Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8158362.1

Orthogroup ID

OG0017406

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 659

Gene Structure 659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8158362.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

cagtggcagcaattgagggcattaccaaaatcaaaagtaaccaattgatttcactgtccgagcaacaacttgtggactgtaacagagatcaaattaacaagggctgcggtggtggtaatatggaagatgcctttaaatacataaatgacaacggaggaatcactagtgaagaaaactaccaatacaagggtgcagaagagacatgtgacactactaagacgactgaatatgctgccaagataaacggttatgaaatggttcctcccaacagcgaaaatgatctactaaaggccgtggccaagcaaccagtctcagtcgcccttgatgccgatggagctgaatttagggcatacgcaagtggggtattttctggtaattgcgggacaaaactaacccatgctgttacaatcgttgggtacggaacgactgaagaaggcaccaactattggttagtgaagaattcatggggcgaaacctggggtgaaaagggctacatgagaattcttcgaaatgctggtcctccaggaggtttgtgtggcattgctatgtacccttcttatccaactgcat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418

Pfam Domains

Protein Families

Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

189

Amino Acids

20.33

Weight (kDa)

4.78

Isoelectric Point (pI)

26.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017406)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g23540
rosa_chinensis	RchiOBHm_Chr5g0010611
rosa_laevigata	RLG00000031749 RLG00000031755 RLG00000031765
rosa_multiflora	Rmu_co8158362.1_g000001 Rmu_sc0014635.1_g000006 Rmu_sc0016264.1_g000004
rosa_roxburghii	Rroxscaffold_1G00065760
rosa_samantha	Rh3AG064100 Rh3AG064300 Rh5AG082800 Rh5BG078000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	436
AccB7I	CCANNNNNTGG	1 cut(s)	446
AciI	CCGC	2 cut(s)	107, 380
AcoI	YGGCCR	1 cut(s)	296
AcsI	RAATTY	3 cut(s)	340, 459, 500
AcuI	CTGAAG	1 cut(s)	449
AfaI	GTAC	2 cut(s)	418, 550
AfiI	CCNNNNNNNGG	3 cut(s)	186, 446, 526
AflIII	ACRYGT	1 cut(s)	202
AhlI	ACTAGT	1 cut(s)	163
AjnI	CCWGG	2 cut(s)	475, 522
AluBI	AGCT	1 cut(s)	337
AluI	AGCT	1 cut(s)	337
Alw26I	GTCTC	2 cut(s)	193, 315
AoxI	GGCC	2 cut(s)	290, 296
ApeKI	GCWGC	3 cut(s)	7, 104, 232
ApoI	RAATTY	3 cut(s)	340, 459, 500
ArsI	GACNNNNNNTTYG	2 cut(s)	501, 533
Asp700I	GAANNNNTTC	1 cut(s)	257
AspS9I	GGNCC	1 cut(s)	517
AsuHPI	GGTGA	1 cut(s)	493
AsuII	TTCGAA	1 cut(s)	507
AvaII	GGWCC	1 cut(s)	517
BalI	TGGCCA	1 cut(s)	298
BanI	GGYRCC	1 cut(s)	436
BbvI	GCAGC	3 cut(s)	19, 91, 219
BccI	CCATC	1 cut(s)	325
BceAI	ACGGC	1 cut(s)	277
BciT130I	CCWGG	2 cut(s)	477, 524
BcoDI	GTCTC	2 cut(s)	193, 315
BcuI	ACTAGT	1 cut(s)	163
BfaI	CTAG	1 cut(s)	164
BisI	GCNGC	3 cut(s)	8, 105, 233
BlsI	GCNGC	3 cut(s)	9, 106, 234
Bme1390I	CCNGG	2 cut(s)	477, 524
Bme18I	GGWCC	1 cut(s)	517
BmgT120I	GGNCC	1 cut(s)	517
BmiI	GGNNCC	2 cut(s)	260, 438
BmrFI	CCNGG	2 cut(s)	477, 524
BmsI	GCATC	2 cut(s)	117, 315
BpmI	CTGGAG	1 cut(s)	506
Bpu14I	TTCGAA	1 cut(s)	507
BsaJI	CCNNGG	2 cut(s)	293, 476
Bsc4I	CCNNNNNNNGG	3 cut(s)	186, 446, 526
Bse1I	ACTGG	1 cut(s)	307
Bse3DI	GCAATG	1 cut(s)	539
BseBI	CCWGG	2 cut(s)	477, 524
BseDI	CCNNGG	2 cut(s)	293, 476
BseLI	CCNNNNNNNGG	3 cut(s)	186, 446, 526
BseMI	GCAATG	1 cut(s)	539
BseMII	CTCAG	1 cut(s)	326
BseNI	ACTGG	1 cut(s)	307
BseXI	GCAGC	3 cut(s)	19, 91, 219
BsgI	GTGCAG	1 cut(s)	212
BshFI	GGCC	2 cut(s)	292, 298
BshNI	GGYRCC	1 cut(s)	436
BslFI	GGGAC	1 cut(s)	396
BslI	CCNNNNNNNGG	3 cut(s)	186, 446, 526
BsmAI	GTCTC	2 cut(s)	193, 315
BsmFI	GGGAC	1 cut(s)	396
BsnI	GGCC	2 cut(s)	292, 298
Bsp119I	TTCGAA	1 cut(s)	507
Bsp143I	GATC	2 cut(s)	87, 279
BspACI	CCGC	2 cut(s)	107, 380
BspANI	GGCC	2 cut(s)	292, 298
BspCNI	CTCAG	1 cut(s)	325
BspLI	GGNNCC	2 cut(s)	260, 438
BspT104I	TTCGAA	1 cut(s)	507
BspT107I	GGYRCC	1 cut(s)	436
BsrDI	GCAATG	1 cut(s)	539
BsrI	ACTGG	1 cut(s)	307
BssECI	CCNNGG	2 cut(s)	293, 476
BssMI	GATC	2 cut(s)	87, 279
Bst2UI	CCWGG	2 cut(s)	477, 524
Bst4CI	ACNGT	3 cut(s)	56, 79, 247
Bst6I	CTCTTC	1 cut(s)	191
BstBI	TTCGAA	1 cut(s)	507
BstDEI	CTNAG	2 cut(s)	215, 312
BstDSI	CCRYGG	1 cut(s)	293
BstENI	CCTNNNNNAGG	1 cut(s)	524
BstKTI	GATC	2 cut(s)	90, 282
BstMAI	GTCTC	2 cut(s)	193, 315
BstMBI	GATC	2 cut(s)	87, 279
BstMWI	GCNNNNNNNGC	2 cut(s)	325, 334
BstNI	CCWGG	2 cut(s)	477, 524
BstNSI	RCATGY	1 cut(s)	206
BstSCI	CCNGG	2 cut(s)	475, 522
BstV1I	GCAGC	3 cut(s)	19, 91, 219
BsuRI	GGCC	2 cut(s)	292, 298
BtgI	CCRYGG	1 cut(s)	293
BtsIMutI	CAGTG	2 cut(s)	8, 52
Cfr13I	GGNCC	1 cut(s)	517
Csp6I	GTAC	2 cut(s)	417, 549
CviAII	CATG	4 cut(s)	203, 397, 464, 495
CviJI	RGCY	5 cut(s)	104, 292, 298, 337, 491
CviKI_1	RGCY	5 cut(s)	104, 292, 298, 337, 491
CviQI	GTAC	2 cut(s)	417, 549
DdeI	CTNAG	2 cut(s)	215, 312
DpnI	GATC	2 cut(s)	89, 281
DpnII	GATC	2 cut(s)	87, 279
DraI	TTTAAA	1 cut(s)	135
EaeI	YGGCCR	1 cut(s)	296
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
Eco47I	GGWCC	1 cut(s)	517
Eco57I	CTGAAG	1 cut(s)	449
EcoNI	CCTNNNNNAGG	1 cut(s)	524
EcoRI	GAATTC	2 cut(s)	459, 500
EcoRII	CCWGG	2 cut(s)	475, 522
FaeI	CATG	4 cut(s)	206, 400, 467, 498
FaqI	GGGAC	1 cut(s)	396
FatI	CATG	4 cut(s)	202, 396, 463, 494
FauI	CCCGC	1 cut(s)	373
Fnu4HI	GCNGC	3 cut(s)	8, 105, 233
Fsp4HI	GCNGC	3 cut(s)	8, 105, 233
FspBI	CTAG	1 cut(s)	164
GluI	GCNGC	3 cut(s)	8, 105, 233
GsuI	CTGGAG	1 cut(s)	506
HaeIII	GGCC	2 cut(s)	292, 298
Hin1II	CATG	4 cut(s)	206, 400, 467, 498
HinfI	GANTC	1 cut(s)	158
HphI	GGTGA	1 cut(s)	493
Hpy166II	GTNNAC	1 cut(s)	75
Hpy188I	TCNGA	1 cut(s)	60
Hpy8I	GTNNAC	1 cut(s)	75
HpyAV	CCTTC	2 cut(s)	427, 563
HpyCH4III	ACNGT	3 cut(s)	56, 79, 247
HpyCH4V	TGCA	2 cut(s)	193, 568
HpyF10VI	GCNNNNNNNGC	2 cut(s)	325, 334
HpyF3I	CTNAG	2 cut(s)	215, 312
Hsp92II	CATG	4 cut(s)	206, 400, 467, 498
Kzo9I	GATC	2 cut(s)	87, 279
LmnI	GCTCC	1 cut(s)	334
LpnPI	CCDG	7 cut(s)	320, 356, 462, 489, 500, 509, 536
Lsp1109I	GCAGC	3 cut(s)	19, 91, 219
LweI	GCATC	2 cut(s)	117, 315
MaeI	CTAG	1 cut(s)	164
MaeIII	GTNAC	4 cut(s)	37, 79, 205, 402
MalI	GATC	2 cut(s)	89, 281
MboI	GATC	2 cut(s)	87, 279
MboII	GAAGA	6 cut(s)	136, 181, 208, 442, 468, 496
MfeI	CAATTG	2 cut(s)	11, 43
MlsI	TGGCCA	1 cut(s)	298
MluCI	AATT	7 cut(s)	11, 43, 92, 340, 375, 459, 500
MluNI	TGGCCA	1 cut(s)	298
MnlI	CCTC	5 cut(s)	9, 148, 272, 520, 530
Mox20I	TGGCCA	1 cut(s)	298
MroXI	GAANNNNTTC	1 cut(s)	257
MscI	TGGCCA	1 cut(s)	298
MseI	TTAA	2 cut(s)	95, 134
MslI	CAYNNNNRTG	1 cut(s)	544
Msp20I	TGGCCA	1 cut(s)	298
MspR9I	CCNGG	2 cut(s)	477, 524
MunI	CAATTG	2 cut(s)	11, 43
MvaI	CCWGG	2 cut(s)	477, 524
MwoI	GCNNNNNNNGC	2 cut(s)	325, 334
NdeII	GATC	2 cut(s)	87, 279
NlaIII	CATG	4 cut(s)	206, 400, 467, 498
NlaIV	GGNNCC	2 cut(s)	260, 438
NmuCI	GTSAC	1 cut(s)	205
NspI	RCATGY	1 cut(s)	206
NspV	TTCGAA	1 cut(s)	507
PciI	ACATGT	1 cut(s)	202
PdmI	GAANNNNTTC	1 cut(s)	257
PfeI	GAWTC	1 cut(s)	158
PflMI	CCANNNNNTGG	1 cut(s)	446
PfoI	TCCNGGA	1 cut(s)	522
PkrI	GCNGC	3 cut(s)	9, 106, 234
PscI	ACATGT	1 cut(s)	202
Psp6I	CCWGG	2 cut(s)	475, 522
PspGI	CCWGG	2 cut(s)	475, 522
PspN4I	GGNNCC	2 cut(s)	260, 438
PspPI	GGNCC	1 cut(s)	517
RsaI	GTAC	2 cut(s)	418, 550
RsaNI	GTAC	2 cut(s)	417, 549
RseI	CAYNNNNRTG	1 cut(s)	544
SaqAI	TTAA	2 cut(s)	95, 134
SatI	GCNGC	3 cut(s)	8, 105, 233
Sau3AI	GATC	2 cut(s)	87, 279
Sau96I	GGNCC	1 cut(s)	517
ScrFI	CCNGG	2 cut(s)	477, 524
SetI	ASST	3 cut(s)	339, 478, 531
SfaNI	GCATC	2 cut(s)	117, 315
SfuI	TTCGAA	1 cut(s)	507
SinI	GGWCC	1 cut(s)	517
SmiMI	CAYNNNNRTG	1 cut(s)	544
SpeI	ACTAGT	1 cut(s)	163
Sse9I	AATT	7 cut(s)	11, 43, 92, 340, 375, 459, 500
SsiI	CCGC	2 cut(s)	107, 380
SspMI	CTAG	1 cut(s)	164
StyD4I	CCNGG	2 cut(s)	475, 522
TaaI	ACNGT	3 cut(s)	56, 79, 247
TaqI	TCGA	1 cut(s)	507
TasI	AATT	7 cut(s)	11, 43, 92, 340, 375, 459, 500
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	2 cut(s)	95, 134
Tru9I	TTAA	2 cut(s)	95, 134
TscAI	CASTG	1 cut(s)	59
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	3 cut(s)	7, 104, 232
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	2 cut(s)	266, 452
TspGWI	ACGGA	2 cut(s)	167, 434
TspRI	CASTG	1 cut(s)	59
Van91I	CCANNNNNTGG	1 cut(s)	446
VpaK11BI	GGWCC	1 cut(s)	517
XagI	CCTNNNNNAGG	1 cut(s)	524
XapI	RAATTY	3 cut(s)	340, 459, 500
XceI	RCATGY	1 cut(s)	206
XmnI	GAANNNNTTC	1 cut(s)	257
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.