RchiOBHm_Chr5g0010611

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0017406
Physical Location & Seq
Forward (+)
7007765 .. 7008091
327 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29134

Sequence Viewer

Length: 327 bp
ATGCCATCGTACGTTGATCTTAACAGCGAGACAGAATTATTAAATGTGGTTTCTAAGCAACCGGTCTCAGCAATGGCTGACAGCAAAGGGAGGGAGTTCAGACTTTACTTTGGTGGAGTCTTCTCTGGGGAATGTGGGACATCACCGGACCATTCTGTAACGGTCATCGGGTATGGGACGACTGAGGATGGCATCAAGTATTGGCTAGTGAAAAATTCATGGGGTGAGCACTGGGGAGAGGGTGGCTATATGAGAATCCGCAGAGGGGTTGATGCTCCACAAGGTCTTTGTGGTATTGCTAGGAATCCTTTATATCCGATTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000323 GO:0000325 GO:0000932 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005788 GO:0005911 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010494 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030054 GO:0030154 GO:0030163 GO:0030312 GO:0031974 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034050 GO:0035770 GO:0036464 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0048046 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0061458 GO:0070011 GO:0070013 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1 Propeptide_C1

Protein Analysis

108

Amino Acids

11.87

Weight (kDa)

5.59

Isoelectric Point (pI)

37.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C1 PF00112 6 - 107 1.9e-28 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 259
AcsI RAATTY 1 cut(s) 214
AfaI GTAC 1 cut(s) 11
AfiI CCNNNNNNNGG 1 cut(s) 265
AgeI ACCGGT 1 cut(s) 61
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 2 cut(s) 23, 70
ApoI RAATTY 1 cut(s) 214
AsiGI ACCGGT 1 cut(s) 61
AspS9I GGNCC 1 cut(s) 148
AsuHPI GGTGA 2 cut(s) 135, 236
AvaII GGWCC 1 cut(s) 148
BbsI GAAGAC 1 cut(s) 112
Bbv12I GWGCWC 1 cut(s) 231
BccI CCATC 2 cut(s) 13, 182
BcoDI GTCTC 2 cut(s) 23, 70
BfaI CTAG 2 cut(s) 206, 300
Bme18I GGWCC 1 cut(s) 148
BmgT120I GGNCC 1 cut(s) 148
BmrI ACTGGG 1 cut(s) 241
BmsI GCATC 2 cut(s) 201, 262
BmuI ACTGGG 1 cut(s) 241
BpiI GAAGAC 1 cut(s) 112
BsaI GGTCTC 1 cut(s) 70
BsaWI WCCGGW 2 cut(s) 61, 145
Bsc4I CCNNNNNNNGG 1 cut(s) 265
Bse118I RCCGGY 1 cut(s) 61
Bse1I ACTGG 1 cut(s) 236
Bse3DI GCAATG 1 cut(s) 78
BseGI GGATG 1 cut(s) 193
BseLI CCNNNNNNNGG 1 cut(s) 265
BseMI GCAATG 1 cut(s) 78
BseMII CTCAG 2 cut(s) 81, 174
BseNI ACTGG 1 cut(s) 236
BshTI ACCGGT 1 cut(s) 61
BsiHKAI GWGCWC 1 cut(s) 231
BsiSI CCGG 2 cut(s) 62, 146
BsiWI CGTACG 1 cut(s) 9
BslFI GGGAC 2 cut(s) 151, 190
BslI CCNNNNNNNGG 1 cut(s) 265
BsmAI GTCTC 2 cut(s) 23, 70
BsmFI GGGAC 2 cut(s) 151, 190
Bso31I GGTCTC 1 cut(s) 70
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 1 cut(s) 16
BspACI CCGC 1 cut(s) 259
BspCNI CTCAG 2 cut(s) 80, 175
BspTNI GGTCTC 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 78
BsrFI RCCGGY 1 cut(s) 61
BsrI ACTGG 1 cut(s) 236
BssAI RCCGGY 1 cut(s) 61
BssMI GATC 1 cut(s) 16
Bst4CI ACNGT 1 cut(s) 163
BstDEI CTNAG 3 cut(s) 54, 67, 183
BstF5I GGATG 1 cut(s) 193
BstKTI GATC 1 cut(s) 19
BstMAI GTCTC 2 cut(s) 23, 70
BstMBI GATC 1 cut(s) 16
BstV2I GAAGAC 1 cut(s) 112
BtsCI GGATG 1 cut(s) 193
BtsIMutI CAGTG 1 cut(s) 229
Cfr10I RCCGGY 1 cut(s) 61
Cfr13I GGNCC 1 cut(s) 148
Csp6I GTAC 1 cut(s) 10
CspAI ACCGGT 1 cut(s) 61
CviAII CATG 1 cut(s) 219
CviJI RGCY 3 cut(s) 77, 205, 246
CviKI_1 RGCY 3 cut(s) 77, 205, 246
CviQI GTAC 1 cut(s) 10
DdeI CTNAG 3 cut(s) 54, 67, 183
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
Eco31I GGTCTC 1 cut(s) 70
Eco47I GGWCC 1 cut(s) 148
FaeI CATG 1 cut(s) 222
FaiI YATR 5 cut(s) 174, 220, 249, 251, 313
FaqI GGGAC 2 cut(s) 151, 190
FatI CATG 1 cut(s) 218
FokI GGATG 1 cut(s) 200
FspBI CTAG 2 cut(s) 206, 300
HapII CCGG 2 cut(s) 62, 146
Hin1II CATG 1 cut(s) 222
HinfI GANTC 3 cut(s) 117, 255, 304
HpaII CCGG 2 cut(s) 62, 146
HphI GGTGA 2 cut(s) 135, 236
Hpy188I TCNGA 2 cut(s) 101, 318
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4IV ACGT 1 cut(s) 12
HpyF3I CTNAG 3 cut(s) 54, 67, 183
HpySE526I ACGT 1 cut(s) 12
Hsp92II CATG 1 cut(s) 222
Kzo9I GATC 1 cut(s) 16
LmnI GCTCC 1 cut(s) 280
LpnPI CCDG 4 cut(s) 75, 111, 159, 217
LweI GCATC 2 cut(s) 201, 262
MaeI CTAG 2 cut(s) 206, 300
MaeII ACGT 1 cut(s) 12
MaeIII GTNAC 1 cut(s) 157
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 1 cut(s) 112
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 2 cut(s) 35, 214
MlyI GAGTC 1 cut(s) 126
MnlI CCTC 4 cut(s) 84, 178, 232, 257
MseI TTAA 3 cut(s) 21, 41, 325
MspI CCGG 2 cut(s) 62, 146
NdeII GATC 1 cut(s) 16
NlaIII CATG 1 cut(s) 222
PfeI GAWTC 2 cut(s) 255, 304
Pfl23II CGTACG 1 cut(s) 9
PinAI ACCGGT 1 cut(s) 61
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
PspLI CGTACG 1 cut(s) 9
PspPI GGNCC 1 cut(s) 148
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
SaqAI TTAA 3 cut(s) 21, 41, 325
Sau3AI GATC 1 cut(s) 16
Sau96I GGNCC 1 cut(s) 148
SchI GAGTC 1 cut(s) 126
SduI GDGCHC 1 cut(s) 231
SetI ASST 2 cut(s) 15, 286
SfaNI GCATC 2 cut(s) 201, 262
SinI GGWCC 1 cut(s) 148
Sse9I AATT 2 cut(s) 35, 214
SsiI CCGC 1 cut(s) 259
SspMI CTAG 2 cut(s) 206, 300
TaaI ACNGT 1 cut(s) 163
TaiI ACGT 1 cut(s) 15
TasI AATT 2 cut(s) 35, 214
TfiI GAWTC 2 cut(s) 255, 304
Tru1I TTAA 3 cut(s) 21, 41, 325
Tru9I TTAA 3 cut(s) 21, 41, 325
TscAI CASTG 1 cut(s) 236
TspDTI ATGAA 1 cut(s) 207
TspRI CASTG 1 cut(s) 236
VpaK11BI GGWCC 1 cut(s) 148
XapI RAATTY 1 cut(s) 214
XspI CTAG 2 cut(s) 206, 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.