pycom10g27100

Protein TRANSPARENT TESTA 12-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
28168769 .. 28175865
7097 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1527 bp
ATGTCTCAAGACCAACTCCACCAACCCATCTTAGACTCCGAACCGGAACCGGCAGCAGAACCCTCCAGCAATGGAGACGGTGTGGACTCTCTACTCGAGAAGGTGCTGTCCGACACTCAATTGCCCCCATTCAAGCGACTCCGCATGGCCACATGGATCGAACTCAAGCTCCTCTTTCGCCTTGCTGCCCCCGCCGTCTTGGTTTATGTCATTAACAACTCCATGTCACTTTCCACTCGTGTCTTCGCCGGCCATCTCGGCAATCTTGAGCTGGCCGCCGCCATTCTCGGCAACAGCGGCATCCAACTCTTGGCCTATGGCCTCATGCTAGGCATGGGAAGTGCAGTGGAGACTCTATGTGGGCAAGCCTACGGTGCCCAAAAGTATGACATGTTAAGCATATACCTTCAAAGAGCAATCATAGTCCTCTCCCTCACTGGCCTCCCACTTCTGGCAGTCTTTCTCCTCGCAAAACCCTTGTTGCTTTTACTCGGCGAACCAACCGCCGTGGCCTCAGCCGCCGCCGTCTTTGTCTACGGTCTCATCCCTCAAATATTTGCCTACGCCATAAACTTCCCCATTCAAAAGTTTCTCCAAGCACAACGAATTGTGGCCCCAAGTGCTTACATATCAGCAGCTACTTTTGGGGTGCATTTATTGATGAGCTGGGTTGCTGTGTACAAGCTGGGTTTAGGGTTGCTAGGTGTTTCTCTTGTTTTGAGCTTGTCGTGGTGGATAATAGTTGGAGCCCAGATTGTTTACATCTTGGTGAGCAGTCAGTGTAAGCTGACTTGGCAGGGTTTCAGTGTGCAAGCCTTTTCTGGGTTGTGGGATTTTTTCAAGCTATCGGCTGCATCGGCGGTGATGTTGTGCTTGGAGGTTTGGTACACTCAGGTGCTAGTTTTGATTGCTGGGTTGCTAAAAAATCCTGAGCTTGCCCTAACTTCTTTGGCCGTATGCATGTCGTTAAATGGAGTGTTGTTCATGGTTTCAGTCGGGTTCAATGCAGCTGCAAGTGTGAGGGTGAGCAATGAGCTAGGTTCTGGGAATCCAAAGTCAGCAGCATTCTCGGTTATAGTAGTAACTTCGGTGTCCTTAGCTTTTGCTGTTCTGGAAGCTGTGGTTGTGCTCTCCCTCCGCGACGTAATCAGTTATGCCTTCACCAGCGGTGAAACTGTGGCCAAGGCAGTCTCGCACCTCACTCCATATTTGGCCGTCACTCTAATCCTCAATGGGATTCAACCAGTCCTATCCGGGGTGGCGGTTGGGTGTGGGTGGCAAGCATTTGTGGCATATGTGAATGTGGGATGTTATTACGTAGTTGGAATTCCATGCGGCTGTGTTCTTGGATTTGTGTTCGACCTTGGTGCTGAGGGAATATGGTCGGGGATGATAGGAGGAACTCTAATGCAGACCTTAATTTTACTGTGGGTAACATTTCGTACGGACTGGGATAAAGAGGTGAACAATGCCAAAAGTCGCGTGGAGAAATGGGATGACAAGAAGCAGCCTCTACTAAAAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

509

Amino Acids

54.43

Weight (kDa)

6.44

Isoelectric Point (pI)

23.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 64 - 224 8.7e-33 MatE
MatE PF01554 286 - 446 6.8e-28 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 374
AccB7I CCANNNNNTGG 1 cut(s) 310
AccI GTMKAC 1 cut(s) 534
AccII CGCG 2 cut(s) 1140, 1482
AclWI GGATC 1 cut(s) 164
AcoI YGGCCR 6 cut(s) 147, 250, 273, 951, 1179, 1212
AcsI RAATTY 1 cut(s) 1326
AfaI GTAC 3 cut(s) 680, 887, 1444
AfiI CCNNNNNNNGG 4 cut(s) 310, 451, 822, 1255
AflIII ACRYGT 1 cut(s) 390
AgsI TTSAA 6 cut(s) 133, 410, 584, 841, 1003, 1241
AleI CACNNNNGTG 1 cut(s) 893
AloI GAACNNNNNNTCC 2 cut(s) 153, 185
Alw21I GWGCWC 1 cut(s) 1131
Alw26I GTCTC 5 cut(s) 9, 69, 344, 545, 1195
AlwI GGATC 1 cut(s) 164
Ama87I CYCGRG 1 cut(s) 95
ApeKI GCWGC 8 cut(s) 53, 185, 635, 851, 1007, 1010, 1061, 1507
ApoI RAATTY 1 cut(s) 1326
AspS9I GGNCC 1 cut(s) 613
AsuC2I CCSGG 1 cut(s) 1255
AsuHPI GGTGA 6 cut(s) 781, 874, 1036, 1153, 1181, 1474
AvaI CYCGRG 1 cut(s) 95
BaeGI GKGCMC 1 cut(s) 379
BalI TGGCCA 2 cut(s) 149, 1181
BanI GGYRCC 1 cut(s) 374
BanII GRGCYC 1 cut(s) 751
BauI CACGAG 1 cut(s) 237
BbsI GAAGAC 1 cut(s) 235
Bbv12I GWGCWC 1 cut(s) 1131
BbvCI CCTCAGC 2 cut(s) 514, 1371
BbvI GCAGC 8 cut(s) 65, 172, 647, 838, 997, 1019, 1073, 1519
BccI CCATC 2 cut(s) 35, 261
BceAI ACGGC 5 cut(s) 179, 491, 509, 938, 1199
BcgI CGANNNNNNTGC 4 cut(s) 1050, 1084, 1349, 1383
BcnI CCSGG 1 cut(s) 1255
BcoDI GTCTC 5 cut(s) 9, 69, 344, 545, 1195
BfaI CTAG 4 cut(s) 329, 701, 899, 1037
BglI GCCNNNNNGGC 1 cut(s) 258
Bme1390I CCNGG 1 cut(s) 1255
BmeT110I CYCGRG 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 613
BmiI GGNNCC 4 cut(s) 48, 376, 615, 748
BmrFI CCNGG 1 cut(s) 1255
BmrI ACTGGG 1 cut(s) 1459
BmsI GCATC 2 cut(s) 309, 863
BmuI ACTGGG 1 cut(s) 1459
BpiI GAAGAC 1 cut(s) 235
BpmI CTGGAG 1 cut(s) 49
Bpu10I CCTNAGC 4 cut(s) 514, 930, 1096, 1371
BpuEI CTTGAG 2 cut(s) 149, 287
BpuMI CCSGG 1 cut(s) 1255
BsaAI YACGTR 1 cut(s) 1318
BsaI GGTCTC 1 cut(s) 545
BsaJI CCNNGG 4 cut(s) 507, 1182, 1254, 1363
BsaWI WCCGGW 1 cut(s) 43
BsaXI ACNNNNNCTCC 6 cut(s) 66, 96, 153, 183, 869, 899
Bsc4I CCNNNNNNNGG 4 cut(s) 310, 451, 822, 1255
Bse118I RCCGGY 2 cut(s) 49, 248
Bse1I ACTGG 3 cut(s) 442, 1244, 1454
Bse3DI GCAATG 2 cut(s) 76, 1036
BseDI CCNNGG 4 cut(s) 507, 1182, 1254, 1363
BseGI GGATG 5 cut(s) 300, 543, 1313, 1395, 1501
BseLI CCNNNNNNNGG 4 cut(s) 310, 451, 822, 1255
BseMI GCAATG 2 cut(s) 76, 1036
BseMII CTCAG 4 cut(s) 528, 905, 921, 1362
BseNI ACTGG 3 cut(s) 442, 1244, 1454
BseRI GAGGAG 2 cut(s) 161, 455
BseSI GKGCMC 1 cut(s) 379
BseXI GCAGC 8 cut(s) 65, 172, 647, 838, 997, 1019, 1073, 1519
BseYI CCCAGC 3 cut(s) 666, 685, 911
BsgI GTGCAG 1 cut(s) 363
Bsh1236I CGCG 2 cut(s) 1140, 1482
BshNI GGYRCC 1 cut(s) 374
BsiHKAI GWGCWC 1 cut(s) 1131
BsiHKCI CYCGRG 1 cut(s) 95
BsiSI CCGG 4 cut(s) 44, 50, 249, 1254
BsiWI CGTACG 1 cut(s) 1442
BslI CCNNNNNNNGG 4 cut(s) 310, 451, 822, 1255
BsmAI GTCTC 5 cut(s) 9, 69, 344, 545, 1195
BsmBI CGTCTC 1 cut(s) 69
BsmI GAATGC 1 cut(s) 1064
Bso31I GGTCTC 1 cut(s) 545
BsoBI CYCGRG 1 cut(s) 95
Bsp1286I GDGCHC 3 cut(s) 379, 751, 1131
Bsp1407I TGTACA 1 cut(s) 678
Bsp143I GATC 1 cut(s) 156
BspCNI CTCAG 4 cut(s) 527, 904, 922, 1363
BspFNI CGCG 2 cut(s) 1140, 1482
BspLI GGNNCC 4 cut(s) 48, 376, 615, 748
BspPI GGATC 1 cut(s) 164
BspT107I GGYRCC 1 cut(s) 374
BspTNI GGTCTC 1 cut(s) 545
BsrDI GCAATG 2 cut(s) 76, 1036
BsrFI RCCGGY 2 cut(s) 49, 248
BsrGI TGTACA 1 cut(s) 678
BsrI ACTGG 3 cut(s) 442, 1244, 1454
BssAI RCCGGY 2 cut(s) 49, 248
BssECI CCNNGG 4 cut(s) 507, 1182, 1254, 1363
BssMI GATC 1 cut(s) 156
BssSI CACGAG 1 cut(s) 237
BssT1I CCWWGG 2 cut(s) 1182, 1363
Bst2BI CACGAG 1 cut(s) 237
Bst4CI ACNGT 5 cut(s) 80, 374, 539, 1177, 1428
BstAUI TGTACA 1 cut(s) 678
BstBAI YACGTR 1 cut(s) 1318
BstC8I GCNNGC 6 cut(s) 250, 273, 366, 813, 936, 1281
BstDEI CTNAG 6 cut(s) 31, 514, 891, 930, 1096, 1371
BstDSI CCRYGG 1 cut(s) 507
BstF5I GGATG 5 cut(s) 300, 543, 1313, 1395, 1501
BstFNI CGCG 2 cut(s) 1140, 1482
BstKTI GATC 1 cut(s) 159
BstMAI GTCTC 5 cut(s) 9, 69, 344, 545, 1195
BstMBI GATC 1 cut(s) 156
BstMWI GCNNNNNNNGC 9 cut(s) 191, 258, 297, 374, 518, 620, 793, 857, 1289
BstNSI RCATGY 2 cut(s) 394, 964
BstSCI CCNGG 1 cut(s) 1253
BstSLI GKGCMC 1 cut(s) 379
BstSNI TACGTA 1 cut(s) 1318
BstUI CGCG 2 cut(s) 1140, 1482
BstV1I GCAGC 8 cut(s) 65, 172, 647, 838, 997, 1019, 1073, 1519
BstV2I GAAGAC 1 cut(s) 235
BtgI CCRYGG 1 cut(s) 507
BtsCI GGATG 5 cut(s) 300, 543, 1313, 1395, 1501
BtsI GCAGTG 1 cut(s) 351
BtsIMutI CAGTG 4 cut(s) 351, 435, 785, 811
Cac8I GCNNGC 6 cut(s) 250, 273, 366, 813, 936, 1281
Cfr10I RCCGGY 2 cut(s) 49, 248
Cfr13I GGNCC 1 cut(s) 613
Csp6I GTAC 3 cut(s) 679, 886, 1443
CspCI CAANNNNNGTGG 2 cut(s) 489, 524
CviAII CATG 9 cut(s) 145, 153, 223, 325, 334, 391, 961, 985, 1332
CviQI GTAC 3 cut(s) 679, 886, 1443
DdeI CTNAG 6 cut(s) 31, 514, 891, 930, 1096, 1371
DpnI GATC 1 cut(s) 158
DpnII GATC 1 cut(s) 156
EaeI YGGCCR 6 cut(s) 147, 250, 273, 951, 1179, 1212
Eco105I TACGTA 1 cut(s) 1318
Eco130I CCWWGG 2 cut(s) 1182, 1363
Eco24I GRGCYC 1 cut(s) 751
Eco31I GGTCTC 1 cut(s) 545
Eco88I CYCGRG 1 cut(s) 95
EcoRI GAATTC 1 cut(s) 1326
EcoT14I CCWWGG 2 cut(s) 1182, 1363
EcoT22I ATGCAT 1 cut(s) 962
EcoT38I GRGCYC 1 cut(s) 751
ErhI CCWWGG 2 cut(s) 1182, 1363
Esp3I CGTCTC 1 cut(s) 69
FaeI CATG 9 cut(s) 148, 156, 226, 328, 337, 394, 964, 988, 1335
FalI AAGNNNNNCTT 2 cut(s) 158, 190
FatI CATG 9 cut(s) 144, 152, 222, 324, 333, 390, 960, 984, 1331
FauI CCCGC 1 cut(s) 199
FauNDI CATATG 1 cut(s) 1294
FblI GTMKAC 1 cut(s) 534
FokI GGATG 5 cut(s) 287, 530, 1320, 1402, 1508
FriOI GRGCYC 1 cut(s) 751
FspBI CTAG 4 cut(s) 329, 701, 899, 1037
GsaI CCCAGC 3 cut(s) 670, 689, 915
GsuI CTGGAG 1 cut(s) 49
HapII CCGG 4 cut(s) 44, 50, 249, 1254
Hin1II CATG 9 cut(s) 148, 156, 226, 328, 337, 394, 964, 988, 1335
HinfI GANTC 6 cut(s) 35, 86, 138, 352, 1048, 1237
HpaII CCGG 4 cut(s) 44, 50, 249, 1254
HphI GGTGA 6 cut(s) 781, 874, 1036, 1153, 1181, 1474
Hpy166II GTNNAC 6 cut(s) 85, 535, 679, 760, 888, 1465
Hpy188I TCNGA 2 cut(s) 40, 112
Hpy188III TCNNGA 5 cut(s) 8, 97, 266, 929, 1112
Hpy8I GTNNAC 6 cut(s) 85, 535, 679, 760, 888, 1465
Hpy99I CGWCG 1 cut(s) 1145
HpyAV CCTTC 3 cut(s) 94, 416, 1168
HpyCH4III ACNGT 5 cut(s) 80, 374, 539, 1177, 1428
HpyCH4IV ACGT 2 cut(s) 1143, 1317
HpyCH4V TGCA 8 cut(s) 344, 652, 811, 854, 960, 1007, 1013, 1411
HpyF10VI GCNNNNNNNGC 9 cut(s) 191, 258, 297, 374, 518, 620, 793, 857, 1289
HpyF3I CTNAG 6 cut(s) 31, 514, 891, 930, 1096, 1371
HpySE526I ACGT 2 cut(s) 1143, 1317
Hsp92II CATG 9 cut(s) 148, 156, 226, 328, 337, 394, 964, 988, 1335
KroI GCCGGC 1 cut(s) 248
KroNI GCCGGC 1 cut(s) 250
Kzo9I GATC 1 cut(s) 156
LmnI GCTCC 2 cut(s) 174, 746
Lsp1109I GCAGC 8 cut(s) 65, 172, 647, 838, 997, 1019, 1073, 1519
LweI GCATC 2 cut(s) 309, 863
MaeI CTAG 4 cut(s) 329, 701, 899, 1037
MaeII ACGT 2 cut(s) 1143, 1317
MaeIII GTNAC 4 cut(s) 225, 1081, 1216, 1432
MalI GATC 1 cut(s) 158
MboI GATC 1 cut(s) 156
MboII GAAGA 1 cut(s) 235
MfeI CAATTG 1 cut(s) 119
MhlI GDGCHC 3 cut(s) 379, 751, 1131
MlsI TGGCCA 2 cut(s) 149, 1181
MluCI AATT 4 cut(s) 119, 606, 1326, 1419
MluNI TGGCCA 2 cut(s) 149, 1181
MlyI GAGTC 4 cut(s) 29, 80, 132, 346
MmeI TCCRAC 4 cut(s) 135, 328, 724, 1303
Mox20I TGGCCA 2 cut(s) 149, 1181
Mph1103I ATGCAT 1 cut(s) 962
MroNI GCCGGC 1 cut(s) 248
MscI TGGCCA 2 cut(s) 149, 1181
MseI TTAA 4 cut(s) 213, 395, 968, 1418
MslI CAYNNNNRTG 2 cut(s) 767, 893
Msp20I TGGCCA 2 cut(s) 149, 1181
MspA1I CMGCKG 3 cut(s) 297, 1010, 1167
MspI CCGG 4 cut(s) 44, 50, 249, 1254
MspR9I CCNGG 1 cut(s) 1255
MunI CAATTG 1 cut(s) 119
Mva1269I GAATGC 1 cut(s) 1064
MvnI CGCG 2 cut(s) 1140, 1482
MwoI GCNNNNNNNGC 9 cut(s) 191, 258, 297, 374, 518, 620, 793, 857, 1289
NaeI GCCGGC 1 cut(s) 250
NciI CCSGG 1 cut(s) 1255
NdeI CATATG 1 cut(s) 1294
NdeII GATC 1 cut(s) 156
NgoMIV GCCGGC 1 cut(s) 248
NlaIII CATG 9 cut(s) 148, 156, 226, 328, 337, 394, 964, 988, 1335
NlaIV GGNNCC 4 cut(s) 48, 376, 615, 748
NmeAIII GCCGAG 3 cut(s) 237, 267, 471
NmuCI GTSAC 2 cut(s) 225, 1216
NsiI ATGCAT 1 cut(s) 962
NspI RCATGY 2 cut(s) 394, 964
OliI CACNNNNGTG 1 cut(s) 893
PaeR7I CTCGAG 1 cut(s) 95
PciI ACATGT 1 cut(s) 390
PctI GAATGC 1 cut(s) 1064
PdiI GCCGGC 1 cut(s) 250
PfeI GAWTC 2 cut(s) 1048, 1237
Pfl23II CGTACG 1 cut(s) 1442
PflMI CCANNNNNTGG 1 cut(s) 310
PleI GAGTC 4 cut(s) 29, 80, 132, 346
PpsI GAGTC 4 cut(s) 29, 80, 132, 346
Ppu21I YACGTR 1 cut(s) 1318
PscI ACATGT 1 cut(s) 390
PspFI CCCAGC 3 cut(s) 666, 685, 911
PspLI CGTACG 1 cut(s) 1442
PspN4I GGNNCC 4 cut(s) 48, 376, 615, 748
PspPI GGNCC 1 cut(s) 613
PvuII CAGCTG 1 cut(s) 1010
RsaI GTAC 3 cut(s) 680, 887, 1444
RsaNI GTAC 3 cut(s) 679, 886, 1443
RseI CAYNNNNRTG 2 cut(s) 767, 893
SaqAI TTAA 4 cut(s) 213, 395, 968, 1418
Sau3AI GATC 1 cut(s) 156
Sau96I GGNCC 1 cut(s) 613
SchI GAGTC 4 cut(s) 29, 80, 132, 346
ScrFI CCNGG 1 cut(s) 1255
SduI GDGCHC 3 cut(s) 379, 751, 1131
SfaNI GCATC 2 cut(s) 309, 863
Sfr274I CTCGAG 1 cut(s) 95
SlaI CTCGAG 1 cut(s) 95
SmiMI CAYNNNNRTG 2 cut(s) 767, 893
SmlI CTYRAG 4 cut(s) 6, 95, 164, 266
SmoI CTYRAG 4 cut(s) 6, 95, 164, 266
SnaBI TACGTA 1 cut(s) 1318
Sse9I AATT 4 cut(s) 119, 606, 1326, 1419
SspI AATATT 1 cut(s) 555
SspMI CTAG 4 cut(s) 329, 701, 899, 1037
StyD4I CCNGG 1 cut(s) 1253
StyI CCWWGG 2 cut(s) 1182, 1363
TaaI ACNGT 5 cut(s) 80, 374, 539, 1177, 1428
TaiI ACGT 2 cut(s) 1146, 1320
TaqI TCGA 3 cut(s) 96, 159, 1359
TasI AATT 4 cut(s) 119, 606, 1326, 1419
TatI WGTACW 1 cut(s) 678
TauI GCSGC 6 cut(s) 278, 281, 300, 521, 524, 1338
TfiI GAWTC 2 cut(s) 1048, 1237
Tru1I TTAA 4 cut(s) 213, 395, 968, 1418
Tru9I TTAA 4 cut(s) 213, 395, 968, 1418
TscAI CASTG 4 cut(s) 351, 442, 785, 811
TseFI GTSAC 2 cut(s) 225, 1216
TseI GCWGC 8 cut(s) 53, 185, 635, 851, 1007, 1010, 1061, 1507
Tsp45I GTSAC 2 cut(s) 225, 1216
TspDTI ATGAA 1 cut(s) 973
TspGWI ACGGA 1 cut(s) 1460
TspRI CASTG 4 cut(s) 351, 442, 785, 811
Van91I CCANNNNNTGG 1 cut(s) 310
XapI RAATTY 1 cut(s) 1326
XceI RCATGY 2 cut(s) 394, 964
XcmI CCANNNNNNNNNTGG 1 cut(s) 1480
XhoI CTCGAG 1 cut(s) 95
XmiI GTMKAC 1 cut(s) 534
XspI CTAG 4 cut(s) 329, 701, 899, 1037
Zsp2I ATGCAT 1 cut(s) 962
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.