Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0012671

Physical Location & Seq

Genomic Coordinates Reverse (-)

17888110 .. 17888769

Gene Structure 660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g15480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGTGTCCTCCTCAGTATGCAACAACCTCTGCATATTCAGTACTCCAAAATGGTTCATCTGTTATCCCTGAATCAAATGAGTTTAAAGCATGGAAAACACATGATTATGCTTTCATGTTGCTCCTTATTGCAACACTTTATTCATCCGCAATTTCCGCTGTGATTGGCAGCAGGAGCTCTCGAGAGATGTGGGTTCCTCTCCAAAACCATTTTTTCTTAACGAGTATAAAAACCAGTATAATCAAGTTACATACTTATCTTTACAACATGAAGGCCTGGTTTGGTACTGAGGTGATTCTGAAAAAAGCTGCTATAAAAAAAAGCTGGGAGCTGTTTTTGTGTTTGGTAAACACTCAGCTTCAGCTTTTTTTCACAAAAGGATCGATCAATTTCCCAGTTTCTTCAAAGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006464 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0016567 GO:0016740 GO:0017038 GO:0019395 GO:0019538 GO:0019752 GO:0019787 GO:0019899 GO:0030258 GO:0031625 GO:0032446 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0036211 GO:0042886 GO:0043170 GO:0043412 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044389 GO:0044424 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0061630 GO:0061659 GO:0065002 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0140096 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAT VHS

Protein Analysis

138

Amino Acids

15.56

Weight (kDa)

9.55

Isoelectric Point (pI)

36.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012671)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g11840 pycom02g19230 pycom03g18770 pycom04g15630 pycom04g19590 pycom06g01140 pycom07g19170 pycom1146g00020 pycom12g13500 pycom12g15480 pycom12g15620 pycom13g24290 pycom14g04610 pycom16g10630 pycom17g07900 pycom17g17160
rosa_samantha	Rh7AG153500 Rh7BG154700 Rh7CG158800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	147, 156
AclWI	GGATC	1 cut(s)	388
AcuI	CTGAAG	1 cut(s)	344
AfaI	GTAC	2 cut(s)	42, 286
AgsI	TTSAA	1 cut(s)	405
AjnI	CCWGG	1 cut(s)	275
AluBI	AGCT	6 cut(s)	177, 308, 324, 331, 358, 364
AluI	AGCT	6 cut(s)	177, 308, 324, 331, 358, 364
Alw21I	GWGCWC	1 cut(s)	179
AlwI	GGATC	1 cut(s)	388
Ama87I	CYCGRG	1 cut(s)	180
AoxI	GGCC	1 cut(s)	273
ApeKI	GCWGC	2 cut(s)	168, 308
AsuHPI	GGTGA	1 cut(s)	304
AvaI	CYCGRG	1 cut(s)	180
BaeI	ACNNNNGTAYC	2 cut(s)	276, 309
BanII	GRGCYC	1 cut(s)	179
Bbv12I	GWGCWC	1 cut(s)	179
BbvI	GCAGC	2 cut(s)	180, 295
BciT130I	CCWGG	1 cut(s)	277
BisI	GCNGC	2 cut(s)	169, 309
BlsI	GCNGC	2 cut(s)	170, 310
BmcAI	AGTACT	1 cut(s)	42
Bme1390I	CCNGG	1 cut(s)	277
BmeT110I	CYCGRG	1 cut(s)	180
BmiI	GGNNCC	1 cut(s)	195
BmrFI	CCNGG	1 cut(s)	277
BmrI	ACTGGG	1 cut(s)	389
BmuI	ACTGGG	1 cut(s)	389
Bsa29I	ATCGAT	1 cut(s)	383
Bse1I	ACTGG	2 cut(s)	234, 395
BseBI	CCWGG	1 cut(s)	277
BseCI	ATCGAT	1 cut(s)	383
BseGI	GGATG	1 cut(s)	143
BseMII	CTCAG	3 cut(s)	26, 279, 368
BseNI	ACTGG	2 cut(s)	234, 395
BseXI	GCAGC	2 cut(s)	180, 295
BseYI	CCCAGC	1 cut(s)	324
BshFI	GGCC	1 cut(s)	275
BshVI	ATCGAT	1 cut(s)	383
BsiHKAI	GWGCWC	1 cut(s)	179
BsiHKCI	CYCGRG	1 cut(s)	180
BsnI	GGCC	1 cut(s)	275
BsoBI	CYCGRG	1 cut(s)	180
Bsp1286I	GDGCHC	1 cut(s)	179
Bsp143I	GATC	2 cut(s)	380, 384
BspACI	CCGC	2 cut(s)	147, 156
BspANI	GGCC	1 cut(s)	275
BspCNI	CTCAG	3 cut(s)	25, 280, 367
BspDI	ATCGAT	1 cut(s)	383
BspLI	GGNNCC	1 cut(s)	195
BspPI	GGATC	1 cut(s)	388
BsrI	ACTGG	2 cut(s)	234, 395
BssMI	GATC	2 cut(s)	380, 384
Bst2UI	CCWGG	1 cut(s)	277
BstDEI	CTNAG	3 cut(s)	12, 288, 354
BstF5I	GGATG	1 cut(s)	143
BstKTI	GATC	2 cut(s)	383, 387
BstMBI	GATC	2 cut(s)	380, 384
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 174
BstNI	CCWGG	1 cut(s)	277
BstSCI	CCNGG	1 cut(s)	275
BstV1I	GCAGC	2 cut(s)	180, 295
Bsu15I	ATCGAT	1 cut(s)	383
BsuRI	GGCC	1 cut(s)	275
BsuTUI	ATCGAT	1 cut(s)	383
BtsCI	GGATG	1 cut(s)	143
ClaI	ATCGAT	1 cut(s)	383
Csp6I	GTAC	2 cut(s)	41, 285
CviAII	CATG	4 cut(s)	90, 101, 115, 268
CviJI	RGCY	7 cut(s)	177, 275, 308, 324, 331, 358, 364
CviKI_1	RGCY	7 cut(s)	177, 275, 308, 324, 331, 358, 364
CviQI	GTAC	2 cut(s)	41, 285
DdeI	CTNAG	3 cut(s)	12, 288, 354
DpnI	GATC	2 cut(s)	382, 386
DpnII	GATC	2 cut(s)	380, 384
DraI	TTTAAA	1 cut(s)	85
Ecl136II	GAGCTC	1 cut(s)	177
Eco147I	AGGCCT	1 cut(s)	275
Eco24I	GRGCYC	1 cut(s)	179
Eco53kI	GAGCTC	1 cut(s)	177
Eco57I	CTGAAG	1 cut(s)	344
Eco88I	CYCGRG	1 cut(s)	180
EcoICRI	GAGCTC	1 cut(s)	177
EcoRII	CCWGG	1 cut(s)	275
EcoT38I	GRGCYC	1 cut(s)	179
FaeI	CATG	4 cut(s)	93, 104, 118, 271
FatI	CATG	4 cut(s)	89, 100, 114, 267
Fnu4HI	GCNGC	2 cut(s)	169, 309
FokI	GGATG	1 cut(s)	130
FriOI	GRGCYC	1 cut(s)	179
Fsp4HI	GCNGC	2 cut(s)	169, 309
GluI	GCNGC	2 cut(s)	169, 309
GsaI	CCCAGC	1 cut(s)	328
HaeIII	GGCC	1 cut(s)	275
Hin1II	CATG	4 cut(s)	93, 104, 118, 271
HinfI	GANTC	2 cut(s)	71, 295
HphI	GGTGA	1 cut(s)	304
Hpy166II	GTNNAC	1 cut(s)	349
Hpy188I	TCNGA	1 cut(s)	300
Hpy188III	TCNNGA	2 cut(s)	180, 182
Hpy8I	GTNNAC	1 cut(s)	349
HpyAV	CCTTC	1 cut(s)	265
HpyCH4V	TGCA	3 cut(s)	20, 32, 131
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 174
HpyF3I	CTNAG	3 cut(s)	12, 288, 354
Hsp92II	CATG	4 cut(s)	93, 104, 118, 271
Kzo9I	GATC	2 cut(s)	380, 384
LmnI	GCTCC	3 cut(s)	126, 174, 328
LpnPI	CCDG	7 cut(s)	81, 157, 247, 262, 289, 310, 408
Lsp1109I	GCAGC	2 cut(s)	180, 295
MaeIII	GTNAC	1 cut(s)	246
MalI	GATC	2 cut(s)	382, 386
MboI	GATC	2 cut(s)	380, 384
MboII	GAAGA	1 cut(s)	393
MhlI	GDGCHC	1 cut(s)	179
MluCI	AATT	2 cut(s)	150, 388
MnlI	CCTC	5 cut(s)	18, 21, 37, 207, 283
MseI	TTAA	3 cut(s)	84, 218, 412
MslI	CAYNNNNRTG	1 cut(s)	105
MspA1I	CMGCKG	1 cut(s)	158
MspR9I	CCNGG	1 cut(s)	277
MvaI	CCWGG	1 cut(s)	277
MwoI	GCNNNNNNNGC	2 cut(s)	155, 174
NdeII	GATC	2 cut(s)	380, 384
NlaIII	CATG	4 cut(s)	93, 104, 118, 271
NlaIV	GGNNCC	1 cut(s)	195
PaeR7I	CTCGAG	1 cut(s)	180
PceI	AGGCCT	1 cut(s)	275
PfeI	GAWTC	2 cut(s)	71, 295
PkrI	GCNGC	2 cut(s)	170, 310
Psp124BI	GAGCTC	1 cut(s)	179
Psp6I	CCWGG	1 cut(s)	275
PspFI	CCCAGC	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	275
PspN4I	GGNNCC	1 cut(s)	195
RsaI	GTAC	2 cut(s)	42, 286
RsaNI	GTAC	2 cut(s)	41, 285
RseI	CAYNNNNRTG	1 cut(s)	105
SacI	GAGCTC	1 cut(s)	179
SaqAI	TTAA	3 cut(s)	84, 218, 412
SatI	GCNGC	2 cut(s)	169, 309
Sau3AI	GATC	2 cut(s)	380, 384
ScaI	AGTACT	1 cut(s)	42
ScrFI	CCNGG	1 cut(s)	277
SduI	GDGCHC	1 cut(s)	179
SetI	ASST	8 cut(s)	29, 179, 294, 310, 326, 333, 360, 366
Sfr274I	CTCGAG	1 cut(s)	180
SlaI	CTCGAG	1 cut(s)	180
SmiMI	CAYNNNNRTG	1 cut(s)	105
SmlI	CTYRAG	1 cut(s)	180
SmoI	CTYRAG	1 cut(s)	180
Sse9I	AATT	2 cut(s)	150, 388
SseBI	AGGCCT	1 cut(s)	275
SsiI	CCGC	2 cut(s)	147, 156
SstI	GAGCTC	1 cut(s)	179
StuI	AGGCCT	1 cut(s)	275
StyD4I	CCNGG	1 cut(s)	275
TaqI	TCGA	2 cut(s)	181, 383
TasI	AATT	2 cut(s)	150, 388
TatI	WGTACW	1 cut(s)	40
TfiI	GAWTC	2 cut(s)	71, 295
Tru1I	TTAA	3 cut(s)	84, 218, 412
Tru9I	TTAA	3 cut(s)	84, 218, 412
TseI	GCWGC	2 cut(s)	168, 308
TspDTI	ATGAA	4 cut(s)	45, 103, 132, 284
XhoI	CTCGAG	1 cut(s)	180
ZrmI	AGTACT	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.