pycom17g17160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0012671
Physical Location & Seq
Forward (+)
15003590 .. 15005137
1548 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g17160.10

Sequence Viewer

Length: 1107 bp
ATGCGTTATGACATTTTTCACGCCCTGTCGCGCGCGTCGATCGAATTGAAGGGGTATTTTTTCGCACGCCCCGCGCCCACCTGTTTCTTTTTGGGAAACCAAAATCCTTTCGTGGAGGAATGTACTAGGGTTACCCCATTGGTTTCGGTTGCAAATATCGAGAGAGGATCCGATTTAGCTAAGATCTTTGATCATATTTATTCATCGTGCATTGTGCAGTTAGTTTTCATTAGGTACTTTTTTATCGTACGATATATGATAAACAAATGTGATTTAAAGATCCTCGTCAAATCCTCTCTCGCAAATATTACTTTACGATTTAGTGATGTTTGTCTTCACTTGTCAATTCTCTTCAAAAGAGAATTTGAATCACATAATTGCAAGCACATTCTAAGGTTAAGCTCAAACCCTTCTCATTTAGTGCAAATATCTCTTGAAATTGATCTAGTTCAGGGTATCTTCAATAAGGGATTTATATTTCATACTATTACATATGAAGTCCCAGTGAGAAATTTATCCCAATGGGCCAAAAAATCTAAAAATTATGCTACATCCAACCCAAAAAGCAATGGGTCCTACATGAAAAGTAGTTGTGATTCTGAAAAAAGCTGGTATAAAAAAAGTTGGGAGCTGTTTTTGTGTTTGGTAAACATTCAGCTTCAGCTTTTTTTCACAGTTTTGGGTGAAAAAAAGCCAAAAACAAGAACTATTTTTCATAAAAGTTTACCAAACACTATAATACTGGTTTTTTTTTTTCAAAAGCACTTTTATAAAAACGTTTACCAAACACTCTGCTGCTTTATTTCACAGCTGCTTATTCTCACAGCACAGCATAATCAGTTTTTTTTCAAAGCACAGCAATACCAAACCAGCCCTCTATCCCCTTGTGAATACATTTATAATCTTATTTTATTCTTCTTTTTCATTTTTCTTTTACATATTTTTGTTCCAAAGATCCTCCTTCATTTTGTTAGTGTGAGATTAAGAGAAATAAATAGAACAAAGTGGTTGTTTAAGGATTTAAAGACTTCTTGTTGTATACAAACTGCAGAAACAACCTGTACTGTAAAATTCACCAAAAATAAATCGTCTAAGCAAAAAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

369

Amino Acids

43.24

Weight (kDa)

9.59

Isoelectric Point (pI)

49.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 771, 900
AccI GTMKAC 1 cut(s) 1039
AccII CGCG 4 cut(s) 31, 33, 35, 74
AciI CCGC 1 cut(s) 72
AclI AACGTT 1 cut(s) 777
AclWI GGATC 4 cut(s) 162, 175, 274, 949
AcsI RAATTY 3 cut(s) 362, 511, 1070
AcuI CTGAAG 1 cut(s) 644
AfaI GTAC 4 cut(s) 124, 236, 249, 1063
AgsI TTSAA 7 cut(s) 49, 355, 368, 437, 463, 758, 850
AluBI AGCT 7 cut(s) 179, 402, 609, 631, 658, 664, 811
AluI AGCT 7 cut(s) 179, 402, 609, 631, 658, 664, 811
AlwI GGATC 4 cut(s) 162, 175, 274, 949
AoxI GGCC 1 cut(s) 525
ApeKI GCWGC 2 cut(s) 795, 811
ApoI RAATTY 3 cut(s) 362, 511, 1070
AspLEI GCGC 3 cut(s) 33, 35, 76
AspS9I GGNCC 2 cut(s) 525, 573
AsuHPI GGTGA 2 cut(s) 695, 1066
AvaII GGWCC 1 cut(s) 573
BamHI GGATCC 1 cut(s) 167
BbsI GAAGAC 1 cut(s) 326
BbvI GCAGC 2 cut(s) 782, 798
BclI TGATCA 1 cut(s) 190
BfaI CTAG 2 cut(s) 126, 446
BfmI CTRYAG 1 cut(s) 1047
BglII AGATCT 1 cut(s) 183
BisI GCNGC 2 cut(s) 796, 812
BlsI GCNGC 2 cut(s) 797, 813
Bme18I GGWCC 1 cut(s) 573
BmgT120I GGNCC 2 cut(s) 525, 573
BmiI GGNNCC 2 cut(s) 169, 574
BmrI ACTGGG 1 cut(s) 497
BmuI ACTGGG 1 cut(s) 497
BpiI GAAGAC 1 cut(s) 326
Bse1I ACTGG 2 cut(s) 503, 747
Bse3DI GCAATG 1 cut(s) 574
BseGI GGATG 1 cut(s) 551
BseMI GCAATG 1 cut(s) 574
BseNI ACTGG 2 cut(s) 503, 747
BsePI GCGCGC 1 cut(s) 31
BseXI GCAGC 2 cut(s) 782, 798
BsgI GTGCAG 1 cut(s) 236
Bsh1236I CGCG 4 cut(s) 31, 33, 35, 74
Bsh1285I CGRYCG 1 cut(s) 42
BshFI GGCC 1 cut(s) 527
BsiEI CGRYCG 1 cut(s) 42
BsiWI CGTACG 1 cut(s) 247
BslFI GGGAC 1 cut(s) 485
BsmFI GGGAC 1 cut(s) 485
BsnI GGCC 1 cut(s) 527
Bsp143I GATC 7 cut(s) 39, 167, 183, 190, 279, 442, 954
BspACI CCGC 1 cut(s) 72
BspANI GGCC 1 cut(s) 527
BspFNI CGCG 4 cut(s) 31, 33, 35, 74
BspLI GGNNCC 2 cut(s) 169, 574
BspMAI CTGCAG 1 cut(s) 1051
BspPI GGATC 4 cut(s) 162, 175, 274, 949
BsrDI GCAATG 1 cut(s) 574
BsrI ACTGG 2 cut(s) 503, 747
BssHII GCGCGC 1 cut(s) 31
BssMI GATC 7 cut(s) 39, 167, 183, 190, 279, 442, 954
BssNAI GTATAC 1 cut(s) 1040
Bst1107I GTATAC 1 cut(s) 1040
Bst4CI ACNGT 2 cut(s) 676, 1066
Bst6I CTCTTC 1 cut(s) 356
BstC8I GCNNGC 3 cut(s) 33, 67, 383
BstDEI CTNAG 3 cut(s) 180, 392, 1092
BstEII GGTNACC 1 cut(s) 130
BstF5I GGATG 1 cut(s) 551
BstFNI CGCG 4 cut(s) 31, 33, 35, 74
BstHHI GCGC 3 cut(s) 33, 35, 76
BstKTI GATC 7 cut(s) 42, 170, 186, 193, 282, 445, 957
BstMBI GATC 7 cut(s) 39, 167, 183, 190, 279, 442, 954
BstMCI CGRYCG 1 cut(s) 42
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstPI GGTNACC 1 cut(s) 130
BstSFI CTRYAG 1 cut(s) 1047
BstUI CGCG 4 cut(s) 31, 33, 35, 74
BstV1I GCAGC 2 cut(s) 782, 798
BstV2I GAAGAC 1 cut(s) 326
BstX2I RGATCY 4 cut(s) 167, 183, 279, 954
BstYI RGATCY 4 cut(s) 167, 183, 279, 954
BstZ17I GTATAC 1 cut(s) 1040
BsuRI GGCC 1 cut(s) 527
BtsCI GGATG 1 cut(s) 551
BtsIMutI CAGTG 1 cut(s) 510
Cac8I GCNNGC 3 cut(s) 33, 67, 383
CfoI GCGC 3 cut(s) 33, 35, 76
Cfr13I GGNCC 2 cut(s) 525, 573
CseI GACGC 1 cut(s) 24
Csp6I GTAC 4 cut(s) 123, 235, 248, 1062
CviAII CATG 1 cut(s) 580
CviQI GTAC 4 cut(s) 123, 235, 248, 1062
DdeI CTNAG 3 cut(s) 180, 392, 1092
DpnI GATC 7 cut(s) 41, 169, 185, 192, 281, 444, 956
DpnII GATC 7 cut(s) 39, 167, 183, 190, 279, 442, 954
DraI TTTAAA 2 cut(s) 276, 1023
Eam1104I CTCTTC 1 cut(s) 356
EarI CTCTTC 1 cut(s) 356
Eco47I GGWCC 1 cut(s) 573
Eco57I CTGAAG 1 cut(s) 644
Eco91I GGTNACC 1 cut(s) 130
EcoO109I RGGNCCY 1 cut(s) 573
EcoO65I GGTNACC 1 cut(s) 130
FaeI CATG 1 cut(s) 583
FaqI GGGAC 1 cut(s) 485
FatI CATG 1 cut(s) 579
FauI CCCGC 1 cut(s) 79
FauNDI CATATG 1 cut(s) 493
FbaI TGATCA 1 cut(s) 190
FblI GTMKAC 1 cut(s) 1039
Fnu4HI GCNGC 2 cut(s) 796, 812
FokI GGATG 1 cut(s) 538
Fsp4HI GCNGC 2 cut(s) 796, 812
FspBI CTAG 2 cut(s) 126, 446
GlaI GCGC 3 cut(s) 32, 34, 75
GluI GCNGC 2 cut(s) 796, 812
HaeIII GGCC 1 cut(s) 527
HgaI GACGC 1 cut(s) 24
HhaI GCGC 3 cut(s) 33, 35, 76
Hin1II CATG 1 cut(s) 583
Hin6I GCGC 3 cut(s) 31, 33, 74
HinP1I GCGC 3 cut(s) 31, 33, 74
HinfI GANTC 2 cut(s) 368, 596
HphI GGTGA 2 cut(s) 695, 1066
Hpy166II GTNNAC 4 cut(s) 649, 725, 781, 1040
Hpy188I TCNGA 2 cut(s) 172, 601
Hpy188III TCNNGA 2 cut(s) 160, 434
Hpy8I GTNNAC 4 cut(s) 649, 725, 781, 1040
Hpy99I CGWCG 1 cut(s) 40
HpyAV CCTTC 3 cut(s) 43, 420, 971
HpyCH4III ACNGT 2 cut(s) 676, 1066
HpyCH4IV ACGT 1 cut(s) 777
HpyCH4V TGCA 6 cut(s) 152, 210, 217, 381, 424, 1049
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 3 cut(s) 180, 392, 1092
HpySE526I ACGT 1 cut(s) 777
Hsp92II CATG 1 cut(s) 583
HspAI GCGC 3 cut(s) 31, 33, 74
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 7 cut(s) 39, 167, 183, 190, 279, 442, 954
LmnI GCTCC 1 cut(s) 628
LpnPI CCDG 8 cut(s) 38, 94, 437, 516, 595, 728, 883, 1072
Lsp1109I GCAGC 2 cut(s) 782, 798
MaeI CTAG 2 cut(s) 126, 446
MaeII ACGT 1 cut(s) 777
MaeIII GTNAC 1 cut(s) 130
MalI GATC 7 cut(s) 41, 169, 185, 192, 281, 444, 956
MauBI CGCGCGCG 1 cut(s) 31
MboI GATC 7 cut(s) 39, 167, 183, 190, 279, 442, 954
MboII GAAGA 4 cut(s) 326, 343, 451, 907
MflI RGATCY 4 cut(s) 167, 183, 279, 954
MluCI AATT 8 cut(s) 44, 345, 362, 376, 438, 511, 541, 1070
MmeI TCCRAC 1 cut(s) 579
MnlI CCTC 6 cut(s) 109, 158, 293, 304, 885, 968
MseI TTAA 5 cut(s) 275, 398, 983, 1014, 1022
MspA1I CMGCKG 1 cut(s) 811
MvnI CGCG 4 cut(s) 31, 33, 35, 74
MwoI GCNNNNNNNGC 1 cut(s) 71
NdeI CATATG 1 cut(s) 493
NdeII GATC 7 cut(s) 39, 167, 183, 190, 279, 442, 954
NlaIII CATG 1 cut(s) 583
NlaIV GGNNCC 2 cut(s) 169, 574
PauI GCGCGC 1 cut(s) 31
PcsI WCGNNNNNNNCGW 1 cut(s) 35
PfeI GAWTC 2 cut(s) 368, 596
Pfl23II CGTACG 1 cut(s) 247
PkrI GCNGC 2 cut(s) 797, 813
Ple19I CGATCG 1 cut(s) 42
PpuMI RGGWCCY 1 cut(s) 573
PsiI TTATAA 2 cut(s) 771, 900
Psp1406I AACGTT 1 cut(s) 777
Psp5II RGGWCCY 1 cut(s) 573
PspEI GGTNACC 1 cut(s) 130
PspLI CGTACG 1 cut(s) 247
PspN4I GGNNCC 2 cut(s) 169, 574
PspPI GGNCC 2 cut(s) 525, 573
PspPPI RGGWCCY 1 cut(s) 573
PstI CTGCAG 1 cut(s) 1051
PsuI RGATCY 4 cut(s) 167, 183, 279, 954
PteI GCGCGC 1 cut(s) 31
PvuI CGATCG 1 cut(s) 42
PvuII CAGCTG 1 cut(s) 811
RsaI GTAC 4 cut(s) 124, 236, 249, 1063
RsaNI GTAC 4 cut(s) 123, 235, 248, 1062
SaqAI TTAA 5 cut(s) 275, 398, 983, 1014, 1022
SatI GCNGC 2 cut(s) 796, 812
Sau3AI GATC 7 cut(s) 39, 167, 183, 190, 279, 442, 954
Sau96I GGNCC 2 cut(s) 525, 573
SfcI CTRYAG 1 cut(s) 1047
SinI GGWCC 1 cut(s) 573
Sse9I AATT 8 cut(s) 44, 345, 362, 376, 438, 511, 541, 1070
SsiI CCGC 1 cut(s) 72
SspI AATATT 1 cut(s) 307
SspMI CTAG 2 cut(s) 126, 446
TaaI ACNGT 2 cut(s) 676, 1066
TaiI ACGT 1 cut(s) 780
TaqI TCGA 3 cut(s) 38, 42, 159
TasI AATT 8 cut(s) 44, 345, 362, 376, 438, 511, 541, 1070
TatI WGTACW 2 cut(s) 122, 1061
TfiI GAWTC 2 cut(s) 368, 596
Tru1I TTAA 5 cut(s) 275, 398, 983, 1014, 1022
Tru9I TTAA 5 cut(s) 275, 398, 983, 1014, 1022
TscAI CASTG 1 cut(s) 510
TseI GCWGC 2 cut(s) 795, 811
TspDTI ATGAA 8 cut(s) 192, 217, 470, 510, 596, 704, 913, 953
TspRI CASTG 1 cut(s) 510
VpaK11BI GGWCC 1 cut(s) 573
XapI RAATTY 3 cut(s) 362, 511, 1070
XmiI GTMKAC 1 cut(s) 1039
XspI CTAG 2 cut(s) 126, 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.