Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0011516

Physical Location & Seq

Genomic Coordinates Reverse (-)

26295123 .. 26295983

Gene Structure 861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGCAGCAACAGCAGCAGGAGGGGGGTGAGCAAAACGAGCAGCAGAACCAGGATCAGCGGTTGAAGGCGGCGGCGGAGCAGGAGAACCAGCAGCCACACAGGTGCCCGCGGTGCCACTCCATGAACACCAAGTTCTGCTACTACAACAACTACAGCCTCTCTCAGCCGCGGTACTTTTGCAAGGCGTGTAGGAGGTACTGGACTCAGGGCGGGACCCTCCGCAATGTCCCCGTCGGCGGCGGCTGCCGAAAGGGGAAGCGCGACAAGGCGGGTTCCTCCTCGGTGTCTGCATCTCGGACCGTGCAGCCTCAGCAGCCGCAGCCACCACAGAGAGAGCAGGACATGCTGAATACTCTGGGAATTGGCGGTGGCTCCGTTGGGATGTCCACTGAAAACCCGAGCGGTGGTTTGGCTATTCACCATCAGTACTACCCTGGTGCTTCTCATGGGTACTTGTCATCTCTTGCAGGGCTTCAATCTCTGAATCAATCTCAGCCGTTCAATGTTGGGGGTGGTCATGATCCGTCCTCGAGCATGAGCCTGCTGCAGGGGTTCAATCTCTCAGCTCCTTTGGTGGTGGCGCAGCCACAGCAGCGTCAGCAGTTTTATCAGATGGGCGGCGGTAGGAGCAACAATCTGGTGGATCAAGCTGCTCCATACCCATCTGAGAATGATCAGTGGGCCCCCCAAAGCTTCGTCAACAGACCATCTTTGAATGCTTCTTCTTCTGCAGCAGCAGCCTCTGATAGCGCTTTGTGGGCCATGGGCAACAACCCCATCACCACCACCACCACCAGCAGCACTTCTCCGAACCCAAACCAGTTGCCTGATCTGCCTGGATCATATCGCTCTCCCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0060688 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1900618 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905428 GO:2000026 GO:2000032 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

287

Amino Acids

30.97

Weight (kDa)

8.92

Isoelectric Point (pI)

70.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	31 - 87	3.9e-33	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011516)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26920 FvH4_3g08900
malus_domestica	MD00G1115200.v1.1 MD07G1265700.v1.1 MD10G1292200.v1.1
prunus_persica	Prupe.4G050200_v2.0.a1 Prupe.4G050200_v2.0.a1
pyrus_communis	pycom05g28850 pycom10g24420
rosa_chinensis	RchiOBHm_Chr5g0008851
rosa_laevigata	RLG00000031609
rosa_multiflora	Rmu_sc0007899.1_g000001
rosa_roxburghii	Rroxscaffold_1G00067150 Rroxscaffold_1G00067770
rosa_rugosa	Rorug04G0439800
rosa_samantha	Rh5AG067900 Rh5BG065000 Rh5CG076100 Rh5DG060800
rosa_wichuraiana	Rw5G006380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	102, 111
AccBSI	CCGCTC	1 cut(s)	402
AccII	CGCG	3 cut(s)	109, 169, 261
AclWI	GGATC	4 cut(s)	60, 515, 651, 847
AfaI	GTAC	4 cut(s)	173, 197, 428, 452
AfeI	AGCGCT	1 cut(s)	751
AfiI	CCNNNNNNNGG	3 cut(s)	236, 404, 547
AgsI	TTSAA	5 cut(s)	64, 476, 502, 556, 715
AjnI	CCWGG	3 cut(s)	48, 433, 835
AleI	CACNNNNGTG	1 cut(s)	100
AluBI	AGCT	3 cut(s)	566, 650, 693
AluI	AGCT	3 cut(s)	566, 650, 693
AlwI	GGATC	4 cut(s)	60, 515, 651, 847
AlwNI	CAGNNNCTG	1 cut(s)	743
Ama87I	CYCGRG	2 cut(s)	397, 529
Aor51HI	AGCGCT	1 cut(s)	751
AoxI	GGCC	2 cut(s)	681, 759
ApaI	GGGCCC	1 cut(s)	685
AspLEI	GCGC	3 cut(s)	261, 583, 752
AspS9I	GGNCC	5 cut(s)	213, 297, 681, 682, 759
AsuHPI	GGTGA	3 cut(s)	38, 410, 772
AvaI	CYCGRG	2 cut(s)	397, 529
AvaII	GGWCC	2 cut(s)	213, 297
BaeGI	GKGCMC	2 cut(s)	107, 685
BanI	GGYRCC	2 cut(s)	102, 111
BanII	GRGCYC	1 cut(s)	685
BbvCI	CCTCAGC	1 cut(s)	309
BccI	CCATC	5 cut(s)	429, 607, 670, 715, 785
BceAI	ACGGC	1 cut(s)	481
BciT130I	CCWGG	3 cut(s)	50, 435, 837
BclI	TGATCA	1 cut(s)	673
BfmI	CTRYAG	3 cut(s)	151, 545, 729
BfoI	RGCGCY	1 cut(s)	753
BmcAI	AGTACT	1 cut(s)	428
Bme1390I	CCNGG	3 cut(s)	50, 435, 837
Bme18I	GGWCC	2 cut(s)	213, 297
BmeT110I	CYCGRG	2 cut(s)	397, 529
BmgT120I	GGNCC	5 cut(s)	213, 297, 681, 682, 759
BmiI	GGNNCC	8 cut(s)	104, 113, 214, 215, 274, 373, 683, 684
BmrFI	CCNGG	3 cut(s)	50, 435, 837
BmsI	GCATC	1 cut(s)	299
Bpu10I	CCTNAGC	1 cut(s)	309
BsaJI	CCNNGG	5 cut(s)	107, 167, 279, 433, 762
Bsc4I	CCNNNNNNNGG	3 cut(s)	236, 404, 547
Bse1I	ACTGG	2 cut(s)	203, 820
Bse3DI	GCAATG	1 cut(s)	229
BseBI	CCWGG	3 cut(s)	50, 435, 837
BseDI	CCNNGG	5 cut(s)	107, 167, 279, 433, 762
BseGI	GGATG	1 cut(s)	387
BseLI	CCNNNNNNNGG	3 cut(s)	236, 404, 547
BseMI	GCAATG	1 cut(s)	229
BseMII	CTCAG	6 cut(s)	176, 218, 323, 506, 576, 657
BseNI	ACTGG	2 cut(s)	203, 820
BseRI	GAGGAG	1 cut(s)	268
BseSI	GKGCMC	2 cut(s)	107, 685
BsgI	GTGCAG	1 cut(s)	323
Bsh1236I	CGCG	3 cut(s)	109, 169, 261
BshFI	GGCC	2 cut(s)	683, 761
BshNI	GGYRCC	2 cut(s)	102, 111
BsiHKCI	CYCGRG	2 cut(s)	397, 529
BslFI	GGGAC	2 cut(s)	212, 226
BslI	CCNNNNNNNGG	3 cut(s)	236, 404, 547
BsmFI	GGGAC	2 cut(s)	212, 226
BsmI	GAATGC	1 cut(s)	721
BsnI	GGCC	2 cut(s)	683, 761
BsoBI	CYCGRG	2 cut(s)	397, 529
Bsp120I	GGGCCC	1 cut(s)	681
Bsp1286I	GDGCHC	2 cut(s)	107, 685
Bsp143I	GATC	6 cut(s)	52, 520, 643, 673, 829, 839
Bsp19I	CCATGG	1 cut(s)	762
BspANI	GGCC	2 cut(s)	683, 761
BspCNI	CTCAG	6 cut(s)	175, 217, 322, 505, 575, 658
BspFNI	CGCG	3 cut(s)	109, 169, 261
BspHI	TCATGA	1 cut(s)	517
BspLI	GGNNCC	8 cut(s)	104, 113, 214, 215, 274, 373, 683, 684
BspMAI	CTGCAG	2 cut(s)	549, 733
BspPI	GGATC	4 cut(s)	60, 515, 651, 847
BspT107I	GGYRCC	2 cut(s)	102, 111
BsrBI	CCGCTC	1 cut(s)	402
BsrDI	GCAATG	1 cut(s)	229
BsrI	ACTGG	2 cut(s)	203, 820
BssECI	CCNNGG	5 cut(s)	107, 167, 279, 433, 762
BssMI	GATC	6 cut(s)	52, 520, 643, 673, 829, 839
BssT1I	CCWWGG	1 cut(s)	762
Bst2UI	CCWGG	3 cut(s)	50, 435, 837
Bst4CI	ACNGT	1 cut(s)	301
BstAPI	GCANNNNNTGC	1 cut(s)	343
BstC8I	GCNNGC	2 cut(s)	107, 542
BstDEI	CTNAG	6 cut(s)	162, 204, 309, 492, 562, 666
BstDSI	CCRYGG	3 cut(s)	107, 167, 762
BstENI	CCTNNNNNAGG	1 cut(s)	545
BstF5I	GGATG	1 cut(s)	387
BstFNI	CGCG	3 cut(s)	109, 169, 261
BstH2I	RGCGCY	1 cut(s)	753
BstHHI	GCGC	3 cut(s)	261, 583, 752
BstKTI	GATC	6 cut(s)	55, 523, 646, 676, 832, 842
BstMBI	GATC	6 cut(s)	52, 520, 643, 673, 829, 839
BstNI	CCWGG	3 cut(s)	50, 435, 837
BstNSI	RCATGY	1 cut(s)	346
BstSCI	CCNGG	3 cut(s)	48, 433, 835
BstSFI	CTRYAG	3 cut(s)	151, 545, 729
BstSLI	GKGCMC	2 cut(s)	107, 685
BstUI	CGCG	3 cut(s)	109, 169, 261
BsuRI	GGCC	2 cut(s)	683, 761
BtgI	CCRYGG	3 cut(s)	107, 167, 762
BtsCI	GGATG	1 cut(s)	387
BtsIMutI	CAGTG	2 cut(s)	387, 683
Cac8I	GCNNGC	2 cut(s)	107, 542
CaiI	CAGNNNCTG	1 cut(s)	743
CciI	TCATGA	1 cut(s)	517
CfoI	GCGC	3 cut(s)	261, 583, 752
Cfr13I	GGNCC	5 cut(s)	213, 297, 681, 682, 759
Cfr42I	CCGCGG	2 cut(s)	110, 170
CpoI	CGGWCCG	1 cut(s)	297
CseI	GACGC	1 cut(s)	584
Csp6I	GTAC	4 cut(s)	172, 196, 427, 451
CspI	CGGWCCG	1 cut(s)	297
CviAII	CATG	6 cut(s)	121, 343, 446, 518, 535, 763
CviQI	GTAC	4 cut(s)	172, 196, 427, 451
DdeI	CTNAG	6 cut(s)	162, 204, 309, 492, 562, 666
DpnI	GATC	6 cut(s)	54, 522, 645, 675, 831, 841
DpnII	GATC	6 cut(s)	52, 520, 643, 673, 829, 839
EciI	GGCGGA	1 cut(s)	89
Eco130I	CCWWGG	1 cut(s)	762
Eco24I	GRGCYC	1 cut(s)	685
Eco47I	GGWCC	2 cut(s)	213, 297
Eco47III	AGCGCT	1 cut(s)	751
Eco88I	CYCGRG	2 cut(s)	397, 529
EcoNI	CCTNNNNNAGG	1 cut(s)	545
EcoO109I	RGGNCCY	2 cut(s)	213, 682
EcoRII	CCWGG	3 cut(s)	48, 433, 835
EcoT14I	CCWWGG	1 cut(s)	762
EcoT38I	GRGCYC	1 cut(s)	685
ErhI	CCWWGG	1 cut(s)	762
FaeI	CATG	6 cut(s)	124, 346, 449, 521, 538, 766
FaiI	YATR	8 cut(s)	122, 344, 447, 519, 536, 658, 764, 844
FaqI	GGGAC	2 cut(s)	212, 226
FatI	CATG	6 cut(s)	120, 342, 445, 517, 534, 762
FauI	CCCGC	3 cut(s)	114, 203, 262
FbaI	TGATCA	1 cut(s)	673
FokI	GGATG	1 cut(s)	394
FriOI	GRGCYC	1 cut(s)	685
GlaI	GCGC	3 cut(s)	260, 582, 751
HaeII	RGCGCY	1 cut(s)	753
HaeIII	GGCC	2 cut(s)	683, 761
HgaI	GACGC	1 cut(s)	584
HhaI	GCGC	3 cut(s)	261, 583, 752
Hin1II	CATG	6 cut(s)	124, 346, 449, 521, 538, 766
Hin6I	GCGC	3 cut(s)	259, 581, 750
HinP1I	GCGC	3 cut(s)	259, 581, 750
HincII	GTYRAC	1 cut(s)	700
HindII	GTYRAC	1 cut(s)	700
HindIII	AAGCTT	1 cut(s)	691
HinfI	GANTC	2 cut(s)	202, 484
HphI	GGTGA	3 cut(s)	38, 410, 772
Hpy166II	GTNNAC	2 cut(s)	387, 700
Hpy188I	TCNGA	6 cut(s)	297, 483, 612, 667, 745, 810
Hpy188III	TCNNGA	1 cut(s)	518
Hpy8I	GTNNAC	2 cut(s)	387, 700
Hpy99I	CGWCG	1 cut(s)	236
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4V	TGCA	7 cut(s)	4, 180, 290, 304, 467, 547, 731
HpyF3I	CTNAG	6 cut(s)	162, 204, 309, 492, 562, 666
Hsp92II	CATG	6 cut(s)	124, 346, 449, 521, 538, 766
HspAI	GCGC	3 cut(s)	259, 581, 750
KflI	GGGWCCC	1 cut(s)	213
Ksp22I	TGATCA	1 cut(s)	673
KspI	CCGCGG	2 cut(s)	110, 170
Kzo9I	GATC	6 cut(s)	52, 520, 643, 673, 829, 839
LmnI	GCTCC	5 cut(s)	76, 377, 571, 627, 658
LweI	GCATC	1 cut(s)	299
MalI	GATC	6 cut(s)	54, 522, 645, 675, 831, 841
MbiI	CCGCTC	1 cut(s)	402
MboI	GATC	6 cut(s)	52, 520, 643, 673, 829, 839
MboII	GAAGA	2 cut(s)	714, 717
MhlI	GDGCHC	2 cut(s)	107, 685
MluCI	AATT	2 cut(s)	360, 856
MlyI	GAGTC	1 cut(s)	196
MnlI	CCTC	9 cut(s)	13, 167, 186, 227, 286, 289, 318, 538, 751
MseI	TTAA	1 cut(s)	859
MslI	CAYNNNNRTG	1 cut(s)	100
MspA1I	CMGCKG	3 cut(s)	58, 109, 169
MspR9I	CCNGG	3 cut(s)	50, 435, 837
Mva1269I	GAATGC	1 cut(s)	721
MvaI	CCWGG	3 cut(s)	50, 435, 837
MvnI	CGCG	3 cut(s)	109, 169, 261
NcoI	CCATGG	1 cut(s)	762
NdeII	GATC	6 cut(s)	52, 520, 643, 673, 829, 839
NlaIII	CATG	6 cut(s)	124, 346, 449, 521, 538, 766
NlaIV	GGNNCC	8 cut(s)	104, 113, 214, 215, 274, 373, 683, 684
NspI	RCATGY	1 cut(s)	346
OliI	CACNNNNGTG	1 cut(s)	100
PaeR7I	CTCGAG	1 cut(s)	529
PagI	TCATGA	1 cut(s)	517
PctI	GAATGC	1 cut(s)	721
PfeI	GAWTC	1 cut(s)	484
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
PpuMI	RGGWCCY	1 cut(s)	213
Psp5II	RGGWCCY	1 cut(s)	213
Psp6I	CCWGG	3 cut(s)	48, 433, 835
PspGI	CCWGG	3 cut(s)	48, 433, 835
PspN4I	GGNNCC	8 cut(s)	104, 113, 214, 215, 274, 373, 683, 684
PspOMI	GGGCCC	1 cut(s)	681
PspPI	GGNCC	5 cut(s)	213, 297, 681, 682, 759
PspPPI	RGGWCCY	1 cut(s)	213
PspXI	VCTCGAGB	1 cut(s)	529
PstI	CTGCAG	2 cut(s)	549, 733
PstNI	CAGNNNCTG	1 cut(s)	743
RsaI	GTAC	4 cut(s)	173, 197, 428, 452
RsaNI	GTAC	4 cut(s)	172, 196, 427, 451
RseI	CAYNNNNRTG	1 cut(s)	100
Rsr2I	CGGWCCG	1 cut(s)	297
RsrII	CGGWCCG	1 cut(s)	297
SacII	CCGCGG	2 cut(s)	110, 170
SaqAI	TTAA	1 cut(s)	859
Sau3AI	GATC	6 cut(s)	52, 520, 643, 673, 829, 839
Sau96I	GGNCC	5 cut(s)	213, 297, 681, 682, 759
ScaI	AGTACT	1 cut(s)	428
SchI	GAGTC	1 cut(s)	196
ScrFI	CCNGG	3 cut(s)	50, 435, 837
SduI	GDGCHC	2 cut(s)	107, 685
SetI	ASST	5 cut(s)	104, 197, 568, 652, 695
SfaNI	GCATC	1 cut(s)	299
SfcI	CTRYAG	3 cut(s)	151, 545, 729
Sfr274I	CTCGAG	1 cut(s)	529
Sfr303I	CCGCGG	2 cut(s)	110, 170
SgrBI	CCGCGG	2 cut(s)	110, 170
SinI	GGWCC	2 cut(s)	213, 297
SlaI	CTCGAG	1 cut(s)	529
SmiMI	CAYNNNNRTG	1 cut(s)	100
SmlI	CTYRAG	1 cut(s)	529
SmoI	CTYRAG	1 cut(s)	529
Sse9I	AATT	2 cut(s)	360, 856
StyD4I	CCNGG	3 cut(s)	48, 433, 835
StyI	CCWWGG	1 cut(s)	762
TaaI	ACNGT	1 cut(s)	301
TaqI	TCGA	1 cut(s)	530
TasI	AATT	2 cut(s)	360, 856
TatI	WGTACW	1 cut(s)	426
TauI	GCSGC	7 cut(s)	71, 74, 169, 240, 243, 319, 621
TfiI	GAWTC	1 cut(s)	484
Tru1I	TTAA	1 cut(s)	859
Tru9I	TTAA	1 cut(s)	859
TscAI	CASTG	2 cut(s)	394, 683
TspDTI	ATGAA	1 cut(s)	137
TspGWI	ACGGA	2 cut(s)	364, 513
TspRI	CASTG	2 cut(s)	394, 683
VpaK11BI	GGWCC	2 cut(s)	213, 297
XagI	CCTNNNNNAGG	1 cut(s)	545
XceI	RCATGY	1 cut(s)	346
XhoI	CTCGAG	1 cut(s)	529
ZrmI	AGTACT	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.