Rh3AG064300

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0017406
Physical Location & Seq
Forward (+)
4449933 .. 4460014
10082 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG064300.1

Sequence Viewer

Length: 702 bp
ATGAAAGAGAAAGATTATTGCCTTCATGGCCCGACACCCTTGTGGCGGCTGGCGCTCCACCATATTTGGCAACTACATCATTGGAGGCACCGTTCTTGTTGGGCATTTTCAGCAGTGGCAACAATTGAGGGCATTACCAAAATCAAAAGTAACCAATTGATTTCACTGTCCGAGCAACAACTTGTGGACTGTAACAGAGGTCAAATTAACAAGGGCTGCGGTGGTGGTAATATGGAAGATGCTTTTAAATACATAAATGACAACGGAGGAATCACTAGTGAAGAAAACTACCAATACAAGGGTGCAGAAGAGACATGTGACACTACTAAGACGACTGAATATGCTGCCAAGATAAATGGTTATGAAATGGTTCCTCCCAATAGTGAAAATGATCTACTAAAGGCCGTGGCCAAGCAACCAGTCTCAGTCGCCCTTGATGCCGATGGAGATGAATTTAGGGCATACGCAAGTGGGGTATTTTCTGGTAATTGCGGGACAAACCTAACCCATGCTGTTACAATCGTTGGGTACGGAACGACTGAAGAAGGCACCAACTATTGGTTAGTGAAGAATTCATGGGGTGAAAAGGGCTACATGAGAATTCTTCGAAATGCTGGTCCTCCAGGAGGTTTGTGTGGCATTGCTATGTACCCTTCTTATCCAACTGCATCAGCTATGGCACCCGCTCCCTCATCACTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

233

Amino Acids

25.51

Weight (kDa)

5.97

Isoelectric Point (pI)

37.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C1 PF00112 32 - 222 1.2e-63 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 87, 548, 679
AccB7I CCANNNNNTGG 1 cut(s) 558
AccBSI CCGCTC 1 cut(s) 686
AciI CCGC 4 cut(s) 46, 219, 492, 684
AcoI YGGCCR 1 cut(s) 408
AcsI RAATTY 3 cut(s) 452, 571, 600
AcuI CTGAAG 1 cut(s) 561
AfaI GTAC 2 cut(s) 530, 650
AfiI CCNNNNNNNGG 4 cut(s) 45, 298, 558, 626
AflIII ACRYGT 1 cut(s) 314
AhlI ACTAGT 1 cut(s) 275
AjnI CCWGG 1 cut(s) 622
AleI CACNNNNGTG 1 cut(s) 40
AloI GAACNNNNNNTCC 2 cut(s) 76, 108
AluBI AGCT 1 cut(s) 674
AluI AGCT 1 cut(s) 674
Alw26I GTCTC 2 cut(s) 305, 427
AoxI GGCC 3 cut(s) 28, 402, 408
ApeKI GCWGC 2 cut(s) 216, 344
ApoI RAATTY 3 cut(s) 452, 571, 600
ArsI GACNNNNNNTTYG 2 cut(s) 601, 633
Asp700I GAANNNNTTC 1 cut(s) 369
AspLEI GCGC 1 cut(s) 55
AspS9I GGNCC 2 cut(s) 29, 617
AsuHPI GGTGA 1 cut(s) 593
AsuII TTCGAA 1 cut(s) 607
AvaII GGWCC 1 cut(s) 617
BalI TGGCCA 1 cut(s) 410
BanI GGYRCC 3 cut(s) 87, 548, 679
BbvI GCAGC 2 cut(s) 203, 331
BccI CCATC 1 cut(s) 437
BceAI ACGGC 1 cut(s) 389
BciT130I CCWGG 1 cut(s) 624
BcoDI GTCTC 2 cut(s) 305, 427
BcuI ACTAGT 1 cut(s) 275
BfaI CTAG 1 cut(s) 276
BfmI CTRYAG 1 cut(s) 698
BfoI RGCGCY 1 cut(s) 56
BglI GCCNNNNNGGC 1 cut(s) 27
BisI GCNGC 3 cut(s) 47, 217, 345
BlsI GCNGC 3 cut(s) 48, 218, 346
Bme1390I CCNGG 1 cut(s) 624
Bme18I GGWCC 1 cut(s) 617
BmgT120I GGNCC 2 cut(s) 29, 617
BmiI GGNNCC 4 cut(s) 89, 372, 550, 681
BmrFI CCNGG 1 cut(s) 624
BmsI GCATC 3 cut(s) 229, 427, 677
BpmI CTGGAG 1 cut(s) 606
Bpu14I TTCGAA 1 cut(s) 607
BsaJI CCNNGG 1 cut(s) 405
BsaXI ACNNNNNCTCC 2 cut(s) 76, 106
Bsc4I CCNNNNNNNGG 4 cut(s) 45, 298, 558, 626
Bse1I ACTGG 1 cut(s) 419
Bse3DI GCAATG 1 cut(s) 639
BseBI CCWGG 1 cut(s) 624
BseDI CCNNGG 1 cut(s) 405
BseLI CCNNNNNNNGG 4 cut(s) 45, 298, 558, 626
BseMI GCAATG 1 cut(s) 639
BseMII CTCAG 1 cut(s) 438
BseNI ACTGG 1 cut(s) 419
BseXI GCAGC 2 cut(s) 203, 331
BsgI GTGCAG 1 cut(s) 324
BshFI GGCC 3 cut(s) 30, 404, 410
BshNI GGYRCC 3 cut(s) 87, 548, 679
BslFI GGGAC 1 cut(s) 508
BslI CCNNNNNNNGG 4 cut(s) 45, 298, 558, 626
BsmAI GTCTC 2 cut(s) 305, 427
BsmFI GGGAC 1 cut(s) 508
BsnI GGCC 3 cut(s) 30, 404, 410
Bsp119I TTCGAA 1 cut(s) 607
Bsp143I GATC 1 cut(s) 391
BspACI CCGC 4 cut(s) 46, 219, 492, 684
BspANI GGCC 3 cut(s) 30, 404, 410
BspCNI CTCAG 1 cut(s) 437
BspLI GGNNCC 4 cut(s) 89, 372, 550, 681
BspT104I TTCGAA 1 cut(s) 607
BspT107I GGYRCC 3 cut(s) 87, 548, 679
BsrBI CCGCTC 1 cut(s) 686
BsrDI GCAATG 1 cut(s) 639
BsrI ACTGG 1 cut(s) 419
BssECI CCNNGG 1 cut(s) 405
BssMI GATC 1 cut(s) 391
Bst2UI CCWGG 1 cut(s) 624
Bst4CI ACNGT 4 cut(s) 92, 168, 191, 699
Bst6I CTCTTC 1 cut(s) 303
BstBI TTCGAA 1 cut(s) 607
BstC8I GCNNGC 1 cut(s) 51
BstDEI CTNAG 2 cut(s) 327, 424
BstDSI CCRYGG 1 cut(s) 405
BstENI CCTNNNNNAGG 1 cut(s) 624
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 1 cut(s) 55
BstKTI GATC 1 cut(s) 394
BstMAI GTCTC 2 cut(s) 305, 427
BstMBI GATC 1 cut(s) 391
BstMWI GCNNNNNNNGC 4 cut(s) 27, 52, 110, 437
BstNI CCWGG 1 cut(s) 624
BstNSI RCATGY 1 cut(s) 318
BstSCI CCNGG 1 cut(s) 622
BstSFI CTRYAG 1 cut(s) 698
BstV1I GCAGC 2 cut(s) 203, 331
BsuRI GGCC 3 cut(s) 30, 404, 410
BtgI CCRYGG 1 cut(s) 405
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 3 cut(s) 120, 164, 695
Cac8I GCNNGC 1 cut(s) 51
CfoI GCGC 1 cut(s) 55
Cfr13I GGNCC 2 cut(s) 29, 617
Csp6I GTAC 2 cut(s) 529, 649
CspCI CAANNNNNGTGG 2 cut(s) 47, 82
CviAII CATG 5 cut(s) 26, 315, 509, 576, 595
CviJI RGCY 7 cut(s) 30, 49, 216, 404, 410, 591, 674
CviKI_1 RGCY 7 cut(s) 30, 49, 216, 404, 410, 591, 674
CviQI GTAC 2 cut(s) 529, 649
DdeI CTNAG 2 cut(s) 327, 424
DpnI GATC 1 cut(s) 393
DpnII GATC 1 cut(s) 391
DraI TTTAAA 1 cut(s) 247
EaeI YGGCCR 1 cut(s) 408
Eam1104I CTCTTC 1 cut(s) 303
EarI CTCTTC 1 cut(s) 303
Eco47I GGWCC 1 cut(s) 617
Eco57I CTGAAG 1 cut(s) 561
EcoNI CCTNNNNNAGG 1 cut(s) 624
EcoRI GAATTC 2 cut(s) 571, 600
EcoRII CCWGG 1 cut(s) 622
FaeI CATG 5 cut(s) 29, 318, 512, 579, 598
FaqI GGGAC 1 cut(s) 508
FatI CATG 5 cut(s) 25, 314, 508, 575, 594
FauI CCCGC 2 cut(s) 485, 691
Fnu4HI GCNGC 3 cut(s) 47, 217, 345
Fsp4HI GCNGC 3 cut(s) 47, 217, 345
FspBI CTAG 1 cut(s) 276
GlaI GCGC 1 cut(s) 54
GluI GCNGC 3 cut(s) 47, 217, 345
GsuI CTGGAG 1 cut(s) 606
HaeII RGCGCY 1 cut(s) 56
HaeIII GGCC 3 cut(s) 30, 404, 410
HhaI GCGC 1 cut(s) 55
Hin1II CATG 5 cut(s) 29, 318, 512, 579, 598
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HinfI GANTC 1 cut(s) 270
HphI GGTGA 1 cut(s) 593
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 1 cut(s) 172
Hpy8I GTNNAC 1 cut(s) 187
HpyAV CCTTC 3 cut(s) 32, 539, 663
HpyCH4III ACNGT 4 cut(s) 92, 168, 191, 699
HpyCH4V TGCA 2 cut(s) 305, 668
HpyF10VI GCNNNNNNNGC 4 cut(s) 27, 52, 110, 437
HpyF3I CTNAG 2 cut(s) 327, 424
Hsp92II CATG 5 cut(s) 29, 318, 512, 579, 598
HspAI GCGC 1 cut(s) 53
Kzo9I GATC 1 cut(s) 391
LmnI GCTCC 2 cut(s) 60, 691
LpnPI CCDG 6 cut(s) 35, 432, 468, 600, 609, 636
Lsp1109I GCAGC 2 cut(s) 203, 331
LweI GCATC 3 cut(s) 229, 427, 677
MaeI CTAG 1 cut(s) 276
MaeIII GTNAC 4 cut(s) 149, 191, 317, 514
MalI GATC 1 cut(s) 393
MbiI CCGCTC 1 cut(s) 686
MboI GATC 1 cut(s) 391
MboII GAAGA 6 cut(s) 248, 293, 320, 554, 580, 596
MfeI CAATTG 2 cut(s) 123, 155
MlsI TGGCCA 1 cut(s) 410
MluCI AATT 7 cut(s) 123, 155, 204, 452, 487, 571, 600
MluNI TGGCCA 1 cut(s) 410
MmeI TCCRAC 1 cut(s) 686
MnlI CCTC 8 cut(s) 78, 121, 191, 260, 384, 620, 630, 700
Mox20I TGGCCA 1 cut(s) 410
MroXI GAANNNNTTC 1 cut(s) 369
MscI TGGCCA 1 cut(s) 410
MseI TTAA 2 cut(s) 207, 246
MslI CAYNNNNRTG 2 cut(s) 40, 644
Msp20I TGGCCA 1 cut(s) 410
MspR9I CCNGG 1 cut(s) 624
MunI CAATTG 2 cut(s) 123, 155
MvaI CCWGG 1 cut(s) 624
MwoI GCNNNNNNNGC 4 cut(s) 27, 52, 110, 437
NdeII GATC 1 cut(s) 391
NlaIII CATG 5 cut(s) 29, 318, 512, 579, 598
NlaIV GGNNCC 4 cut(s) 89, 372, 550, 681
NmuCI GTSAC 1 cut(s) 317
NspI RCATGY 1 cut(s) 318
NspV TTCGAA 1 cut(s) 607
OliI CACNNNNGTG 1 cut(s) 40
PciI ACATGT 1 cut(s) 314
PdmI GAANNNNTTC 1 cut(s) 369
PfeI GAWTC 1 cut(s) 270
PflMI CCANNNNNTGG 1 cut(s) 558
PfoI TCCNGGA 1 cut(s) 622
PkrI GCNGC 3 cut(s) 48, 218, 346
PscI ACATGT 1 cut(s) 314
Psp6I CCWGG 1 cut(s) 622
PspGI CCWGG 1 cut(s) 622
PspN4I GGNNCC 4 cut(s) 89, 372, 550, 681
PspPI GGNCC 2 cut(s) 29, 617
RsaI GTAC 2 cut(s) 530, 650
RsaNI GTAC 2 cut(s) 529, 649
RseI CAYNNNNRTG 2 cut(s) 40, 644
SaqAI TTAA 2 cut(s) 207, 246
SatI GCNGC 3 cut(s) 47, 217, 345
Sau3AI GATC 1 cut(s) 391
Sau96I GGNCC 2 cut(s) 29, 617
ScrFI CCNGG 1 cut(s) 624
SetI ASST 4 cut(s) 202, 504, 631, 676
SfaNI GCATC 3 cut(s) 229, 427, 677
SfcI CTRYAG 1 cut(s) 698
SfuI TTCGAA 1 cut(s) 607
SinI GGWCC 1 cut(s) 617
SmiMI CAYNNNNRTG 2 cut(s) 40, 644
SpeI ACTAGT 1 cut(s) 275
Sse9I AATT 7 cut(s) 123, 155, 204, 452, 487, 571, 600
SsiI CCGC 4 cut(s) 46, 219, 492, 684
SspMI CTAG 1 cut(s) 276
StyD4I CCNGG 1 cut(s) 622
TaaI ACNGT 4 cut(s) 92, 168, 191, 699
TaqI TCGA 1 cut(s) 607
TasI AATT 7 cut(s) 123, 155, 204, 452, 487, 571, 600
TauI GCSGC 1 cut(s) 49
TfiI GAWTC 1 cut(s) 270
Tru1I TTAA 2 cut(s) 207, 246
Tru9I TTAA 2 cut(s) 207, 246
TscAI CASTG 3 cut(s) 120, 171, 702
TseFI GTSAC 1 cut(s) 317
TseI GCWGC 2 cut(s) 216, 344
Tsp45I GTSAC 1 cut(s) 317
TspDTI ATGAA 5 cut(s) 14, 17, 378, 465, 564
TspGWI ACGGA 2 cut(s) 279, 546
TspRI CASTG 3 cut(s) 120, 171, 702
Van91I CCANNNNNTGG 1 cut(s) 558
VpaK11BI GGWCC 1 cut(s) 617
XagI CCTNNNNNAGG 1 cut(s) 624
XapI RAATTY 3 cut(s) 452, 571, 600
XceI RCATGY 1 cut(s) 318
XmnI GAANNNNTTC 1 cut(s) 369
XspI CTAG 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.