RLG00000031749

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0017406
Physical Location & Seq
Reverse (-)
7956579 .. 7957038
460 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031749

Sequence Viewer

Length: 372 bp
ATGGAGGAATCACCTCCGAAGAAAATTACCCATACACCGCGCCTGCTCAAGGCTGTGGCCAAACAGTCAGTCTTGGTTGCCATTGAGACCAATGGAGAAGCCCTTAAGGCATACGCGGGAGGGGTACTCTCCGGTGAGTGTGGGACAAACCTTACTCATACTGTTACAATTCTTGGCTATGAAACCACTGAAGATGGTACCGACTATTGGTCAGTGAAGAACTCGTGGGGAGAAAGATGGGATGAAAATGGCTGCATGAGAATTCGTAGAAATGCTGGTCGCCCAGAACGTCAGTGTGGCATTGCTCTTTATCCTTCCTACCCAACCGCATCAGCTACAGCGCTAGCTCGCTCTCCAAGTGCACTACTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

124

Amino Acids

13.35

Weight (kDa)

7.71

Isoelectric Point (pI)

51.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C1 PF00112 13 - 109 6.2e-23 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 197
AccB1I GGYRCC 1 cut(s) 197
AccII CGCG 2 cut(s) 40, 116
AciI CCGC 3 cut(s) 38, 116, 327
AcoI YGGCCR 1 cut(s) 57
AcsI RAATTY 1 cut(s) 261
AcuI CTGAAG 1 cut(s) 210
AfaI GTAC 2 cut(s) 126, 199
AfeI AGCGCT 1 cut(s) 342
AfiI CCNNNNNNNGG 2 cut(s) 49, 207
AflII CTTAAG 1 cut(s) 104
AhdI GACNNNNNGTC 1 cut(s) 208
AluBI AGCT 2 cut(s) 335, 347
AluI AGCT 2 cut(s) 335, 347
Alw21I GWGCWC 1 cut(s) 364
Alw26I GTCTC 1 cut(s) 80
Alw44I GTGCAC 1 cut(s) 360
Aor51HI AGCGCT 1 cut(s) 342
AoxI GGCC 1 cut(s) 57
ApaLI GTGCAC 1 cut(s) 360
ApeKI GCWGC 1 cut(s) 252
ApoI RAATTY 1 cut(s) 261
ArsI GACNNNNNNTTYG 2 cut(s) 54, 86
Asp718I GGTACC 1 cut(s) 197
AspLEI GCGC 2 cut(s) 42, 343
AsuHPI GGTGA 2 cut(s) 3, 146
AsuNHI GCTAGC 1 cut(s) 343
BaeGI GKGCMC 1 cut(s) 364
BalI TGGCCA 1 cut(s) 59
BanI GGYRCC 1 cut(s) 197
BauI CACGAG 1 cut(s) 223
Bbv12I GWGCWC 1 cut(s) 364
BbvI GCAGC 1 cut(s) 239
BccI CCATC 2 cut(s) 188, 231
BcoDI GTCTC 1 cut(s) 80
BfaI CTAG 1 cut(s) 344
BfmI CTRYAG 2 cut(s) 336, 368
BfoI RGCGCY 1 cut(s) 344
BfrI CTTAAG 1 cut(s) 104
BglI GCCNNNNNGGC 1 cut(s) 107
BisI GCNGC 1 cut(s) 253
BlsI GCNGC 1 cut(s) 254
BmeRI GACNNNNNGTC 1 cut(s) 208
BmiI GGNNCC 1 cut(s) 199
BmsI GCATC 1 cut(s) 338
BmtI GCTAGC 1 cut(s) 347
BplI GAGNNNNNCTC 2 cut(s) 111, 143
BpuEI CTTGAG 1 cut(s) 32
BsaI GGTCTC 1 cut(s) 80
BsaWI WCCGGW 1 cut(s) 131
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 207
Bse3DI GCAATG 1 cut(s) 300
BseGI GGATG 1 cut(s) 247
BseLI CCNNNNNNNGG 2 cut(s) 49, 207
BseMI GCAATG 1 cut(s) 300
BseSI GKGCMC 1 cut(s) 364
BseXI GCAGC 1 cut(s) 239
Bsh1236I CGCG 2 cut(s) 40, 116
BshFI GGCC 1 cut(s) 59
BshNI GGYRCC 1 cut(s) 197
BsiHKAI GWGCWC 1 cut(s) 364
BsiSI CCGG 1 cut(s) 132
BslFI GGGAC 1 cut(s) 157
BslI CCNNNNNNNGG 2 cut(s) 49, 207
BsmAI GTCTC 1 cut(s) 80
BsmFI GGGAC 1 cut(s) 157
BsnI GGCC 1 cut(s) 59
Bso31I GGTCTC 1 cut(s) 80
Bsp1286I GDGCHC 1 cut(s) 364
BspACI CCGC 3 cut(s) 38, 116, 327
BspANI GGCC 1 cut(s) 59
BspFNI CGCG 2 cut(s) 40, 116
BspLI GGNNCC 1 cut(s) 199
BspOI GCTAGC 1 cut(s) 347
BspT107I GGYRCC 1 cut(s) 197
BspTI CTTAAG 1 cut(s) 104
BspTNI GGTCTC 1 cut(s) 80
BsrDI GCAATG 1 cut(s) 300
BssSI CACGAG 1 cut(s) 223
Bst2BI CACGAG 1 cut(s) 223
Bst4CI ACNGT 2 cut(s) 66, 163
BstAFI CTTAAG 1 cut(s) 104
BstC8I GCNNGC 3 cut(s) 44, 345, 349
BstENI CCTNNNNNAGG 1 cut(s) 47
BstF5I GGATG 1 cut(s) 247
BstFNI CGCG 2 cut(s) 40, 116
BstH2I RGCGCY 1 cut(s) 344
BstHHI GCGC 2 cut(s) 42, 343
BstMAI GTCTC 1 cut(s) 80
BstMWI GCNNNNNNNGC 1 cut(s) 107
BstSFI CTRYAG 2 cut(s) 336, 368
BstSLI GKGCMC 1 cut(s) 364
BstUI CGCG 2 cut(s) 40, 116
BstV1I GCAGC 1 cut(s) 239
BsuRI GGCC 1 cut(s) 59
BtsCI GGATG 1 cut(s) 247
BtsIMutI CAGTG 3 cut(s) 186, 219, 299
Cac8I GCNNGC 3 cut(s) 44, 345, 349
CfoI GCGC 2 cut(s) 42, 343
Csp6I GTAC 2 cut(s) 125, 198
CviAII CATG 1 cut(s) 256
CviJI RGCY 7 cut(s) 53, 59, 101, 177, 252, 335, 347
CviKI_1 RGCY 7 cut(s) 53, 59, 101, 177, 252, 335, 347
CviQI GTAC 2 cut(s) 125, 198
DriI GACNNNNNGTC 1 cut(s) 208
EaeI YGGCCR 1 cut(s) 57
Eam1105I GACNNNNNGTC 1 cut(s) 208
Eco31I GGTCTC 1 cut(s) 80
Eco47III AGCGCT 1 cut(s) 342
Eco57I CTGAAG 1 cut(s) 210
EcoNI CCTNNNNNAGG 1 cut(s) 47
EcoRI GAATTC 1 cut(s) 261
FaeI CATG 1 cut(s) 259
FaiI YATR 6 cut(s) 33, 112, 159, 180, 257, 370
FaqI GGGAC 1 cut(s) 157
FatI CATG 1 cut(s) 255
FauI CCCGC 1 cut(s) 109
Fnu4HI GCNGC 1 cut(s) 253
FokI GGATG 1 cut(s) 254
Fsp4HI GCNGC 1 cut(s) 253
FspBI CTAG 1 cut(s) 344
GlaI GCGC 2 cut(s) 41, 342
GluI GCNGC 1 cut(s) 253
HaeII RGCGCY 1 cut(s) 344
HaeIII GGCC 1 cut(s) 59
HapII CCGG 1 cut(s) 132
HhaI GCGC 2 cut(s) 42, 343
Hin1II CATG 1 cut(s) 259
Hin6I GCGC 2 cut(s) 40, 341
HinP1I GCGC 2 cut(s) 40, 341
HinfI GANTC 1 cut(s) 8
HpaII CCGG 1 cut(s) 132
HphI GGTGA 2 cut(s) 3, 146
Hpy166II GTNNAC 1 cut(s) 362
Hpy188I TCNGA 1 cut(s) 18
Hpy8I GTNNAC 1 cut(s) 362
HpyAV CCTTC 1 cut(s) 324
HpyCH4III ACNGT 2 cut(s) 66, 163
HpyCH4IV ACGT 1 cut(s) 289
HpyCH4V TGCA 2 cut(s) 255, 362
HpyF10VI GCNNNNNNNGC 1 cut(s) 107
HpySE526I ACGT 1 cut(s) 289
Hsp92II CATG 1 cut(s) 259
HspAI GCGC 2 cut(s) 40, 341
KpnI GGTACC 1 cut(s) 201
LpnPI CCDG 4 cut(s) 56, 145, 261, 297
Lsp1109I GCAGC 1 cut(s) 239
LweI GCATC 1 cut(s) 338
MaeI CTAG 1 cut(s) 344
MaeII ACGT 1 cut(s) 289
MaeIII GTNAC 1 cut(s) 163
MboII GAAGA 3 cut(s) 31, 203, 229
MhlI GDGCHC 1 cut(s) 364
MlsI TGGCCA 1 cut(s) 59
MluCI AATT 3 cut(s) 24, 168, 261
MluNI TGGCCA 1 cut(s) 59
MnlI CCTC 2 cut(s) 24, 113
Mox20I TGGCCA 1 cut(s) 59
MscI TGGCCA 1 cut(s) 59
MseI TTAA 1 cut(s) 105
Msp20I TGGCCA 1 cut(s) 59
MspCI CTTAAG 1 cut(s) 104
MspI CCGG 1 cut(s) 132
MvnI CGCG 2 cut(s) 40, 116
MwoI GCNNNNNNNGC 1 cut(s) 107
NheI GCTAGC 1 cut(s) 343
NlaIII CATG 1 cut(s) 259
NlaIV GGNNCC 1 cut(s) 199
PcsI WCGNNNNNNNCGW 1 cut(s) 286
PfeI GAWTC 1 cut(s) 8
PkrI GCNGC 1 cut(s) 254
PspN4I GGNNCC 1 cut(s) 199
RsaI GTAC 2 cut(s) 126, 199
RsaNI GTAC 2 cut(s) 125, 198
SaqAI TTAA 1 cut(s) 105
SatI GCNGC 1 cut(s) 253
SduI GDGCHC 1 cut(s) 364
SetI ASST 5 cut(s) 16, 153, 292, 337, 349
SfaNI GCATC 1 cut(s) 338
SfcI CTRYAG 2 cut(s) 336, 368
SmlI CTYRAG 2 cut(s) 47, 104
SmoI CTYRAG 2 cut(s) 47, 104
Sse9I AATT 3 cut(s) 24, 168, 261
SsiI CCGC 3 cut(s) 38, 116, 327
SspMI CTAG 1 cut(s) 344
TaaI ACNGT 2 cut(s) 66, 163
TaiI ACGT 1 cut(s) 292
TasI AATT 3 cut(s) 24, 168, 261
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TscAI CASTG 3 cut(s) 193, 219, 299
TseI GCWGC 1 cut(s) 252
TspDTI ATGAA 2 cut(s) 195, 258
TspRI CASTG 3 cut(s) 193, 219, 299
Vha464I CTTAAG 1 cut(s) 104
VneI GTGCAC 1 cut(s) 360
XagI CCTNNNNNAGG 1 cut(s) 47
XapI RAATTY 1 cut(s) 261
XspI CTAG 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.