RLG00000031765

Uncharacterised protein family UPF0052

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0017406
Physical Location & Seq
Forward (+)
8108654 .. 8109536
883 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031765

Sequence Viewer

Length: 507 bp
ATGAACCAAATCAGCTCCAGCACCAACATCTGCGGGCTTCCCTACGCTTGGATCAAAAACTCTTGCAAGCAGGTCCAGCAACGCCCTCTACATGATGTTCTCGTACGACAACTACGGCAACGACACCGGCCACTCAGCTCAGCCAAAGACGGAGCGAGACGGATTCTAGGAGCGACGGTCGGGTTCTGGTTTCTCGGGCTGTGTGCCGAAGAATCTGAAGGCGAACGTGACTGCAACAAGTCTCAGCAATGGTTGACAGCAAAGGGCCGGAGGGAGTTCAGCCTTTACTTCGGTGGAGTCTTCTCTGGAGAATGTGGGGCATCACTGGACCATTCTGTAACCCTCATCGGGCATGGGACGACTGAGGATGGCATCAAGTATTGGCTAGTGAAAAATTCATGGGGTGAGCACTGGGGAGAGATTGGCTACATGAGAATCCGCAGAGGGGTTGATGCTCCACAAGGTCTTTGTGGTATTGCTATGCAACCTTTATATCCGATTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1 UPF0052

Protein Analysis

169

Amino Acids

18.84

Weight (kDa)

8.98

Isoelectric Point (pI)

48.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C1 PF00112 90 - 167 1.5e-22 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 61
AciI CCGC 2 cut(s) 33, 439
AclWI GGATC 1 cut(s) 59
AcoI YGGCCR 1 cut(s) 128
AcsI RAATTY 1 cut(s) 394
AcuI CTGAAG 1 cut(s) 237
AfaI GTAC 1 cut(s) 105
AfiI CCNNNNNNNGG 3 cut(s) 48, 348, 445
AluBI AGCT 2 cut(s) 15, 138
AluI AGCT 2 cut(s) 15, 138
Alw21I GWGCWC 1 cut(s) 411
Alw26I GTCTC 2 cut(s) 151, 246
AlwI GGATC 1 cut(s) 59
Ama87I CYCGRG 1 cut(s) 194
AoxI GGCC 2 cut(s) 128, 265
ApoI RAATTY 1 cut(s) 394
AspS9I GGNCC 3 cut(s) 73, 265, 328
AsuHPI GGTGA 1 cut(s) 416
AvaI CYCGRG 1 cut(s) 194
AvaII GGWCC 2 cut(s) 73, 328
BbsI GAAGAC 1 cut(s) 292
Bbv12I GWGCWC 1 cut(s) 411
BccI CCATC 1 cut(s) 362
BceAI ACGGC 1 cut(s) 131
BcoDI GTCTC 2 cut(s) 151, 246
BfaI CTAG 2 cut(s) 167, 386
BfuAI ACCTGC 1 cut(s) 61
BlpI GCTNAGC 1 cut(s) 139
Bme18I GGWCC 2 cut(s) 73, 328
BmeT110I CYCGRG 1 cut(s) 194
BmgT120I GGNCC 3 cut(s) 73, 265, 328
BmrI ACTGGG 1 cut(s) 421
BmsI GCATC 3 cut(s) 329, 381, 442
BmuI ACTGGG 1 cut(s) 421
BpiI GAAGAC 1 cut(s) 292
BpmI CTGGAG 1 cut(s) 327
Bpu1102I GCTNAGC 1 cut(s) 139
BsaXI ACNNNNNCTCC 2 cut(s) 162, 192
Bsc4I CCNNNNNNNGG 3 cut(s) 48, 348, 445
Bse118I RCCGGY 1 cut(s) 126
Bse1I ACTGG 2 cut(s) 330, 416
Bse3DI GCAATG 1 cut(s) 254
BseGI GGATG 1 cut(s) 373
BseLI CCNNNNNNNGG 3 cut(s) 48, 348, 445
BseMI GCAATG 1 cut(s) 254
BseMII CTCAG 4 cut(s) 148, 153, 257, 354
BseNI ACTGG 2 cut(s) 330, 416
Bsh1285I CGRYCG 1 cut(s) 180
BshFI GGCC 2 cut(s) 130, 267
BsiEI CGRYCG 1 cut(s) 180
BsiHKAI GWGCWC 1 cut(s) 411
BsiHKCI CYCGRG 1 cut(s) 194
BsiSI CCGG 2 cut(s) 127, 268
BsiWI CGTACG 1 cut(s) 103
BslFI GGGAC 1 cut(s) 370
BslI CCNNNNNNNGG 3 cut(s) 48, 348, 445
BsmAI GTCTC 2 cut(s) 151, 246
BsmBI CGTCTC 1 cut(s) 151
BsmFI GGGAC 1 cut(s) 370
BsnI GGCC 2 cut(s) 130, 267
BsoBI CYCGRG 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 411
Bsp143I GATC 1 cut(s) 51
Bsp1720I GCTNAGC 1 cut(s) 139
BspACI CCGC 2 cut(s) 33, 439
BspANI GGCC 2 cut(s) 130, 267
BspCNI CTCAG 4 cut(s) 147, 152, 256, 355
BspMI ACCTGC 1 cut(s) 61
BspPI GGATC 1 cut(s) 59
BsrDI GCAATG 1 cut(s) 254
BsrFI RCCGGY 1 cut(s) 126
BsrI ACTGG 2 cut(s) 330, 416
BssAI RCCGGY 1 cut(s) 126
BssMI GATC 1 cut(s) 51
Bst4CI ACNGT 1 cut(s) 178
BstC8I GCNNGC 2 cut(s) 35, 68
BstDEI CTNAG 4 cut(s) 134, 139, 243, 363
BstF5I GGATG 1 cut(s) 373
BstKTI GATC 1 cut(s) 54
BstMAI GTCTC 2 cut(s) 151, 246
BstMBI GATC 1 cut(s) 51
BstMCI CGRYCG 1 cut(s) 180
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstV2I GAAGAC 1 cut(s) 292
BsuRI GGCC 2 cut(s) 130, 267
BtsCI GGATG 1 cut(s) 373
BtsIMutI CAGTG 2 cut(s) 323, 409
BveI ACCTGC 1 cut(s) 61
Cac8I GCNNGC 2 cut(s) 35, 68
Cfr10I RCCGGY 1 cut(s) 126
Cfr13I GGNCC 3 cut(s) 73, 265, 328
Csp6I GTAC 1 cut(s) 104
CviAII CATG 4 cut(s) 92, 353, 399, 430
CviQI GTAC 1 cut(s) 104
DdeI CTNAG 4 cut(s) 134, 139, 243, 363
DpnI GATC 1 cut(s) 53
DpnII GATC 1 cut(s) 51
EaeI YGGCCR 1 cut(s) 128
Eco47I GGWCC 2 cut(s) 73, 328
Eco57I CTGAAG 1 cut(s) 237
Eco88I CYCGRG 1 cut(s) 194
Esp3I CGTCTC 1 cut(s) 151
FaeI CATG 4 cut(s) 95, 356, 402, 433
FaiI YATR 6 cut(s) 93, 354, 400, 431, 482, 493
FaqI GGGAC 1 cut(s) 370
FatI CATG 4 cut(s) 91, 352, 398, 429
FauI CCCGC 1 cut(s) 26
FokI GGATG 1 cut(s) 380
FspBI CTAG 2 cut(s) 167, 386
GsuI CTGGAG 1 cut(s) 327
HaeIII GGCC 2 cut(s) 130, 267
HapII CCGG 2 cut(s) 127, 268
Hin1II CATG 4 cut(s) 95, 356, 402, 433
HincII GTYRAC 1 cut(s) 255
HindII GTYRAC 1 cut(s) 255
HinfI GANTC 4 cut(s) 163, 212, 297, 435
HpaII CCGG 2 cut(s) 127, 268
HphI GGTGA 1 cut(s) 416
Hpy166II GTNNAC 1 cut(s) 255
Hpy188I TCNGA 2 cut(s) 217, 498
Hpy188III TCNNGA 1 cut(s) 306
Hpy8I GTNNAC 1 cut(s) 255
Hpy99I CGWCG 1 cut(s) 178
HpyAV CCTTC 1 cut(s) 212
HpyCH4III ACNGT 1 cut(s) 178
HpyCH4IV ACGT 1 cut(s) 226
HpyCH4V TGCA 3 cut(s) 66, 234, 484
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
HpyF3I CTNAG 4 cut(s) 134, 139, 243, 363
HpySE526I ACGT 1 cut(s) 226
Hsp92II CATG 4 cut(s) 95, 356, 402, 433
Kzo9I GATC 1 cut(s) 51
LmnI GCTCC 4 cut(s) 20, 152, 170, 460
LpnPI CCDG 9 cut(s) 31, 56, 89, 140, 172, 281, 291, 311, 397
LweI GCATC 3 cut(s) 329, 381, 442
MaeI CTAG 2 cut(s) 167, 386
MaeII ACGT 1 cut(s) 226
MaeIII GTNAC 2 cut(s) 227, 337
MalI GATC 1 cut(s) 53
MboI GATC 1 cut(s) 51
MboII GAAGA 2 cut(s) 221, 292
MhlI GDGCHC 1 cut(s) 411
MluCI AATT 1 cut(s) 394
MlyI GAGTC 1 cut(s) 306
MnlI CCTC 5 cut(s) 96, 264, 353, 358, 437
MseI TTAA 1 cut(s) 505
MspI CCGG 2 cut(s) 127, 268
MwoI GCNNNNNNNGC 1 cut(s) 76
NdeII GATC 1 cut(s) 51
NlaIII CATG 4 cut(s) 95, 356, 402, 433
NmuCI GTSAC 1 cut(s) 227
PfeI GAWTC 3 cut(s) 163, 212, 435
Pfl23II CGTACG 1 cut(s) 103
PleI GAGTC 1 cut(s) 305
PpsI GAGTC 1 cut(s) 305
PspLI CGTACG 1 cut(s) 103
PspPI GGNCC 3 cut(s) 73, 265, 328
RsaI GTAC 1 cut(s) 105
RsaNI GTAC 1 cut(s) 104
SaqAI TTAA 1 cut(s) 505
Sau3AI GATC 1 cut(s) 51
Sau96I GGNCC 3 cut(s) 73, 265, 328
SchI GAGTC 1 cut(s) 306
SduI GDGCHC 1 cut(s) 411
SetI ASST 6 cut(s) 17, 75, 140, 229, 466, 490
SfaNI GCATC 3 cut(s) 329, 381, 442
SinI GGWCC 2 cut(s) 73, 328
Sse9I AATT 1 cut(s) 394
SsiI CCGC 2 cut(s) 33, 439
SspMI CTAG 2 cut(s) 167, 386
TaaI ACNGT 1 cut(s) 178
TaiI ACGT 1 cut(s) 229
TasI AATT 1 cut(s) 394
TfiI GAWTC 3 cut(s) 163, 212, 435
Tru1I TTAA 1 cut(s) 505
Tru9I TTAA 1 cut(s) 505
TscAI CASTG 2 cut(s) 330, 416
TseFI GTSAC 1 cut(s) 227
Tsp45I GTSAC 1 cut(s) 227
TspDTI ATGAA 2 cut(s) 17, 387
TspGWI ACGGA 2 cut(s) 165, 175
TspRI CASTG 2 cut(s) 330, 416
VpaK11BI GGWCC 2 cut(s) 73, 328
XapI RAATTY 1 cut(s) 394
XspI CTAG 2 cut(s) 167, 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.