4CI	ACNGT	1 cut(s)	415
BstAFI	CTTAAG	1 cut(s)	356
BstC8I	GCNNGC	1 cut(s)	597
BstENI	CCTNNNNNAGG	1 cut(s)	299
BstF5I	GGATG	2 cut(s)	118, 499
BstFNI	CGCG	1 cut(s)	368
BstH2I	RGCGCY	1 cut(s)	596
BstHHI	GCGC	1 cut(s)	595
BstKTI	GATC	1 cut(s)	46
BstMAI	GTCTC	2 cut(s)	332, 385
BstMBI	GATC	1 cut(s)	43
BstMWI	GCNNNNNNNGC	1 cut(s)	359
BstNI	CCWGG	1 cut(s)	25
BstNSI	RCATGY	2 cut(s)	219, 245
BstSCI	CCNGG	1 cut(s)	23
BstSFI	CTRYAG	2 cut(s)	588, 620
BstSLI	GKGCMC	1 cut(s)	616
BstUI	CGCG	1 cut(s)	368
BstV1I	GCAGC	1 cut(s)	491
BsuRI	GGCC	1 cut(s)	311
BtrI	CACGTC	1 cut(s)	21
BtsCI	GGATG	2 cut(s)	118, 499
BtsIMutI	CAGTG	3 cut(s)	438, 471, 551
BveI	ACCTGC	1 cut(s)	303
Cac8I	GCNNGC	1 cut(s)	597
CfoI	GCGC	1 cut(s)	595
Cfr10I	RCCGGY	1 cut(s)	197
Csp6I	GTAC	2 cut(s)	201, 450
CspAI	ACCGGT	1 cut(s)	197
CviAII	CATG	4 cut(s)	121, 216, 242, 508
CviQI	GTAC	2 cut(s)	201, 450
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
DriI	GACNNNNNGTC	1 cut(s)	460
EaeI	YGGCCR	1 cut(s)	309
Eam1105I	GACNNNNNGTC	1 cut(s)	460
Eco31I	GGTCTC	1 cut(s)	332
Eco47III	AGCGCT	1 cut(s)	594
Eco57I	CTGAAG	1 cut(s)	462
EcoNI	CCTNNNNNAGG	1 cut(s)	299
EcoRI	GAATTC	1 cut(s)	513
EcoRII	CCWGG	1 cut(s)	23
FaeI	CATG	4 cut(s)	124, 219, 245, 511
FaqI	GGGAC	1 cut(s)	409
FatI	CATG	4 cut(s)	120, 215, 241, 507
FauI	CCCGC	1 cut(s)	361
Fnu4HI	GCNGC	1 cut(s)	505
FokI	GGATG	2 cut(s)	125, 506
Fsp4HI	GCNGC	1 cut(s)	505
FspBI	CTAG	1 cut(s)	596
GlaI	GCGC	1 cut(s)	594
GluI	GCNGC	1 cut(s)	505
HaeII	RGCGCY	1 cut(s)	596
HaeIII	GGCC	1 cut(s)	311
HapII	CCGG	3 cut(s)	47, 198, 384
HhaI	GCGC	1 cut(s)	595
Hin1II	CATG	4 cut(s)	124, 219, 245, 511
Hin6I	GCGC	1 cut(s)	593
HinP1I	GCGC	1 cut(s)	593
HinfI	GANTC	1 cut(s)	168
HpaII	CCGG	3 cut(s)	47, 198, 384
HphI	GGTGA	2 cut(s)	163, 398
Hpy166II	GTNNAC	2 cut(s)	97, 614
Hpy188I	TCNGA	2 cut(s)	154, 178
Hpy188III	TCNNGA	1 cut(s)	47
Hpy8I	GTNNAC	2 cut(s)	97, 614
HpyAV	CCTTC	2 cut(s)	533, 576
HpyCH4III	ACNGT	1 cut(s)	415
HpyCH4IV	ACGT	1 cut(s)	20
HpyCH4V	TGCA	4 cut(s)	279, 507, 581, 614
HpyF10VI	GCNNNNNNNGC	1 cut(s)	359
HpySE526I	ACGT	1 cut(s)	20
Hsp92II	CATG	4 cut(s)	124, 219, 245, 511
HspAI	GCGC	1 cut(s)	593
Kpn2I	TCCGGA	1 cut(s)	46
KpnI	GGTACC	1 cut(s)	453
Kzo9I	GATC	1 cut(s)	43
LmnI	GCTCC	1 cut(s)	604
Lsp1109I	GCAGC	1 cut(s)	491
LweI	GCATC	2 cut(s)	103, 590
MaeI	CTAG	1 cut(s)	596
MaeII	ACGT	1 cut(s)	20
MaeIII	GTNAC	2 cut(s)	218, 415
MalI	GATC	1 cut(s)	45
MboI	GATC	1 cut(s)	43
MboII	GAAGA	4 cut(s)	91, 191, 455, 481
MhlI	GDGCHC	1 cut(s)	616
MlsI	TGGCCA	1 cut(s)	311
MluCI	AATT	7 cut(s)	29, 38, 82, 184, 266, 420, 513
MluNI	TGGCCA	1 cut(s)	311
MnlI	CCTC	5 cut(s)	149, 158, 184, 365, 613
Mox20I	TGGCCA	1 cut(s)	311
MroI	TCCGGA	1 cut(s)	46
MroXI	GAANNNNTTC	1 cut(s)	270
MscI	TGGCCA	1 cut(s)	311
MseI	TTAA	2 cut(s)	134, 357
MslI	CAYNNNNRTG	1 cut(s)	74
Msp20I	TGGCCA	1 cut(s)	311
MspCI	CTTAAG	1 cut(s)	356
MspI	CCGG	3 cut(s)	47, 198, 384
MspR9I	CCNGG	1 cut(s)	25
MvaI	CCWGG	1 cut(s)	25
MvnI	CGCG	1 cut(s)	368
MwoI	GCNNNNNNNGC	1 cut(s)	359
NdeII	GATC	1 cut(s)	43
NheI	GCTAGC	1 cut(s)	595
NlaIII	CATG	4 cut(s)	124, 219, 245, 511
NlaIV	GGNNCC	2 cut(s)	273, 451
NmuCI	GTSAC	1 cut(s)	218
NspI	RCATGY	2 cut(s)	219, 245
PciI	ACATGT	1 cut(s)	215
PdmI	GAANNNNTTC	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	168
PfoI	TCCNGGA	1 cut(s)	23
PinAI	ACCGGT	1 cut(s)	197
PkrI	GCNGC	1 cut(s)	506
PscI	ACATGT	1 cut(s)	215
Psp6I	CCWGG	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	23
PspN4I	GGNNCC	2 cut(s)	273, 451
PsrI	GAACNNNNNNTAC	2 cut(s)	110, 142
RsaI	GTAC	2 cut(s)	202, 451
RsaNI	GTAC	2 cut(s)	201, 450
RseI	CAYNNNNRTG	1 cut(s)	74
SaqAI	TTAA	2 cut(s)	134, 357
SatI	GCNGC	1 cut(s)	505
Sau3AI	GATC	1 cut(s)	43
ScrFI	CCNGG	1 cut(s)	25
SduI	GDGCHC	1 cut(s)	616
SetI	ASST	8 cut(s)	23, 176, 297, 306, 405, 544, 589, 601
SfaNI	GCATC	2 cut(s)	103, 590
SfcI	CTRYAG	2 cut(s)	588, 620
SmiMI	CAYNNNNRTG	1 cut(s)	74
SmlI	CTYRAG	2 cut(s)	299, 356
SmoI	CTYRAG	2 cut(s)	299, 356
Sse9I	AATT	7 cut(s)	29, 38, 82, 184, 266, 420, 513
SsiI	CCGC	1 cut(s)	368
SspMI	CTAG	1 cut(s)	596
StyD4I	CCNGG	1 cut(s)	23
TaaI	ACNGT	1 cut(s)	415
TaiI	ACGT	1 cut(s)	23
TaqI	TCGA	1 cut(s)	249
TasI	AATT	7 cut(s)	29, 38, 82, 184, 266, 420, 513
TfiI	GAWTC	1 cut(s)	168
Tru1I	TTAA	2 cut(s)	134, 357
Tru9I	TTAA	2 cut(s)	134, 357
TscAI	CASTG	3 cut(s)	445, 471, 551
TseFI	GTSAC	1 cut(s)	218
TseI	GCWGC	1 cut(s)	504
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	3 cut(s)	51, 447, 510
TspRI	CASTG	3 cut(s)	445, 471, 551
Vha464I	CTTAAG	1 cut(s)	356
VneI	GTGCAC	1 cut(s)	612
XagI	CCTNNNNNAGG	1 cut(s)	299
XapI	RAATTY	3 cut(s)	38, 82, 513
XceI	RCATGY	2 cut(s)	219, 245
XmnI	GAANNNNTTC	1 cut(s)	270
XspI	CTAG	1 cut(s)	596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.