Rroxscaffold_1G00065760

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0017406
Physical Location & Seq
Reverse (-)
87346523 .. 87347600
1078 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00065760.1

Sequence Viewer

Length: 759 bp
ATGGTTTTGACACTTGAATGTCTGAAATCCATAATTGCCATTTTCGTCATAGTTCTTTTGGGGTCTACGGGTGCTGAATCCAAGACTGCGACTACGTTGAATGAAGCTTCCCTTACTACAAAACATGAGCTATGTATGGCTCGGTATAAACGCGTATACGCAGACAATCCAGAAAAGGAGAGACGTTTCAAGATATTCAAGTACAATGCGGGATACATCGACTTAACCGATGAAGAATTCTCGAGGGCTTATACTGGGTGCAAGAGGTCCATTCGTTCAGCAGGATCATTTAAAATGATCGATCCTATCAAGTACGAAAATCTGACTGATGTTCCAACCAGCATTGACTGGAGGGAGAAAGGAGCTGTTACCCCAGAAGTTGCTGGGCGTTTTCAGCAGTGGCAGCTGTGGAGGGGATTACGAAAATCAAATCTGCAGCTATGGTCACCTGGACAGTGCCTTGCTTACATAGCACATGCCGGCATTTCCAGTGAATCAAATTACCCATACACAGAAAAGGAAGGAACTTGTGACACTAACAAGACAAGGGATTATGCTGCCAAGATCACAAGCTATGCCATCGTTGATCTCAACAGCGAAACAGAATTATTAAATGTGGTTTCTAAGCAACCGGTCTCAGCAATGGTTGACAGCAAAGGGAGGGAGTTCAGACTCTACTCCGGTGGAGTCTTCTCTGGAGAATGTGGGACATCACTGGACCATTCTGTAACGGTCATTGGGTATGCATGGGACGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000323 GO:0000325 GO:0000932 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005788 GO:0005911 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010494 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030054 GO:0030154 GO:0030163 GO:0030312 GO:0031974 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034050 GO:0035770 GO:0036464 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0048046 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0061458 GO:0070011 GO:0070013 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1 Propeptide_C1

Protein Analysis

252

Amino Acids

28.26

Weight (kDa)

6.84

Isoelectric Point (pI)

38.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C1 PF00112 152 - 249 1.6e-19 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 65, 156
AccII CGCG 1 cut(s) 153
AciI CCGC 1 cut(s) 209
AclWI GGATC 2 cut(s) 292, 296
AcsI RAATTY 1 cut(s) 236
AfaI GTAC 2 cut(s) 203, 314
AflIII ACRYGT 1 cut(s) 151
AgeI ACCGGT 1 cut(s) 631
AgsI TTSAA 4 cut(s) 17, 100, 190, 199
AjnI CCWGG 1 cut(s) 448
AluBI AGCT 6 cut(s) 107, 130, 365, 406, 439, 573
AluI AGCT 6 cut(s) 107, 130, 365, 406, 439, 573
Alw26I GTCTC 2 cut(s) 175, 640
AlwI GGATC 2 cut(s) 292, 296
Ama87I CYCGRG 1 cut(s) 241
ApeKI GCWGC 3 cut(s) 403, 436, 557
ApoI RAATTY 1 cut(s) 236
AsiGI ACCGGT 1 cut(s) 631
AspS9I GGNCC 2 cut(s) 267, 718
AsuHPI GGTGA 1 cut(s) 438
AvaI CYCGRG 1 cut(s) 241
AvaII GGWCC 2 cut(s) 267, 718
BbsI GAAGAC 1 cut(s) 682
BbvI GCAGC 3 cut(s) 415, 448, 544
BccI CCATC 1 cut(s) 587
BciT130I CCWGG 1 cut(s) 450
BciVI GTATCC 1 cut(s) 206
BcoDI GTCTC 2 cut(s) 175, 640
BfmI CTRYAG 1 cut(s) 434
BfuI GTATCC 1 cut(s) 206
BisI GCNGC 3 cut(s) 404, 437, 558
BlsI GCNGC 3 cut(s) 405, 438, 559
Bme1390I CCNGG 1 cut(s) 450
Bme18I GGWCC 2 cut(s) 267, 718
BmeT110I CYCGRG 1 cut(s) 241
BmgT120I GGNCC 2 cut(s) 267, 718
BmrFI CCNGG 1 cut(s) 450
BmrI ACTGGG 1 cut(s) 264
BmuI ACTGGG 1 cut(s) 264
BpiI GAAGAC 1 cut(s) 682
BpmI CTGGAG 2 cut(s) 370, 717
Bsa29I ATCGAT 1 cut(s) 300
BsaI GGTCTC 1 cut(s) 640
BsaWI WCCGGW 2 cut(s) 631, 680
Bse118I RCCGGY 2 cut(s) 479, 631
Bse1I ACTGG 4 cut(s) 259, 353, 489, 720
Bse3DI GCAATG 1 cut(s) 648
BseBI CCWGG 1 cut(s) 450
BseCI ATCGAT 1 cut(s) 300
BseMI GCAATG 1 cut(s) 648
BseMII CTCAG 1 cut(s) 651
BseNI ACTGG 4 cut(s) 259, 353, 489, 720
BseXI GCAGC 3 cut(s) 415, 448, 544
BseYI CCCAGC 1 cut(s) 383
Bsh1236I CGCG 1 cut(s) 153
BshTI ACCGGT 1 cut(s) 631
BshVI ATCGAT 1 cut(s) 300
BsiHKCI CYCGRG 1 cut(s) 241
BsiSI CCGG 3 cut(s) 480, 632, 681
BslFI GGGAC 1 cut(s) 721
BsmAI GTCTC 2 cut(s) 175, 640
BsmBI CGTCTC 1 cut(s) 175
BsmFI GGGAC 1 cut(s) 721
Bso31I GGTCTC 1 cut(s) 640
BsoBI CYCGRG 1 cut(s) 241
Bsp143I GATC 5 cut(s) 284, 297, 301, 564, 586
BspACI CCGC 1 cut(s) 209
BspCNI CTCAG 1 cut(s) 650
BspDI ATCGAT 1 cut(s) 300
BspFNI CGCG 1 cut(s) 153
BspMAI CTGCAG 1 cut(s) 438
BspPI GGATC 2 cut(s) 292, 296
BspTNI GGTCTC 1 cut(s) 640
BsrDI GCAATG 1 cut(s) 648
BsrFI RCCGGY 2 cut(s) 479, 631
BsrI ACTGG 4 cut(s) 259, 353, 489, 720
BssAI RCCGGY 2 cut(s) 479, 631
BssMI GATC 5 cut(s) 284, 297, 301, 564, 586
BssNAI GTATAC 1 cut(s) 157
Bst1107I GTATAC 1 cut(s) 157
Bst2UI CCWGG 1 cut(s) 450
Bst4CI ACNGT 2 cut(s) 456, 733
BstC8I GCNNGC 1 cut(s) 481
BstDEI CTNAG 2 cut(s) 624, 637
BstEII GGTNACC 1 cut(s) 444
BstFNI CGCG 1 cut(s) 153
BstKTI GATC 5 cut(s) 287, 300, 304, 567, 589
BstMAI GTCTC 2 cut(s) 175, 640
BstMBI GATC 5 cut(s) 284, 297, 301, 564, 586
BstMWI GCNNNNNNNGC 3 cut(s) 394, 403, 470
BstNI CCWGG 1 cut(s) 450
BstNSI RCATGY 1 cut(s) 479
BstPI GGTNACC 1 cut(s) 444
BstSCI CCNGG 1 cut(s) 448
BstSFI CTRYAG 1 cut(s) 434
BstUI CGCG 1 cut(s) 153
BstV1I GCAGC 3 cut(s) 415, 448, 544
BstV2I GAAGAC 1 cut(s) 682
BstZ17I GTATAC 1 cut(s) 157
Bsu15I ATCGAT 1 cut(s) 300
BsuI GTATCC 1 cut(s) 206
BsuTUI ATCGAT 1 cut(s) 300
BtsI GCAGTG 1 cut(s) 404
BtsIMutI CAGTG 4 cut(s) 404, 461, 496, 713
Cac8I GCNNGC 1 cut(s) 481
Cfr10I RCCGGY 2 cut(s) 479, 631
Cfr13I GGNCC 2 cut(s) 267, 718
ClaI ATCGAT 1 cut(s) 300
Csp6I GTAC 2 cut(s) 202, 313
CspAI ACCGGT 1 cut(s) 631
CviAII CATG 3 cut(s) 125, 476, 747
CviJI RGCY 8 cut(s) 107, 130, 140, 248, 365, 406, 439, 573
CviKI_1 RGCY 8 cut(s) 107, 130, 140, 248, 365, 406, 439, 573
CviQI GTAC 2 cut(s) 202, 313
DdeI CTNAG 2 cut(s) 624, 637
DpnI GATC 5 cut(s) 286, 299, 303, 566, 588
DpnII GATC 5 cut(s) 284, 297, 301, 564, 586
DraI TTTAAA 1 cut(s) 292
Eco31I GGTCTC 1 cut(s) 640
Eco47I GGWCC 2 cut(s) 267, 718
Eco88I CYCGRG 1 cut(s) 241
Eco91I GGTNACC 1 cut(s) 444
EcoO65I GGTNACC 1 cut(s) 444
EcoRI GAATTC 1 cut(s) 236
EcoRII CCWGG 1 cut(s) 448
EcoT22I ATGCAT 1 cut(s) 748
Esp3I CGTCTC 1 cut(s) 175
FaeI CATG 3 cut(s) 128, 479, 750
FalI AAGNNNNNCTT 2 cut(s) 96, 128
FaqI GGGAC 1 cut(s) 721
FatI CATG 3 cut(s) 124, 475, 746
FauI CCCGC 1 cut(s) 202
FblI GTMKAC 2 cut(s) 65, 156
Fnu4HI GCNGC 3 cut(s) 404, 437, 558
Fsp4HI GCNGC 3 cut(s) 404, 437, 558
GluI GCNGC 3 cut(s) 404, 437, 558
GsaI CCCAGC 1 cut(s) 387
GsuI CTGGAG 2 cut(s) 370, 717
HapII CCGG 3 cut(s) 480, 632, 681
Hin1II CATG 3 cut(s) 128, 479, 750
HincII GTYRAC 1 cut(s) 649
HindII GTYRAC 1 cut(s) 649
HindIII AAGCTT 1 cut(s) 105
HinfI GANTC 4 cut(s) 77, 494, 672, 687
HpaII CCGG 3 cut(s) 480, 632, 681
HphI GGTGA 1 cut(s) 438
Hpy166II GTNNAC 3 cut(s) 66, 157, 649
Hpy188I TCNGA 3 cut(s) 24, 324, 671
Hpy188III TCNNGA 4 cut(s) 170, 190, 241, 696
Hpy8I GTNNAC 3 cut(s) 66, 157, 649
HpyAV CCTTC 1 cut(s) 515
HpyCH4III ACNGT 2 cut(s) 456, 733
HpyCH4IV ACGT 2 cut(s) 95, 184
HpyCH4V TGCA 3 cut(s) 261, 436, 746
HpyF10VI GCNNNNNNNGC 3 cut(s) 394, 403, 470
HpyF3I CTNAG 2 cut(s) 624, 637
HpySE526I ACGT 2 cut(s) 95, 184
Hsp92II CATG 3 cut(s) 128, 479, 750
KroI GCCGGC 1 cut(s) 479
KroNI GCCGGC 1 cut(s) 481
Kzo9I GATC 5 cut(s) 284, 297, 301, 564, 586
LmnI GCTCC 1 cut(s) 362
Lsp1109I GCAGC 3 cut(s) 415, 448, 544
MaeII ACGT 2 cut(s) 95, 184
MaeIII GTNAC 4 cut(s) 367, 444, 530, 727
MalI GATC 5 cut(s) 286, 299, 303, 566, 588
MboI GATC 5 cut(s) 284, 297, 301, 564, 586
MboII GAAGA 2 cut(s) 245, 682
MluCI AATT 4 cut(s) 33, 236, 499, 605
MluI ACGCGT 1 cut(s) 151
MlyI GAGTC 2 cut(s) 666, 696
MmeI TCCRAC 1 cut(s) 359
MnlI CCTC 5 cut(s) 237, 258, 345, 405, 654
Mph1103I ATGCAT 1 cut(s) 748
MroNI GCCGGC 1 cut(s) 479
MseI TTAA 3 cut(s) 224, 291, 611
MslI CAYNNNNRTG 1 cut(s) 16
MspA1I CMGCKG 1 cut(s) 406
MspI CCGG 3 cut(s) 480, 632, 681
MspR9I CCNGG 1 cut(s) 450
MvaI CCWGG 1 cut(s) 450
MvnI CGCG 1 cut(s) 153
MwoI GCNNNNNNNGC 3 cut(s) 394, 403, 470
NaeI GCCGGC 1 cut(s) 481
NdeII GATC 5 cut(s) 284, 297, 301, 564, 586
NgoMIV GCCGGC 1 cut(s) 479
NlaIII CATG 3 cut(s) 128, 479, 750
NmuCI GTSAC 2 cut(s) 444, 530
NsiI ATGCAT 1 cut(s) 748
NspI RCATGY 1 cut(s) 479
PaeR7I CTCGAG 1 cut(s) 241
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PdiI GCCGGC 1 cut(s) 481
PfeI GAWTC 2 cut(s) 77, 494
PinAI ACCGGT 1 cut(s) 631
PkrI GCNGC 3 cut(s) 405, 438, 559
PleI GAGTC 2 cut(s) 666, 695
PpsI GAGTC 2 cut(s) 666, 695
Psp6I CCWGG 1 cut(s) 448
PspEI GGTNACC 1 cut(s) 444
PspFI CCCAGC 1 cut(s) 383
PspGI CCWGG 1 cut(s) 448
PspPI GGNCC 2 cut(s) 267, 718
PstI CTGCAG 1 cut(s) 438
PvuII CAGCTG 1 cut(s) 406
RsaI GTAC 2 cut(s) 203, 314
RsaNI GTAC 2 cut(s) 202, 313
RseI CAYNNNNRTG 1 cut(s) 16
SaqAI TTAA 3 cut(s) 224, 291, 611
SatI GCNGC 3 cut(s) 404, 437, 558
Sau3AI GATC 5 cut(s) 284, 297, 301, 564, 586
Sau96I GGNCC 2 cut(s) 267, 718
SchI GAGTC 2 cut(s) 666, 696
ScrFI CCNGG 1 cut(s) 450
SfcI CTRYAG 1 cut(s) 434
Sfr274I CTCGAG 1 cut(s) 241
SinI GGWCC 2 cut(s) 267, 718
SlaI CTCGAG 1 cut(s) 241
SmiMI CAYNNNNRTG 1 cut(s) 16
SmlI CTYRAG 1 cut(s) 241
SmoI CTYRAG 1 cut(s) 241
Sse9I AATT 4 cut(s) 33, 236, 499, 605
SsiI CCGC 1 cut(s) 209
StyD4I CCNGG 1 cut(s) 448
TaaI ACNGT 2 cut(s) 456, 733
TaiI ACGT 2 cut(s) 98, 187
TaqI TCGA 3 cut(s) 219, 242, 300
TasI AATT 4 cut(s) 33, 236, 499, 605
TatI WGTACW 1 cut(s) 201
TfiI GAWTC 2 cut(s) 77, 494
Tru1I TTAA 3 cut(s) 224, 291, 611
Tru9I TTAA 3 cut(s) 224, 291, 611
TscAI CASTG 4 cut(s) 404, 461, 496, 720
TseFI GTSAC 2 cut(s) 444, 530
TseI GCWGC 3 cut(s) 403, 436, 557
Tsp45I GTSAC 2 cut(s) 444, 530
TspDTI ATGAA 2 cut(s) 117, 246
TspRI CASTG 4 cut(s) 404, 461, 496, 720
VpaK11BI GGWCC 2 cut(s) 267, 718
XapI RAATTY 1 cut(s) 236
XceI RCATGY 1 cut(s) 479
XhoI CTCGAG 1 cut(s) 241
XmiI GTMKAC 2 cut(s) 65, 156
Zsp2I ATGCAT 1 cut(s) 748
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.