Rh5AG082800

Uncharacterised protein family UPF0052

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0017406
Physical Location & Seq
Forward (+)
7132051 .. 7132904
854 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG082800.1

Sequence Viewer

Length: 225 bp
ATGGTTGACAGCAAAGGGAGGGAGTTCAGACTTTACTTTGGTGGAGTCTTCTCTGGGGAATGTGGGACATCACTGGACCATTCTGTAACGGTCATCGGGTATGGGACGACTGAGGATGGCATCAAGTATTGGCTAGTGAAAAATTCAAGGGGTGAGCACTGGGGAGAGGGTGGCTACATGAGAATCCGCAGAGGGGTTGATGCTCCACAAGGTCCCGAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1 UPF0052

Protein Analysis

74

Amino Acids

8.21

Weight (kDa)

6.05

Isoelectric Point (pI)

29.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C1 PF00112 2 - 67 9e-20 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 187
AcsI RAATTY 2 cut(s) 142, 219
AfiI CCNNNNNNNGG 1 cut(s) 193
AgsI TTSAA 1 cut(s) 147
Alw21I GWGCWC 1 cut(s) 159
ApoI RAATTY 2 cut(s) 142, 219
AspS9I GGNCC 2 cut(s) 76, 212
AsuHPI GGTGA 1 cut(s) 164
AvaII GGWCC 2 cut(s) 76, 212
BbsI GAAGAC 1 cut(s) 40
Bbv12I GWGCWC 1 cut(s) 159
BccI CCATC 1 cut(s) 110
BfaI CTAG 1 cut(s) 134
Bme18I GGWCC 2 cut(s) 76, 212
BmgT120I GGNCC 2 cut(s) 76, 212
BmiI GGNNCC 1 cut(s) 214
BmrI ACTGGG 1 cut(s) 169
BmsI GCATC 2 cut(s) 129, 190
BmuI ACTGGG 1 cut(s) 169
BpiI GAAGAC 1 cut(s) 40
Bsc4I CCNNNNNNNGG 1 cut(s) 193
Bse1I ACTGG 2 cut(s) 78, 164
BseGI GGATG 1 cut(s) 121
BseLI CCNNNNNNNGG 1 cut(s) 193
BseMII CTCAG 1 cut(s) 102
BseNI ACTGG 2 cut(s) 78, 164
BsiHKAI GWGCWC 1 cut(s) 159
BslFI GGGAC 3 cut(s) 79, 118, 198
BslI CCNNNNNNNGG 1 cut(s) 193
BsmFI GGGAC 3 cut(s) 79, 118, 198
Bsp1286I GDGCHC 1 cut(s) 159
BspACI CCGC 1 cut(s) 187
BspCNI CTCAG 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 214
BsrI ACTGG 2 cut(s) 78, 164
Bst4CI ACNGT 1 cut(s) 91
BstDEI CTNAG 1 cut(s) 111
BstF5I GGATG 1 cut(s) 121
BstV2I GAAGAC 1 cut(s) 40
BtsCI GGATG 1 cut(s) 121
BtsIMutI CAGTG 2 cut(s) 71, 157
Cfr13I GGNCC 2 cut(s) 76, 212
CviAII CATG 1 cut(s) 178
CviJI RGCY 2 cut(s) 133, 174
CviKI_1 RGCY 2 cut(s) 133, 174
DdeI CTNAG 1 cut(s) 111
Eco47I GGWCC 2 cut(s) 76, 212
EcoO109I RGGNCCY 1 cut(s) 212
FaeI CATG 1 cut(s) 181
FaiI YATR 2 cut(s) 102, 179
FaqI GGGAC 3 cut(s) 79, 118, 198
FatI CATG 1 cut(s) 177
FokI GGATG 1 cut(s) 128
FspBI CTAG 1 cut(s) 134
Hin1II CATG 1 cut(s) 181
HincII GTYRAC 1 cut(s) 7
HindII GTYRAC 1 cut(s) 7
HinfI GANTC 2 cut(s) 45, 183
HphI GGTGA 1 cut(s) 164
Hpy166II GTNNAC 1 cut(s) 7
Hpy188I TCNGA 1 cut(s) 29
Hpy188III TCNNGA 1 cut(s) 215
Hpy8I GTNNAC 1 cut(s) 7
HpyCH4III ACNGT 1 cut(s) 91
HpyF3I CTNAG 1 cut(s) 111
Hsp92II CATG 1 cut(s) 181
LmnI GCTCC 1 cut(s) 208
LpnPI CCDG 3 cut(s) 39, 59, 145
LweI GCATC 2 cut(s) 129, 190
MaeI CTAG 1 cut(s) 134
MaeIII GTNAC 1 cut(s) 85
MboII GAAGA 1 cut(s) 40
MhlI GDGCHC 1 cut(s) 159
MluCI AATT 2 cut(s) 142, 219
MlyI GAGTC 1 cut(s) 54
MnlI CCTC 4 cut(s) 12, 106, 160, 185
NlaIII CATG 1 cut(s) 181
NlaIV GGNNCC 1 cut(s) 214
PfeI GAWTC 1 cut(s) 183
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
PpuMI RGGWCCY 1 cut(s) 212
Psp5II RGGWCCY 1 cut(s) 212
PspN4I GGNNCC 1 cut(s) 214
PspPI GGNCC 2 cut(s) 76, 212
PspPPI RGGWCCY 1 cut(s) 212
Sau96I GGNCC 2 cut(s) 76, 212
SchI GAGTC 1 cut(s) 54
SduI GDGCHC 1 cut(s) 159
SetI ASST 1 cut(s) 214
SfaNI GCATC 2 cut(s) 129, 190
SgeI CNNG 9 cut(s) 66, 86, 109, 136, 146, 159, 172, 190, 221
SinI GGWCC 2 cut(s) 76, 212
Sse9I AATT 2 cut(s) 142, 219
SsiI CCGC 1 cut(s) 187
SspMI CTAG 1 cut(s) 134
TaaI ACNGT 1 cut(s) 91
TasI AATT 2 cut(s) 142, 219
TfiI GAWTC 1 cut(s) 183
TscAI CASTG 2 cut(s) 78, 164
TspRI CASTG 2 cut(s) 78, 164
VpaK11BI GGWCC 2 cut(s) 76, 212
XapI RAATTY 2 cut(s) 142, 219
XspI CTAG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.