Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0012671

Physical Location & Seq

Genomic Coordinates Forward (+)

7281609 .. 7283204

Gene Structure 1596 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g10630.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGTCTCATTTAAATTGTTGTTGGTACTTTGCTAGAATAAGGGACAATAATGACTTGCATTCTTGTACACAGCCGTTTTGGAGGCTATGGAATCCTGCTGGCAGTGGTGGTCATGGCGTTATAGGTGTTTTGGAAGCTAATTTTGTTGAACCAGCTCACGACAAACAGGGATTTGAGCAGACAACTGTGCTTTCAAGACCAGAGATAAAATTGGTTAAAATTCAAAAGGATTACTGGTGCAAAAATTGCCAGACTGTTGGTTATGCTCCAAGAAGACGTACTACTGATTTTCCAGAAGTGTCTGGTAGAGGCAAATCCTGTCTCGTAAATCAGAACTGCCATGGTTCTAAGTTCAGCAACAAACTTGATAAGGGATCGTCACCCGTAAATGCTTCAAGTGAAGATGGGATCTATGAAAGAGTCCCTCAAATGCTTACGCGTTCAGTCAAAGGCATTTTATTTTACATTTACTTCTCACTTATGCTTATAGCAAACACCTGGTTTGGTACTGAGGTGATTCTGAAAAAAACTGCTATCAAAAAAAGCTGGGAGCTGTTTTTGTGTTTGGTAAACACTCAGCTTCAGCTTTTTTTCACAGTTTTGGATGAAAAAAAGCCAAAAACAAGAAGCTGCAAAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006282 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031935 GO:0033043 GO:0033044 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0060255 GO:0060968 GO:0065007 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902275 GO:1903506 GO:2000112 GO:2001020 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c_3

Protein Analysis

214

Amino Acids

24.37

Weight (kDa)

9.3

Isoelectric Point (pI)

48.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012671)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g11840 pycom02g19230 pycom03g18770 pycom04g15630 pycom04g19590 pycom06g01140 pycom07g19170 pycom1146g00020 pycom12g13500 pycom12g15480 pycom12g15620 pycom13g24290 pycom14g04610 pycom16g10630 pycom17g07900 pycom17g17160
rosa_samantha	Rh7AG153500 Rh7BG154700 Rh7CG158800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	439
AclWI	GGATC	2 cut(s)	382, 416
AcsI	RAATTY	1 cut(s)	219
AcuI	CTGAAG	1 cut(s)	566
AfaI	GTAC	4 cut(s)	26, 67, 280, 508
AflIII	ACRYGT	1 cut(s)	437
AgsI	TTSAA	4 cut(s)	149, 195, 224, 396
AjnI	CCWGG	1 cut(s)	497
AluBI	AGCT	7 cut(s)	137, 155, 546, 553, 580, 586, 630
AluI	AGCT	7 cut(s)	137, 155, 546, 553, 580, 586, 630
Alw26I	GTCTC	2 cut(s)	9, 326
AlwI	GGATC	2 cut(s)	382, 416
ApeKI	GCWGC	1 cut(s)	630
ApoI	RAATTY	1 cut(s)	219
AsuHPI	GGTGA	2 cut(s)	372, 526
BaeI	ACNNNNGTAYC	2 cut(s)	498, 531
BarI	GAAGNNNNNNTAC	2 cut(s)	265, 297
BbsI	GAAGAC	1 cut(s)	280
BbvI	GCAGC	1 cut(s)	617
BccI	CCATC	1 cut(s)	398
BceAI	ACGGC	1 cut(s)	58
BciT130I	CCWGG	1 cut(s)	499
BcoDI	GTCTC	2 cut(s)	9, 326
BfaI	CTAG	2 cut(s)	33, 640
BisI	GCNGC	1 cut(s)	631
BlsI	GCNGC	1 cut(s)	632
Bme1390I	CCNGG	1 cut(s)	499
BmrFI	CCNGG	1 cut(s)	499
BpiI	GAAGAC	1 cut(s)	280
BsaJI	CCNNGG	1 cut(s)	340
Bse1I	ACTGG	1 cut(s)	239
BseBI	CCWGG	1 cut(s)	499
BseDI	CCNNGG	1 cut(s)	340
BseGI	GGATG	1 cut(s)	610
BseMII	CTCAG	2 cut(s)	501, 590
BseNI	ACTGG	1 cut(s)	239
BseXI	GCAGC	1 cut(s)	617
BseYI	CCCAGC	1 cut(s)	546
Bsh1236I	CGCG	1 cut(s)	439
BslFI	GGGAC	2 cut(s)	56, 407
BsmAI	GTCTC	2 cut(s)	9, 326
BsmFI	GGGAC	2 cut(s)	56, 407
BsmI	GAATGC	1 cut(s)	58
Bsp1407I	TGTACA	1 cut(s)	65
Bsp143I	GATC	2 cut(s)	374, 408
Bsp19I	CCATGG	1 cut(s)	340
BspCNI	CTCAG	2 cut(s)	502, 589
BspFNI	CGCG	1 cut(s)	439
BspPI	GGATC	2 cut(s)	382, 416
BsrGI	TGTACA	1 cut(s)	65
BsrI	ACTGG	1 cut(s)	239
BssECI	CCNNGG	1 cut(s)	340
BssMI	GATC	2 cut(s)	374, 408
BssT1I	CCWWGG	1 cut(s)	340
Bst2UI	CCWGG	1 cut(s)	499
Bst4CI	ACNGT	3 cut(s)	187, 256, 598
BstAPI	GCANNNNNTGC	1 cut(s)	246
BstAUI	TGTACA	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	3 cut(s)	348, 510, 576
BstDSI	CCRYGG	1 cut(s)	340
BstF5I	GGATG	1 cut(s)	610
BstFNI	CGCG	1 cut(s)	439
BstKTI	GATC	2 cut(s)	377, 411
BstMAI	GTCTC	2 cut(s)	9, 326
BstMBI	GATC	2 cut(s)	374, 408
BstMWI	GCNNNNNNNGC	1 cut(s)	246
BstNI	CCWGG	1 cut(s)	499
BstSCI	CCNGG	1 cut(s)	497
BstUI	CGCG	1 cut(s)	439
BstV1I	GCAGC	1 cut(s)	617
BstV2I	GAAGAC	1 cut(s)	280
BstX2I	RGATCY	1 cut(s)	408
BstXI	CCANNNNNNTGG	1 cut(s)	257
BstYI	RGATCY	1 cut(s)	408
BtgI	CCRYGG	1 cut(s)	340
BtsCI	GGATG	1 cut(s)	610
BtsI	GCAGTG	1 cut(s)	109
BtsIMutI	CAGTG	1 cut(s)	109
Cac8I	GCNNGC	1 cut(s)	100
CsiI	ACCWGGT	1 cut(s)	497
Csp6I	GTAC	4 cut(s)	25, 66, 279, 507
CviAII	CATG	2 cut(s)	113, 341
CviQI	GTAC	4 cut(s)	25, 66, 279, 507
DdeI	CTNAG	3 cut(s)	348, 510, 576
DpnI	GATC	2 cut(s)	376, 410
DpnII	GATC	2 cut(s)	374, 408
DraI	TTTAAA	1 cut(s)	12
Eco130I	CCWWGG	1 cut(s)	340
Eco57I	CTGAAG	1 cut(s)	566
EcoRII	CCWGG	1 cut(s)	497
EcoT14I	CCWWGG	1 cut(s)	340
ErhI	CCWWGG	1 cut(s)	340
FaeI	CATG	2 cut(s)	116, 344
FaiI	YATR	8 cut(s)	88, 114, 122, 264, 342, 414, 482, 488
FaqI	GGGAC	2 cut(s)	56, 407
FatI	CATG	2 cut(s)	112, 340
Fnu4HI	GCNGC	1 cut(s)	631
FokI	GGATG	1 cut(s)	617
Fsp4HI	GCNGC	1 cut(s)	631
FspBI	CTAG	2 cut(s)	33, 640
GluI	GCNGC	1 cut(s)	631
GsaI	CCCAGC	1 cut(s)	550
Hin1II	CATG	2 cut(s)	116, 344
HinfI	GANTC	3 cut(s)	91, 420, 517
HphI	GGTGA	2 cut(s)	372, 526
Hpy166II	GTNNAC	2 cut(s)	68, 571
Hpy188I	TCNGA	2 cut(s)	333, 522
Hpy188III	TCNNGA	3 cut(s)	158, 195, 293
Hpy8I	GTNNAC	2 cut(s)	68, 571
HpyCH4III	ACNGT	3 cut(s)	187, 256, 598
HpyCH4IV	ACGT	1 cut(s)	277
HpyCH4V	TGCA	3 cut(s)	58, 240, 633
HpyF10VI	GCNNNNNNNGC	1 cut(s)	246
HpyF3I	CTNAG	3 cut(s)	348, 510, 576
HpySE526I	ACGT	1 cut(s)	277
Hsp92II	CATG	2 cut(s)	116, 344
Kzo9I	GATC	2 cut(s)	374, 408
LmnI	GCTCC	2 cut(s)	271, 550
Lsp1109I	GCAGC	1 cut(s)	617
MabI	ACCWGGT	1 cut(s)	497
MaeI	CTAG	2 cut(s)	33, 640
MaeII	ACGT	1 cut(s)	277
MaeIII	GTNAC	1 cut(s)	378
MalI	GATC	2 cut(s)	376, 410
MboI	GATC	2 cut(s)	374, 408
MboII	GAAGA	2 cut(s)	285, 413
MflI	RGATCY	1 cut(s)	408
MluCI	AATT	5 cut(s)	13, 139, 209, 219, 244
MluI	ACGCGT	1 cut(s)	437
MlyI	GAGTC	1 cut(s)	429
MnlI	CCTC	4 cut(s)	75, 302, 435, 505
MseI	TTAA	2 cut(s)	11, 216
MspR9I	CCNGG	1 cut(s)	499
Mva1269I	GAATGC	1 cut(s)	58
MvaI	CCWGG	1 cut(s)	499
MvnI	CGCG	1 cut(s)	439
MwoI	GCNNNNNNNGC	1 cut(s)	246
NcoI	CCATGG	1 cut(s)	340
NdeII	GATC	2 cut(s)	374, 408
NlaIII	CATG	2 cut(s)	116, 344
NmuCI	GTSAC	1 cut(s)	378
PctI	GAATGC	1 cut(s)	58
PfeI	GAWTC	2 cut(s)	91, 517
PkrI	GCNGC	1 cut(s)	632
PleI	GAGTC	1 cut(s)	428
PpsI	GAGTC	1 cut(s)	428
Psp6I	CCWGG	1 cut(s)	497
PspFI	CCCAGC	1 cut(s)	546
PspGI	CCWGG	1 cut(s)	497
PsuI	RGATCY	1 cut(s)	408
RsaI	GTAC	4 cut(s)	26, 67, 280, 508
RsaNI	GTAC	4 cut(s)	25, 66, 279, 507
SaqAI	TTAA	2 cut(s)	11, 216
SatI	GCNGC	1 cut(s)	631
Sau3AI	GATC	2 cut(s)	374, 408
SchI	GAGTC	1 cut(s)	429
ScrFI	CCNGG	1 cut(s)	499
SexAI	ACCWGGT	1 cut(s)	497
SmiI	ATTTAAAT	1 cut(s)	12
Sse9I	AATT	5 cut(s)	13, 139, 209, 219, 244
SspMI	CTAG	2 cut(s)	33, 640
StyD4I	CCNGG	1 cut(s)	497
StyI	CCWWGG	1 cut(s)	340
SwaI	ATTTAAAT	1 cut(s)	12
TaaI	ACNGT	3 cut(s)	187, 256, 598
TaiI	ACGT	1 cut(s)	280
TasI	AATT	5 cut(s)	13, 139, 209, 219, 244
TatI	WGTACW	1 cut(s)	65
TfiI	GAWTC	2 cut(s)	91, 517
Tru1I	TTAA	2 cut(s)	11, 216
Tru9I	TTAA	2 cut(s)	11, 216
TscAI	CASTG	1 cut(s)	109
TseFI	GTSAC	1 cut(s)	378
TseI	GCWGC	1 cut(s)	630
Tsp45I	GTSAC	1 cut(s)	378
TspDTI	ATGAA	2 cut(s)	429, 621
TspRI	CASTG	1 cut(s)	109
XapI	RAATTY	1 cut(s)	219
XspI	CTAG	2 cut(s)	33, 640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.