Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0008221

Physical Location & Seq

Genomic Coordinates Reverse (-)

25772653 .. 25774855

Gene Structure 2203 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGACTGGTTGGTTTGTTTGGAGTAAGGGAAGGCTATATATAGCCCACAAGTATCTTCTTCTTTTTTTCAGAAACAAAGCCTTGAGTAAAATAATGAGTTCTGTTGAACTAAGACTCCAAACTCTAGCACAAAATTTCAGACTCGAACAATCAGTCAAACCACCTCCACCACCCACCGGTTCCGCCACCTCCACTTCAACAACCAAACGGGCGGCGATTCTGGTGTGTCTGTTCAAAGGGGACGATGGCGAGCTGCGCGTCATTCTCACGAAACGATCTTCATCTCTCTCTTCCAACCCTGGCGACGTTGCGCTCCCCGGCGGGAAGAGAGAGGAAGCGGATGCTGATGACGTGGACACCGCCCTCCGGGAGGCCAAGGAGGAGATCGGCCTGGACCCTTCCCTAGTCAAAGTTGTCGCCGTTCTTGACCACATTGTCAACAAGCGCGGTATGACAGTGGTTCCGGTAATTGGCCTACTTTCTGACATAAAAGCATTTAGTCCGGCTCCAAATGCTGCAGAAGTGGAGGCAATTTTCGATGCTCCTTTAGAAATGTTTCTCAAGGATGAGAAGAGGAAAGAAGAGGAGAGAGAATGGATGGGAGACAAGTATCTCTTACATTACTTCAACTTTGAATCGGATGATGGTAAAGAGTATGTCATATGGGCTCTAACTGCAGGCGTTCTAATAAGGGCTGCTTCAACCGTGTATGAGCGGCCACCGGCGTTTCTCGAGCGGAGGCCTACGTTCTGGGTGCGTGGTGGTGCGAGCACCACCATGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000210 GO:0003674 GO:0003824 GO:0004551 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006104 GO:0006139 GO:0006163 GO:0006164 GO:0006195 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008893 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009154 GO:0009165 GO:0009166 GO:0009259 GO:0009260 GO:0009261 GO:0009987 GO:0010945 GO:0015936 GO:0015937 GO:0016462 GO:0016787 GO:0016788 GO:0016794 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0032501 GO:0032502 GO:0033865 GO:0033866 GO:0033869 GO:0033875 GO:0034030 GO:0034031 GO:0034032 GO:0034033 GO:0034034 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035383 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044273 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046434 GO:0046483 GO:0046700 GO:0048856 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0072523 GO:0090407 GO:1901135 GO:1901136 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:2001293 GO:2001294

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

NUDIX

Protein Analysis

262

Amino Acids

29.08

Weight (kDa)

6.86

Isoelectric Point (pI)

51.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	69 - 146	2.2e-11	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0008221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45940 AT5G45940 AT5G45940
fragaria_vesca	FvH4_6g11030
malus_domestica	MD04G1162300.v1.1 MD10G1284100.v1.1 MD12G1174800.v1.1
prunus_persica	Prupe.4G057300_v2.0.a1 Prupe.4G057400_v2.0.a1 Prupe.6G282000_v2.0.a1
pyrus_communis	pycom04g14530 pycom10g23700 pycom10g23710
rosa_chinensis	RchiOBHm_Chr3g0462341
rosa_laevigata	RLG00000024865
rosa_multiflora	Rmu_sc0015540.1_g000001
rosa_roxburghii	Rroxscaffold_6G00417570
rosa_rugosa	Rorug03G0056000
rosa_samantha	Rh3AG114600 Rh3BG117800 Rh3CG120600 Rh3DG119800
rosa_wichuraiana	Rw3G009690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	434
AccBSI	CCGCTC	2 cut(s)	715, 736
AccII	CGCG	2 cut(s)	258, 447
AciI	CCGC	8 cut(s)	183, 212, 321, 338, 360, 447, 715, 736
AcoI	YGGCCR	1 cut(s)	716
AcsI	RAATTY	1 cut(s)	133
AfiI	CCNNNNNNNGG	4 cut(s)	176, 366, 370, 470
AgeI	ACCGGT	1 cut(s)	176
AgsI	TTSAA	6 cut(s)	107, 198, 235, 628, 635, 702
AjiI	CACGTC	1 cut(s)	352
AjnI	CCWGG	2 cut(s)	298, 390
AloI	GAACNNNNNNTCC	2 cut(s)	99, 131
AluBI	AGCT	1 cut(s)	253
AluI	AGCT	1 cut(s)	253
Alw21I	GWGCWC	1 cut(s)	773
Alw26I	GTCTC	1 cut(s)	597
Ama87I	CYCGRG	1 cut(s)	731
AoxI	GGCC	5 cut(s)	372, 388, 472, 716, 740
ApeKI	GCWGC	3 cut(s)	253, 515, 695
ApoI	RAATTY	1 cut(s)	133
ArsI	GACNNNNNNTTYG	2 cut(s)	138, 170
AsiGI	ACCGGT	1 cut(s)	176
Asp700I	GAANNNNTTC	1 cut(s)	555
AspLEI	GCGC	3 cut(s)	258, 313, 447
AspS9I	GGNCC	1 cut(s)	394
AsuC2I	CCSGG	2 cut(s)	318, 368
AvaI	CYCGRG	1 cut(s)	731
AvaII	GGWCC	1 cut(s)	394
BanII	GRGCYC	1 cut(s)	670
Bbv12I	GWGCWC	1 cut(s)	773
BbvI	GCAGC	3 cut(s)	240, 502, 682
BccI	CCATC	3 cut(s)	239, 592, 638
BceAI	ACGGC	1 cut(s)	404
BciT130I	CCWGG	2 cut(s)	300, 392
BcnI	CCSGG	2 cut(s)	318, 368
BcoDI	GTCTC	1 cut(s)	597
BfaI	CTAG	2 cut(s)	125, 404
BfmI	CTRYAG	2 cut(s)	516, 675
BisI	GCNGC	5 cut(s)	213, 254, 516, 696, 716
BlsI	GCNGC	5 cut(s)	214, 255, 517, 697, 717
Bme1390I	CCNGG	4 cut(s)	300, 318, 368, 392
Bme18I	GGWCC	1 cut(s)	394
BmeT110I	CYCGRG	1 cut(s)	731
BmgBI	CACGTC	1 cut(s)	352
BmgT120I	GGNCC	1 cut(s)	394
BmiI	GGNNCC	4 cut(s)	181, 396, 462, 507
BmrFI	CCNGG	4 cut(s)	300, 318, 368, 392
BmsI	GCATC	2 cut(s)	331, 529
BpuEI	CTTGAG	2 cut(s)	103, 545
BpuMI	CCSGG	2 cut(s)	318, 368
BsaBI	GATNNNNATC	1 cut(s)	280
BsaJI	CCNNGG	3 cut(s)	298, 316, 375
BsaWI	WCCGGW	2 cut(s)	176, 463
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bsc4I	CCNNNNNNNGG	4 cut(s)	176, 366, 370, 470
Bse118I	RCCGGY	2 cut(s)	176, 721
Bse1I	ACTGG	1 cut(s)	10
Bse8I	GATNNNNATC	1 cut(s)	280
BseBI	CCWGG	2 cut(s)	300, 392
BseDI	CCNNGG	3 cut(s)	298, 316, 375
BseGI	GGATG	4 cut(s)	346, 571, 603, 646
BseJI	GATNNNNATC	1 cut(s)	280
BseLI	CCNNNNNNNGG	4 cut(s)	176, 366, 370, 470
BseNI	ACTGG	1 cut(s)	10
BseRI	GAGGAG	2 cut(s)	395, 599
BseXI	GCAGC	3 cut(s)	240, 502, 682
Bsh1236I	CGCG	2 cut(s)	258, 447
BshFI	GGCC	5 cut(s)	374, 390, 474, 718, 742
BshTI	ACCGGT	1 cut(s)	176
BsiHKAI	GWGCWC	1 cut(s)	773
BsiHKCI	CYCGRG	1 cut(s)	731
BsiSI	CCGG	6 cut(s)	177, 318, 367, 464, 503, 722
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	4 cut(s)	176, 366, 370, 470
BsmAI	GTCTC	1 cut(s)	597
BsmFI	GGGAC	1 cut(s)	254
BsnI	GGCC	5 cut(s)	374, 390, 474, 718, 742
BsoBI	CYCGRG	1 cut(s)	731
Bsp1286I	GDGCHC	2 cut(s)	670, 773
Bsp143I	GATC	2 cut(s)	275, 384
BspACI	CCGC	8 cut(s)	183, 212, 321, 338, 360, 447, 715, 736
BspANI	GGCC	5 cut(s)	374, 390, 474, 718, 742
BspFNI	CGCG	2 cut(s)	258, 447
BspLI	GGNNCC	4 cut(s)	181, 396, 462, 507
BspMAI	CTGCAG	2 cut(s)	520, 679
BsrBI	CCGCTC	2 cut(s)	715, 736
BsrFI	RCCGGY	2 cut(s)	176, 721
BsrI	ACTGG	1 cut(s)	10
BssAI	RCCGGY	2 cut(s)	176, 721
BssECI	CCNNGG	3 cut(s)	298, 316, 375
BssMI	GATC	2 cut(s)	275, 384
BssT1I	CCWWGG	1 cut(s)	375
Bst2UI	CCWGG	2 cut(s)	300, 392
Bst4CI	ACNGT	2 cut(s)	457, 706
Bst6I	CTCTTC	4 cut(s)	295, 320, 566, 576
BstC8I	GCNNGC	3 cut(s)	251, 679, 769
BstDEI	CTNAG	1 cut(s)	110
BstENI	CCTNNNNNAGG	1 cut(s)	368
BstF5I	GGATG	4 cut(s)	346, 571, 603, 646
BstFNI	CGCG	2 cut(s)	258, 447
BstHHI	GCGC	3 cut(s)	258, 313, 447
BstKTI	GATC	2 cut(s)	278, 387
BstMAI	GTCTC	1 cut(s)	597
BstMBI	GATC	2 cut(s)	275, 384
BstMWI	GCNNNNNNNGC	3 cut(s)	255, 512, 674
BstNI	CCWGG	2 cut(s)	300, 392
BstSCI	CCNGG	4 cut(s)	298, 316, 366, 390
BstSFI	CTRYAG	2 cut(s)	516, 675
BstUI	CGCG	2 cut(s)	258, 447
BstV1I	GCAGC	3 cut(s)	240, 502, 682
BsuRI	GGCC	5 cut(s)	374, 390, 474, 718, 742
BtrI	CACGTC	1 cut(s)	352
BtsCI	GGATG	4 cut(s)	346, 571, 603, 646
BtsIMutI	CAGTG	1 cut(s)	462
Cac8I	GCNNGC	3 cut(s)	251, 679, 769
CfoI	GCGC	3 cut(s)	258, 313, 447
Cfr10I	RCCGGY	2 cut(s)	176, 721
Cfr13I	GGNCC	1 cut(s)	394
CseI	GACGC	1 cut(s)	247
CspAI	ACCGGT	1 cut(s)	176
CviAII	CATG	1 cut(s)	778
DdeI	CTNAG	1 cut(s)	110
DpnI	GATC	2 cut(s)	277, 386
DpnII	GATC	2 cut(s)	275, 384
DrdI	GACNNNNNNGTC	1 cut(s)	434
DseDI	GACNNNNNNGTC	1 cut(s)	434
EaeI	YGGCCR	1 cut(s)	716
Eam1104I	CTCTTC	4 cut(s)	295, 320, 566, 576
EarI	CTCTTC	4 cut(s)	295, 320, 566, 576
EciI	GGCGGA	1 cut(s)	172
Eco130I	CCWWGG	1 cut(s)	375
Eco147I	AGGCCT	1 cut(s)	742
Eco24I	GRGCYC	1 cut(s)	670
Eco47I	GGWCC	1 cut(s)	394
Eco88I	CYCGRG	1 cut(s)	731
EcoNI	CCTNNNNNAGG	1 cut(s)	368
EcoRII	CCWGG	2 cut(s)	298, 390
EcoT14I	CCWWGG	1 cut(s)	375
EcoT38I	GRGCYC	1 cut(s)	670
ErhI	CCWWGG	1 cut(s)	375
FaeI	CATG	1 cut(s)	781
FalI	AAGNNNNNCTT	4 cut(s)	599, 631, 682, 714
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	1 cut(s)	777
FauI	CCCGC	1 cut(s)	314
FauNDI	CATATG	1 cut(s)	662
Fnu4HI	GCNGC	5 cut(s)	213, 254, 516, 696, 716
FokI	GGATG	4 cut(s)	353, 578, 610, 653
FriOI	GRGCYC	1 cut(s)	670
Fsp4HI	GCNGC	5 cut(s)	213, 254, 516, 696, 716
FspBI	CTAG	2 cut(s)	125, 404
GlaI	GCGC	3 cut(s)	257, 312, 446
GluI	GCNGC	5 cut(s)	213, 254, 516, 696, 716
HaeIII	GGCC	5 cut(s)	374, 390, 474, 718, 742
HapII	CCGG	6 cut(s)	177, 318, 367, 464, 503, 722
HgaI	GACGC	1 cut(s)	247
HhaI	GCGC	3 cut(s)	258, 313, 447
Hin1II	CATG	1 cut(s)	781
Hin6I	GCGC	3 cut(s)	256, 311, 445
HinP1I	GCGC	3 cut(s)	256, 311, 445
HincII	GTYRAC	1 cut(s)	439
HindII	GTYRAC	1 cut(s)	439
HinfI	GANTC	4 cut(s)	114, 141, 217, 635
HpaII	CCGG	6 cut(s)	177, 318, 367, 464, 503, 722
Hpy166II	GTNNAC	2 cut(s)	355, 439
Hpy188I	TCNGA	4 cut(s)	71, 140, 484, 640
Hpy188III	TCNNGA	3 cut(s)	268, 425, 731
Hpy8I	GTNNAC	2 cut(s)	355, 439
Hpy99I	CGWCG	1 cut(s)	308
HpyAV	CCTTC	2 cut(s)	24, 408
HpyCH4III	ACNGT	2 cut(s)	457, 706
HpyCH4IV	ACGT	3 cut(s)	306, 351, 746
HpyCH4V	TGCA	2 cut(s)	518, 677
HpyF10VI	GCNNNNNNNGC	3 cut(s)	255, 512, 674
HpyF3I	CTNAG	1 cut(s)	110
HpySE526I	ACGT	3 cut(s)	306, 351, 746
Hsp92II	CATG	1 cut(s)	781
HspAI	GCGC	3 cut(s)	256, 311, 445
Kzo9I	GATC	2 cut(s)	275, 384
LmnI	GCTCC	3 cut(s)	318, 511, 547
Lsp1109I	GCAGC	3 cut(s)	240, 502, 682
LweI	GCATC	2 cut(s)	331, 529
MaeI	CTAG	2 cut(s)	125, 404
MaeII	ACGT	3 cut(s)	306, 351, 746
MalI	GATC	2 cut(s)	277, 386
MbiI	CCGCTC	2 cut(s)	715, 736
MboI	GATC	2 cut(s)	275, 384
MboII	GAAGA	7 cut(s)	47, 50, 270, 282, 337, 583, 593
MhlI	GDGCHC	2 cut(s)	670, 773
MluCI	AATT	3 cut(s)	133, 468, 531
MlyI	GAGTC	2 cut(s)	108, 135
MmeI	TCCRAC	1 cut(s)	318
MroXI	GAANNNNTTC	1 cut(s)	555
MslI	CAYNNNNRTG	1 cut(s)	776
MspI	CCGG	6 cut(s)	177, 318, 367, 464, 503, 722
MspR9I	CCNGG	4 cut(s)	300, 318, 368, 392
MvaI	CCWGG	2 cut(s)	300, 392
MvnI	CGCG	2 cut(s)	258, 447
MwoI	GCNNNNNNNGC	3 cut(s)	255, 512, 674
NciI	CCSGG	2 cut(s)	318, 368
NdeI	CATATG	1 cut(s)	662
NdeII	GATC	2 cut(s)	275, 384
NlaIII	CATG	1 cut(s)	781
NlaIV	GGNNCC	4 cut(s)	181, 396, 462, 507
PaeR7I	CTCGAG	1 cut(s)	731
PceI	AGGCCT	1 cut(s)	742
PdmI	GAANNNNTTC	1 cut(s)	555
PfeI	GAWTC	2 cut(s)	217, 635
PfoI	TCCNGGA	1 cut(s)	366
PinAI	ACCGGT	1 cut(s)	176
PkrI	GCNGC	5 cut(s)	214, 255, 517, 697, 717
PleI	GAGTC	2 cut(s)	108, 135
PpsI	GAGTC	2 cut(s)	108, 135
Psp6I	CCWGG	2 cut(s)	298, 390
PspGI	CCWGG	2 cut(s)	298, 390
PspN4I	GGNNCC	4 cut(s)	181, 396, 462, 507
PspPI	GGNCC	1 cut(s)	394
PstI	CTGCAG	2 cut(s)	520, 679
RseI	CAYNNNNRTG	1 cut(s)	776
SatI	GCNGC	5 cut(s)	213, 254, 516, 696, 716
Sau3AI	GATC	2 cut(s)	275, 384
Sau96I	GGNCC	1 cut(s)	394
SchI	GAGTC	2 cut(s)	108, 135
ScrFI	CCNGG	4 cut(s)	300, 318, 368, 392
SduI	GDGCHC	2 cut(s)	670, 773
SetI	ASST	6 cut(s)	166, 191, 255, 309, 354, 749
SfaNI	GCATC	2 cut(s)	331, 529
SfcI	CTRYAG	2 cut(s)	516, 675
Sfr274I	CTCGAG	1 cut(s)	731
SgrAI	CRCCGGYG	1 cut(s)	721
SinI	GGWCC	1 cut(s)	394
SlaI	CTCGAG	1 cut(s)	731
SmiMI	CAYNNNNRTG	1 cut(s)	776
SmlI	CTYRAG	3 cut(s)	82, 560, 731
SmoI	CTYRAG	3 cut(s)	82, 560, 731
Sse9I	AATT	3 cut(s)	133, 468, 531
SseBI	AGGCCT	1 cut(s)	742
SsiI	CCGC	8 cut(s)	183, 212, 321, 338, 360, 447, 715, 736
SspMI	CTAG	2 cut(s)	125, 404
StuI	AGGCCT	1 cut(s)	742
StyD4I	CCNGG	4 cut(s)	298, 316, 366, 390
StyI	CCWWGG	1 cut(s)	375
TaaI	ACNGT	2 cut(s)	457, 706
TaiI	ACGT	3 cut(s)	309, 354, 749
TaqI	TCGA	3 cut(s)	144, 537, 732
TasI	AATT	3 cut(s)	133, 468, 531
TauI	GCSGC	2 cut(s)	215, 718
TfiI	GAWTC	2 cut(s)	217, 635
TscAI	CASTG	1 cut(s)	462
TseI	GCWGC	3 cut(s)	253, 515, 695
TspDTI	ATGAA	1 cut(s)	270
TspRI	CASTG	1 cut(s)	462
VpaK11BI	GGWCC	1 cut(s)	394
XagI	CCTNNNNNAGG	1 cut(s)	368
XapI	RAATTY	1 cut(s)	133
XhoI	CTCGAG	1 cut(s)	731
XmnI	GAANNNNTTC	1 cut(s)	555
XspI	CTAG	2 cut(s)	125, 404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.