Rh3AG064100

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0017406
Physical Location & Seq
Forward (+)
4417453 .. 4417800
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG064100.1

Sequence Viewer

Length: 348 bp
ATGGTTCCTCCCAATAGCGAAAATGATCTACTGAAGGCCGTGGCCAAGCAACCAGTCTCAGTTGCCATTGATGCCGATGGAGATGAATTTAGGGCATACGCAAGTGGAGTATTTTCTGGTAATTGCGGGACAAACCTAACCCATGCTGTTACAATAGTTGGTTACGGAACGACTGAAGAAGGCACCAACTATTGGTTAGTGAAGAATTCATGGGGCGAAACCTGGGGTGAAAAGGGCTACGTGAGAATTCTTCGAAATGCTGGTCCTCCAGGAGGTTTGTGTGGCATTGCTATGTACCCTTCTTATCCAACTGCATCAGCTATGGCACCCGCTCCCTCACCACTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

115

Amino Acids

12.07

Weight (kDa)

4.91

Isoelectric Point (pI)

33.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C1 PF00112 2 - 104 2.9e-33 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 182, 325
AccB7I CCANNNNNTGG 1 cut(s) 192
AccBSI CCGCTC 1 cut(s) 332
AciI CCGC 2 cut(s) 126, 330
AcoI YGGCCR 1 cut(s) 42
AcsI RAATTY 3 cut(s) 86, 205, 246
AcuI CTGAAG 2 cut(s) 53, 195
AfaI GTAC 1 cut(s) 296
AfiI CCNNNNNNNGG 2 cut(s) 192, 272
AjnI CCWGG 2 cut(s) 221, 268
AluBI AGCT 1 cut(s) 320
AluI AGCT 1 cut(s) 320
Alw26I GTCTC 1 cut(s) 61
AoxI GGCC 2 cut(s) 36, 42
ApoI RAATTY 3 cut(s) 86, 205, 246
ArsI GACNNNNNNTTYG 2 cut(s) 247, 279
AspS9I GGNCC 1 cut(s) 263
AsuHPI GGTGA 2 cut(s) 239, 330
AsuII TTCGAA 1 cut(s) 253
AvaII GGWCC 1 cut(s) 263
BalI TGGCCA 1 cut(s) 44
BanI GGYRCC 2 cut(s) 182, 325
BccI CCATC 1 cut(s) 71
BceAI ACGGC 1 cut(s) 23
BciT130I CCWGG 2 cut(s) 223, 270
BcoDI GTCTC 1 cut(s) 61
BfmI CTRYAG 1 cut(s) 344
Bme1390I CCNGG 2 cut(s) 223, 270
Bme18I GGWCC 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 3 cut(s) 6, 184, 327
BmrFI CCNGG 2 cut(s) 223, 270
BmsI GCATC 2 cut(s) 61, 323
BpmI CTGGAG 1 cut(s) 252
Bpu14I TTCGAA 1 cut(s) 253
BsaAI YACGTR 1 cut(s) 241
BsaJI CCNNGG 2 cut(s) 39, 222
Bsc4I CCNNNNNNNGG 2 cut(s) 192, 272
Bse1I ACTGG 1 cut(s) 53
Bse3DI GCAATG 1 cut(s) 285
BseBI CCWGG 2 cut(s) 223, 270
BseDI CCNNGG 2 cut(s) 39, 222
BseLI CCNNNNNNNGG 2 cut(s) 192, 272
BseMI GCAATG 1 cut(s) 285
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 1 cut(s) 53
BshFI GGCC 2 cut(s) 38, 44
BshNI GGYRCC 2 cut(s) 182, 325
BslFI GGGAC 1 cut(s) 142
BslI CCNNNNNNNGG 2 cut(s) 192, 272
BsmAI GTCTC 1 cut(s) 61
BsmFI GGGAC 1 cut(s) 142
BsnI GGCC 2 cut(s) 38, 44
Bsp119I TTCGAA 1 cut(s) 253
Bsp143I GATC 1 cut(s) 25
BspACI CCGC 2 cut(s) 126, 330
BspANI GGCC 2 cut(s) 38, 44
BspCNI CTCAG 1 cut(s) 71
BspLI GGNNCC 3 cut(s) 6, 184, 327
BspT104I TTCGAA 1 cut(s) 253
BspT107I GGYRCC 2 cut(s) 182, 325
BsrBI CCGCTC 1 cut(s) 332
BsrDI GCAATG 1 cut(s) 285
BsrI ACTGG 1 cut(s) 53
BssECI CCNNGG 2 cut(s) 39, 222
BssMI GATC 1 cut(s) 25
Bst2UI CCWGG 2 cut(s) 223, 270
Bst4CI ACNGT 1 cut(s) 345
BstBAI YACGTR 1 cut(s) 241
BstBI TTCGAA 1 cut(s) 253
BstDEI CTNAG 1 cut(s) 58
BstDSI CCRYGG 1 cut(s) 39
BstENI CCTNNNNNAGG 1 cut(s) 270
BstKTI GATC 1 cut(s) 28
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 1 cut(s) 25
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstNI CCWGG 2 cut(s) 223, 270
BstSCI CCNGG 2 cut(s) 221, 268
BstSFI CTRYAG 1 cut(s) 344
BsuRI GGCC 2 cut(s) 38, 44
BtgI CCRYGG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 341
Cfr13I GGNCC 1 cut(s) 263
Csp6I GTAC 1 cut(s) 295
CviAII CATG 2 cut(s) 143, 210
CviJI RGCY 4 cut(s) 38, 44, 237, 320
CviKI_1 RGCY 4 cut(s) 38, 44, 237, 320
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 1 cut(s) 58
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
EaeI YGGCCR 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 263
Eco57I CTGAAG 2 cut(s) 53, 195
EcoNI CCTNNNNNAGG 1 cut(s) 270
EcoRI GAATTC 2 cut(s) 205, 246
EcoRII CCWGG 2 cut(s) 221, 268
FaeI CATG 2 cut(s) 146, 213
FaiI YATR 5 cut(s) 97, 144, 211, 293, 323
FaqI GGGAC 1 cut(s) 142
FatI CATG 2 cut(s) 142, 209
FauI CCCGC 2 cut(s) 119, 337
GsuI CTGGAG 1 cut(s) 252
HaeIII GGCC 2 cut(s) 38, 44
Hin1II CATG 2 cut(s) 146, 213
HphI GGTGA 2 cut(s) 239, 330
HpyAV CCTTC 3 cut(s) 28, 173, 309
HpyCH4III ACNGT 1 cut(s) 345
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 1 cut(s) 314
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 1 cut(s) 58
HpySE526I ACGT 1 cut(s) 240
Hsp92II CATG 2 cut(s) 146, 213
Kzo9I GATC 1 cut(s) 25
LmnI GCTCC 1 cut(s) 337
LpnPI CCDG 7 cut(s) 66, 102, 208, 235, 246, 255, 282
LweI GCATC 2 cut(s) 61, 323
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 2 cut(s) 148, 161
MalI GATC 1 cut(s) 27
MbiI CCGCTC 1 cut(s) 332
MboI GATC 1 cut(s) 25
MboII GAAGA 3 cut(s) 188, 214, 242
MlsI TGGCCA 1 cut(s) 44
MluCI AATT 4 cut(s) 86, 121, 205, 246
MluNI TGGCCA 1 cut(s) 44
MmeI TCCRAC 1 cut(s) 332
MnlI CCTC 4 cut(s) 18, 266, 276, 346
Mox20I TGGCCA 1 cut(s) 44
MscI TGGCCA 1 cut(s) 44
MslI CAYNNNNRTG 1 cut(s) 290
Msp20I TGGCCA 1 cut(s) 44
MspR9I CCNGG 2 cut(s) 223, 270
MvaI CCWGG 2 cut(s) 223, 270
MwoI GCNNNNNNNGC 1 cut(s) 71
NdeII GATC 1 cut(s) 25
NlaIII CATG 2 cut(s) 146, 213
NlaIV GGNNCC 3 cut(s) 6, 184, 327
NspV TTCGAA 1 cut(s) 253
PflMI CCANNNNNTGG 1 cut(s) 192
PfoI TCCNGGA 1 cut(s) 268
Ppu21I YACGTR 1 cut(s) 241
Psp6I CCWGG 2 cut(s) 221, 268
PspGI CCWGG 2 cut(s) 221, 268
PspN4I GGNNCC 3 cut(s) 6, 184, 327
PspPI GGNCC 1 cut(s) 263
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
RseI CAYNNNNRTG 1 cut(s) 290
Sau3AI GATC 1 cut(s) 25
Sau96I GGNCC 1 cut(s) 263
ScrFI CCNGG 2 cut(s) 223, 270
SetI ASST 5 cut(s) 138, 224, 243, 277, 322
SfaNI GCATC 2 cut(s) 61, 323
SfcI CTRYAG 1 cut(s) 344
SfuI TTCGAA 1 cut(s) 253
SinI GGWCC 1 cut(s) 263
SmiMI CAYNNNNRTG 1 cut(s) 290
Sse9I AATT 4 cut(s) 86, 121, 205, 246
SsiI CCGC 2 cut(s) 126, 330
StyD4I CCNGG 2 cut(s) 221, 268
TaaI ACNGT 1 cut(s) 345
TaiI ACGT 1 cut(s) 243
TaqI TCGA 1 cut(s) 253
TasI AATT 4 cut(s) 86, 121, 205, 246
TscAI CASTG 1 cut(s) 348
TspDTI ATGAA 2 cut(s) 99, 198
TspGWI ACGGA 1 cut(s) 180
TspRI CASTG 1 cut(s) 348
Van91I CCANNNNNTGG 1 cut(s) 192
VpaK11BI GGWCC 1 cut(s) 263
XagI CCTNNNNNAGG 1 cut(s) 270
XapI RAATTY 3 cut(s) 86, 205, 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.