Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00001146

Orthogroup ID

OG0012671

Physical Location & Seq

Genomic Coordinates Reverse (-)

25969 .. 26645

Gene Structure 677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom1146g00020.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGTTGCGCATGGCTACCTGTGCAGCCACCATGTTGTGGTGCCAAGCATCAACACTGTATTACCGAATTTTAAGCATAACGAAAAGGAGATTCCCACAAACTTAGACTTGGCAGAGGAAGAGATCGATAAGATTATCACCTGCATTGAGACCTGGTTTGGTACTGACGTGATTATGAAAAAAGCTGCTATCAAAAAAAGCTGGGAGCTATTTTTGTGTTTGGTAAACACTCAGCTTCAGCTTTTTTTCACAGTTTTGGATGAAAAAAAGCCAAAAACAAGAAGCTGCAAAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

99

Amino Acids

11.27

Weight (kDa)

6.89

Isoelectric Point (pI)

30.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012671)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g11840 pycom02g19230 pycom03g18770 pycom04g15630 pycom04g19590 pycom06g01140 pycom07g19170 pycom1146g00020 pycom12g13500 pycom12g15480 pycom12g15620 pycom13g24290 pycom14g04610 pycom16g10630 pycom17g07900 pycom17g17160
rosa_samantha	Rh7AG153500 Rh7BG154700 Rh7CG158800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	149
Acc16I	TGCGCA	1 cut(s)	9
Acc36I	ACCTGC	1 cut(s)	149
AccB1I	GGYRCC	1 cut(s)	40
AccB7I	CCANNNNNTGG	1 cut(s)	37
AcsI	RAATTY	1 cut(s)	67
AcuI	CTGAAG	1 cut(s)	221
AfaI	GTAC	1 cut(s)	163
AfiI	CCNNNNNNNGG	1 cut(s)	37
AjiI	CACGTC	1 cut(s)	169
AjnI	CCWGG	1 cut(s)	152
AluBI	AGCT	6 cut(s)	185, 201, 208, 235, 241, 285
AluI	AGCT	6 cut(s)	185, 201, 208, 235, 241, 285
Alw26I	GTCTC	1 cut(s)	143
ApeKI	GCWGC	3 cut(s)	24, 185, 285
ApoI	RAATTY	1 cut(s)	67
AspLEI	GCGC	1 cut(s)	10
AsuHPI	GGTGA	1 cut(s)	130
BaeI	ACNNNNGTAYC	2 cut(s)	153, 186
BanI	GGYRCC	1 cut(s)	40
BbvI	GCAGC	3 cut(s)	36, 172, 272
BciT130I	CCWGG	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	143
BfaI	CTAG	1 cut(s)	295
BfuAI	ACCTGC	1 cut(s)	149
BisI	GCNGC	3 cut(s)	25, 186, 286
BlsI	GCNGC	3 cut(s)	26, 187, 287
Bme1390I	CCNGG	1 cut(s)	154
BmgBI	CACGTC	1 cut(s)	169
BmiI	GGNNCC	1 cut(s)	42
BmrFI	CCNGG	1 cut(s)	154
BmsI	GCATC	1 cut(s)	57
Bsa29I	ATCGAT	1 cut(s)	126
BsaI	GGTCTC	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
BseBI	CCWGG	1 cut(s)	154
BseCI	ATCGAT	1 cut(s)	126
BseGI	GGATG	1 cut(s)	265
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMII	CTCAG	1 cut(s)	245
BseXI	GCAGC	3 cut(s)	36, 172, 272
BseYI	CCCAGC	1 cut(s)	201
BsgI	GTGCAG	1 cut(s)	43
BshNI	GGYRCC	1 cut(s)	40
BshVI	ATCGAT	1 cut(s)	126
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmAI	GTCTC	1 cut(s)	143
Bso31I	GGTCTC	1 cut(s)	143
Bsp143I	GATC	1 cut(s)	123
BspCNI	CTCAG	1 cut(s)	244
BspDI	ATCGAT	1 cut(s)	126
BspLI	GGNNCC	1 cut(s)	42
BspMI	ACCTGC	1 cut(s)	149
BspT107I	GGYRCC	1 cut(s)	40
BspTNI	GGTCTC	1 cut(s)	143
BssMI	GATC	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	154
Bst4CI	ACNGT	2 cut(s)	58, 253
Bst6I	CTCTTC	1 cut(s)	114
BstDEI	CTNAG	2 cut(s)	103, 231
BstF5I	GGATG	1 cut(s)	265
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	1 cut(s)	126
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	1 cut(s)	123
BstMWI	GCNNNNNNNGC	1 cut(s)	21
BstNI	CCWGG	1 cut(s)	154
BstSCI	CCNGG	1 cut(s)	152
BstV1I	GCAGC	3 cut(s)	36, 172, 272
Bsu15I	ATCGAT	1 cut(s)	126
BsuTUI	ATCGAT	1 cut(s)	126
BtrI	CACGTC	1 cut(s)	169
BtsCI	GGATG	1 cut(s)	265
BtsIMutI	CAGTG	1 cut(s)	54
BveI	ACCTGC	1 cut(s)	149
CfoI	GCGC	1 cut(s)	10
ClaI	ATCGAT	1 cut(s)	126
CsiI	ACCWGGT	1 cut(s)	152
Csp6I	GTAC	1 cut(s)	162
CviAII	CATG	2 cut(s)	11, 32
CviJI	RGCY	9 cut(s)	15, 27, 185, 201, 208, 235, 241, 271, 285
CviKI_1	RGCY	9 cut(s)	15, 27, 185, 201, 208, 235, 241, 271, 285
CviQI	GTAC	1 cut(s)	162
DdeI	CTNAG	2 cut(s)	103, 231
DpnI	GATC	1 cut(s)	125
DpnII	GATC	1 cut(s)	123
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Eco31I	GGTCTC	1 cut(s)	143
Eco57I	CTGAAG	1 cut(s)	221
EcoRII	CCWGG	1 cut(s)	152
FaeI	CATG	2 cut(s)	14, 35
FaiI	YATR	4 cut(s)	12, 33, 78, 176
FatI	CATG	2 cut(s)	10, 31
Fnu4HI	GCNGC	3 cut(s)	25, 186, 286
FokI	GGATG	1 cut(s)	272
Fsp4HI	GCNGC	3 cut(s)	25, 186, 286
FspBI	CTAG	1 cut(s)	295
FspI	TGCGCA	1 cut(s)	9
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	3 cut(s)	25, 186, 286
GsaI	CCCAGC	1 cut(s)	205
HhaI	GCGC	1 cut(s)	10
Hin1II	CATG	2 cut(s)	14, 35
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HinfI	GANTC	1 cut(s)	91
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	1 cut(s)	226
Hpy8I	GTNNAC	1 cut(s)	226
HpyCH4III	ACNGT	2 cut(s)	58, 253
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	3 cut(s)	24, 144, 288
HpyF10VI	GCNNNNNNNGC	1 cut(s)	21
HpyF3I	CTNAG	2 cut(s)	103, 231
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	2 cut(s)	14, 35
HspAI	GCGC	1 cut(s)	8
Kzo9I	GATC	1 cut(s)	123
LmnI	GCTCC	1 cut(s)	205
LpnPI	CCDG	5 cut(s)	32, 139, 154, 166, 187
Lsp1109I	GCAGC	3 cut(s)	36, 172, 272
LweI	GCATC	1 cut(s)	57
MabI	ACCWGGT	1 cut(s)	152
MaeI	CTAG	1 cut(s)	295
MaeII	ACGT	1 cut(s)	168
MalI	GATC	1 cut(s)	125
MboI	GATC	1 cut(s)	123
MboII	GAAGA	1 cut(s)	131
MluCI	AATT	1 cut(s)	67
MnlI	CCTC	1 cut(s)	109
MseI	TTAA	1 cut(s)	72
MspR9I	CCNGG	1 cut(s)	154
MvaI	CCWGG	1 cut(s)	154
MwoI	GCNNNNNNNGC	1 cut(s)	21
NdeII	GATC	1 cut(s)	123
NlaIII	CATG	2 cut(s)	14, 35
NlaIV	GGNNCC	1 cut(s)	42
NsbI	TGCGCA	1 cut(s)	9
PaqCI	CACCTGC	1 cut(s)	149
PfeI	GAWTC	1 cut(s)	91
PflMI	CCANNNNNTGG	1 cut(s)	37
PkrI	GCNGC	3 cut(s)	26, 187, 287
Psp6I	CCWGG	1 cut(s)	152
PspFI	CCCAGC	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	152
PspN4I	GGNNCC	1 cut(s)	42
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	3 cut(s)	25, 186, 286
Sau3AI	GATC	1 cut(s)	123
ScrFI	CCNGG	1 cut(s)	154
SexAI	ACCWGGT	1 cut(s)	152
SfaNI	GCATC	1 cut(s)	57
Sse9I	AATT	1 cut(s)	67
SspMI	CTAG	1 cut(s)	295
StyD4I	CCNGG	1 cut(s)	152
TaaI	ACNGT	2 cut(s)	58, 253
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	1 cut(s)	126
TasI	AATT	1 cut(s)	67
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	1 cut(s)	61
TseI	GCWGC	3 cut(s)	24, 185, 285
TspDTI	ATGAA	2 cut(s)	191, 276
TspRI	CASTG	1 cut(s)	61
Van91I	CCANNNNNTGG	1 cut(s)	37
XapI	RAATTY	1 cut(s)	67
XspI	CTAG	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.