Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0012671

Physical Location & Seq

Genomic Coordinates Forward (+)

4295881 .. 4297775

Gene Structure 1895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g04610.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGATTCCTGCCGCATCCGGTTCGTCCATAGGGCCCAGCCGCCCCCCGTACGCCACCGTAGTACTGCCTTCACCGCCAGAAACCGACTCTCCGACTTTCTCGGACTACCCTCGAGGACATAATTTTTTTATAATTCTAAATTATATGGTTGTCAATTGTCACTTTTTTAATTTACGTTTAAATTTTCATTTTTCTTTTCATCCGGTTAATTATCCGAGCACAACCCAAATTTTTACAACTTGTGGGATTAAATGGGTTGTGATTATTTTCTCATATTGGGTTGATTTTGTTACAGTGGCTGTGTCTGAACCGGCCGTGGTGGCCTCGGCTGAGGAGGCAGATGATACAGCGGCGCCGCTATCATCTCCGAACAGCACGGTTTCATCGTTTCAGATGGATTTTGGAATGAGAAGTGGAGGAAGATCGAGTAAAAGAGATTTGGAGGTTGATGCCGACAGAGCGAGTGATGACGAGGAGAACGGGTCGACTCGGAAGAAACTCAGGCGCTCTAAAGATCAATCGGCTTTTCTTGAGGAGAGCTTCAAAGAGCACAGCACTCTGAATCCTGTAAGTCAAGGGAACAAAGAATACTTAAGTTTTTTGTTTAGAACTTCAGAGAATTGCGAGTACTTAAAGAGATGCTGTGAAACACTGACAGAAGAGAATAGGAGGTTACGAAAAGAACTGCAAGAATTAAAAACTTTGAAGACCTCTCAGCCTTTCTACGTGCAGGCTGCAGCTGCCTGCCACCACACTCACCATGTGCCCCTCATGTGGGCGCGTGGTCACAACTGCCTCAGCCAACACCTCCACCACCACCAACAACAACCACATGAAGAACTGATTTGCTTTAACTTTTTTTCACAGTTTTGGGTGAAAAAAGCCAAAAACAAGAAGCTGCACAACCCAGCTTTGAAAAATCGGTTTTTTTTCATATCTGTTTTACATAAAAGTTTACCAAACACTATAATACTTTTTTTTTTTTTTCAAAAGAACTTTTACAAAAAAGTTTACCAAACACTCTGCTGCTTTATTTCACAGCCGTTTATTCTCATAGCACAGCAGAATCAGTTTTTTTTTAAAGCACAAAAATACCAAACCAGCTCAAAGACTGCTCCGAAAAAGCAGCCAAGGTTAAATCCATTTGCTGCTCAGGCCCACATGCAGCAGCATCAAGGTGCAGCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ HD-ZIP_N Homeobox

Protein Analysis

397

Amino Acids

45.51

Weight (kDa)

9.19

Isoelectric Point (pI)

51.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012671)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g11840 pycom02g19230 pycom03g18770 pycom04g15630 pycom04g19590 pycom06g01140 pycom07g19170 pycom1146g00020 pycom12g13500 pycom12g15480 pycom12g15620 pycom13g24290 pycom14g04610 pycom16g10630 pycom17g07900 pycom17g17160
rosa_samantha	Rh7AG153500 Rh7BG154700 Rh7CG158800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	131
AbsI	CCTCGAGG	1 cut(s)	111
AccB1I	GGYRCC	1 cut(s)	352
AccI	GTMKAC	1 cut(s)	485
AccII	CGCG	1 cut(s)	781
AciI	CCGC	5 cut(s)	12, 40, 74, 350, 356
AcoI	YGGCCR	1 cut(s)	312
AcsI	RAATTY	2 cut(s)	181, 228
AcuI	CTGAAG	1 cut(s)	597
AcyI	GRCGYC	1 cut(s)	353
AdeI	CACNNNGTG	1 cut(s)	763
AfaI	GTAC	3 cut(s)	50, 63, 629
AfiI	CCNNNNNNNGG	2 cut(s)	774, 775
AflII	CTTAAG	1 cut(s)	592
AgsI	TTSAA	4 cut(s)	544, 706, 916, 989
AluBI	AGCT	6 cut(s)	540, 740, 898, 911, 1104, 1184
AluI	AGCT	6 cut(s)	540, 740, 898, 911, 1104, 1184
Alw21I	GWGCWC	2 cut(s)	221, 552
AlwNI	CAGNNNCTG	1 cut(s)	299
Ama87I	CYCGRG	1 cut(s)	111
AoxI	GGCC	4 cut(s)	32, 312, 321, 1155
ApaI	GGGCCC	1 cut(s)	36
ApoI	RAATTY	2 cut(s)	181, 228
AspLEI	GCGC	3 cut(s)	355, 507, 781
AspS9I	GGNCC	3 cut(s)	32, 33, 1156
AsuHPI	GGTGA	3 cut(s)	63, 749, 886
AvaI	CYCGRG	1 cut(s)	111
BaeGI	GKGCMC	2 cut(s)	36, 768
BanI	GGYRCC	1 cut(s)	352
BanII	GRGCYC	1 cut(s)	36
BbsI	GAAGAC	1 cut(s)	713
Bbv12I	GWGCWC	2 cut(s)	221, 552
BbvCI	CCTCAGC	2 cut(s)	330, 797
BccI	CCATC	1 cut(s)	388
BceAI	ACGGC	2 cut(s)	299, 1027
BcgI	CGANNNNNNTGC	1 cut(s)	37
BfmI	CTRYAG	1 cut(s)	735
BfoI	RGCGCY	2 cut(s)	356, 508
BfrI	CTTAAG	1 cut(s)	592
BglI	GCCNNNNNGGC	1 cut(s)	320
BmcAI	AGTACT	2 cut(s)	63, 629
BmeT110I	CYCGRG	1 cut(s)	111
BmgT120I	GGNCC	3 cut(s)	32, 33, 1156
BmiI	GGNNCC	2 cut(s)	34, 354
BmsI	GCATC	4 cut(s)	23, 439, 629, 1180
BpiI	GAAGAC	1 cut(s)	713
Bpu10I	CCTNAGC	3 cut(s)	330, 797, 1152
BpuEI	CTTGAG	1 cut(s)	551
BsaAI	YACGTR	1 cut(s)	727
BsaHI	GRCGYC	1 cut(s)	353
BsaJI	CCNNGG	3 cut(s)	315, 324, 1130
BsaWI	WCCGGW	2 cut(s)	17, 202
BsaXI	ACNNNNNCTCC	4 cut(s)	73, 103, 467, 497
Bsc4I	CCNNNNNNNGG	2 cut(s)	774, 775
Bse118I	RCCGGY	1 cut(s)	310
BseDI	CCNNGG	3 cut(s)	315, 324, 1130
BseGI	GGATG	2 cut(s)	14, 199
BseLI	CCNNNNNNNGG	2 cut(s)	774, 775
BseMII	CTCAG	5 cut(s)	321, 514, 728, 811, 1166
BseRI	GAGGAG	3 cut(s)	347, 488, 548
BseSI	GKGCMC	2 cut(s)	36, 768
BseX3I	CGGCCG	1 cut(s)	312
BseYI	CCCAGC	2 cut(s)	35, 907
BsgI	GTGCAG	2 cut(s)	749, 884
Bsh1236I	CGCG	1 cut(s)	781
Bsh1285I	CGRYCG	1 cut(s)	315
BshFI	GGCC	4 cut(s)	34, 314, 323, 1157
BshNI	GGYRCC	1 cut(s)	352
BsiEI	CGRYCG	1 cut(s)	315
BsiHKAI	GWGCWC	2 cut(s)	221, 552
BsiHKCI	CYCGRG	1 cut(s)	111
BsiSI	CCGG	3 cut(s)	18, 203, 311
BsiWI	CGTACG	1 cut(s)	48
BslI	CCNNNNNNNGG	2 cut(s)	774, 775
BsnI	GGCC	4 cut(s)	34, 314, 323, 1157
BsoBI	CYCGRG	1 cut(s)	111
Bsp120I	GGGCCC	1 cut(s)	32
Bsp1286I	GDGCHC	4 cut(s)	36, 221, 552, 768
Bsp143I	GATC	2 cut(s)	422, 514
BspACI	CCGC	5 cut(s)	12, 40, 74, 350, 356
BspANI	GGCC	4 cut(s)	34, 314, 323, 1157
BspCNI	CTCAG	5 cut(s)	322, 513, 727, 810, 1165
BspFNI	CGCG	1 cut(s)	781
BspLI	GGNNCC	2 cut(s)	34, 354
BspMAI	CTGCAG	1 cut(s)	739
BspT107I	GGYRCC	1 cut(s)	352
BspTI	CTTAAG	1 cut(s)	592
BsrFI	RCCGGY	1 cut(s)	310
BssAI	RCCGGY	1 cut(s)	310
BssECI	CCNNGG	3 cut(s)	315, 324, 1130
BssMI	GATC	2 cut(s)	422, 514
BssNI	GRCGYC	1 cut(s)	353
BssT1I	CCWWGG	1 cut(s)	1130
Bst4CI	ACNGT	4 cut(s)	58, 295, 379, 867
Bst6I	CTCTTC	1 cut(s)	654
BstACI	GRCGYC	1 cut(s)	353
BstAFI	CTTAAG	1 cut(s)	592
BstBAI	YACGTR	1 cut(s)	727
BstC8I	GCNNGC	2 cut(s)	732, 745
BstDEI	CTNAG	5 cut(s)	330, 500, 714, 797, 1152
BstDSI	CCRYGG	1 cut(s)	315
BstF5I	GGATG	2 cut(s)	14, 199
BstFNI	CGCG	1 cut(s)	781
BstH2I	RGCGCY	2 cut(s)	356, 508
BstHHI	GCGC	3 cut(s)	355, 507, 781
BstKTI	GATC	2 cut(s)	425, 517
BstMBI	GATC	2 cut(s)	422, 514
BstMCI	CGRYCG	1 cut(s)	315
BstMWI	GCNNNNNNNGC	6 cut(s)	73, 320, 335, 458, 740, 1154
BstNSI	RCATGY	1 cut(s)	1165
BstSFI	CTRYAG	1 cut(s)	735
BstSLI	GKGCMC	2 cut(s)	36, 768
BstUI	CGCG	1 cut(s)	781
BstV2I	GAAGAC	1 cut(s)	713
BstZI	CGGCCG	1 cut(s)	312
BsuRI	GGCC	4 cut(s)	34, 314, 323, 1157
BtgI	CCRYGG	1 cut(s)	315
BtsCI	GGATG	2 cut(s)	14, 199
BtsIMutI	CAGTG	2 cut(s)	300, 650
Cac8I	GCNNGC	2 cut(s)	732, 745
CaiI	CAGNNNCTG	1 cut(s)	299
CfoI	GCGC	3 cut(s)	355, 507, 781
Cfr10I	RCCGGY	1 cut(s)	310
Cfr13I	GGNCC	3 cut(s)	32, 33, 1156
Csp6I	GTAC	3 cut(s)	49, 62, 628
CviAII	CATG	5 cut(s)	761, 772, 833, 1162, 1188
CviQI	GTAC	3 cut(s)	49, 62, 628
DdeI	CTNAG	5 cut(s)	330, 500, 714, 797, 1152
DinI	GGCGCC	1 cut(s)	354
DpnI	GATC	2 cut(s)	424, 516
DpnII	GATC	2 cut(s)	422, 514
DraI	TTTAAA	2 cut(s)	180, 1081
DraIII	CACNNNGTG	1 cut(s)	763
EaeI	YGGCCR	1 cut(s)	312
EagI	CGGCCG	1 cut(s)	312
Eam1104I	CTCTTC	1 cut(s)	654
EarI	CTCTTC	1 cut(s)	654
EclXI	CGGCCG	1 cut(s)	312
Eco130I	CCWWGG	1 cut(s)	1130
Eco24I	GRGCYC	1 cut(s)	36
Eco52I	CGGCCG	1 cut(s)	312
Eco57I	CTGAAG	1 cut(s)	597
Eco88I	CYCGRG	1 cut(s)	111
EcoO109I	RGGNCCY	1 cut(s)	32
EcoT14I	CCWWGG	1 cut(s)	1130
EcoT38I	GRGCYC	1 cut(s)	36
EgeI	GGCGCC	1 cut(s)	354
EheI	GGCGCC	1 cut(s)	354
ErhI	CCWWGG	1 cut(s)	1130
FaeI	CATG	5 cut(s)	764, 775, 836, 1165, 1191
FatI	CATG	5 cut(s)	760, 771, 832, 1161, 1187
FblI	GTMKAC	1 cut(s)	485
FokI	GGATG	1 cut(s)	186
FriOI	GRGCYC	1 cut(s)	36
GlaI	GCGC	3 cut(s)	354, 506, 780
GsaI	CCCAGC	2 cut(s)	39, 911
HaeII	RGCGCY	2 cut(s)	356, 508
HaeIII	GGCC	4 cut(s)	34, 314, 323, 1157
HapII	CCGG	3 cut(s)	18, 203, 311
HhaI	GCGC	3 cut(s)	355, 507, 781
Hin1I	GRCGYC	1 cut(s)	353
Hin1II	CATG	5 cut(s)	764, 775, 836, 1165, 1191
Hin6I	GCGC	3 cut(s)	353, 505, 779
HinP1I	GCGC	3 cut(s)	353, 505, 779
HincII	GTYRAC	1 cut(s)	486
HindII	GTYRAC	1 cut(s)	486
HinfI	GANTC	5 cut(s)	4, 86, 487, 562, 1066
HpaII	CCGG	3 cut(s)	18, 203, 311
HphI	GGTGA	3 cut(s)	63, 749, 886
Hpy166II	GTNNAC	3 cut(s)	486, 956, 1012
Hpy188III	TCNNGA	1 cut(s)	530
Hpy8I	GTNNAC	3 cut(s)	486, 956, 1012
HpyAV	CCTTC	1 cut(s)	78
HpyCH4III	ACNGT	4 cut(s)	58, 295, 379, 867
HpyCH4IV	ACGT	2 cut(s)	175, 726
HpyCH4V	TGCA	7 cut(s)	688, 730, 737, 901, 1165, 1181, 1187
HpyF10VI	GCNNNNNNNGC	6 cut(s)	73, 320, 335, 458, 740, 1154
HpyF3I	CTNAG	5 cut(s)	330, 500, 714, 797, 1152
HpySE526I	ACGT	2 cut(s)	175, 726
Hsp92I	GRCGYC	1 cut(s)	353
Hsp92II	CATG	5 cut(s)	764, 775, 836, 1165, 1191
HspAI	GCGC	3 cut(s)	353, 505, 779
KasI	GGCGCC	1 cut(s)	352
Kzo9I	GATC	2 cut(s)	422, 514
LmnI	GCTCC	1 cut(s)	1120
LweI	GCATC	4 cut(s)	23, 439, 629, 1180
MaeII	ACGT	2 cut(s)	175, 726
MaeIII	GTNAC	4 cut(s)	158, 289, 672, 785
MalI	GATC	2 cut(s)	424, 516
MboI	GATC	2 cut(s)	422, 514
MboII	GAAGA	5 cut(s)	432, 505, 671, 718, 848
MfeI	CAATTG	1 cut(s)	154
MhlI	GDGCHC	4 cut(s)	36, 221, 552, 768
Mly113I	GGCGCC	1 cut(s)	353
MlyI	GAGTC	2 cut(s)	80, 481
MmeI	TCCRAC	1 cut(s)	116
MslI	CAYNNNNRTG	1 cut(s)	1176
MspA1I	CMGCKG	3 cut(s)	350, 740, 1184
MspCI	CTTAAG	1 cut(s)	592
MspI	CCGG	3 cut(s)	18, 203, 311
MunI	CAATTG	1 cut(s)	154
MvnI	CGCG	1 cut(s)	781
MwoI	GCNNNNNNNGC	6 cut(s)	73, 320, 335, 458, 740, 1154
NarI	GGCGCC	1 cut(s)	353
NdeII	GATC	2 cut(s)	422, 514
NlaIII	CATG	5 cut(s)	764, 775, 836, 1165, 1191
NlaIV	GGNNCC	2 cut(s)	34, 354
NmeAIII	GCCGAG	1 cut(s)	305
NmuCI	GTSAC	2 cut(s)	158, 785
NspI	RCATGY	1 cut(s)	1165
PaeR7I	CTCGAG	1 cut(s)	111
PcsI	WCGNNNNNNNCGW	1 cut(s)	383
PfeI	GAWTC	3 cut(s)	4, 562, 1066
Pfl23II	CGTACG	1 cut(s)	48
PleI	GAGTC	2 cut(s)	80, 481
PluTI	GGCGCC	1 cut(s)	356
PpsI	GAGTC	2 cut(s)	80, 481
Ppu21I	YACGTR	1 cut(s)	727
PsiI	TTATAA	1 cut(s)	131
PspFI	CCCAGC	2 cut(s)	35, 907
PspLI	CGTACG	1 cut(s)	48
PspN4I	GGNNCC	2 cut(s)	34, 354
PspOMI	GGGCCC	1 cut(s)	32
PspPI	GGNCC	3 cut(s)	32, 33, 1156
PspXI	VCTCGAGB	1 cut(s)	111
PsrI	GAACNNNNNNTAC	2 cut(s)	572, 604
PstI	CTGCAG	1 cut(s)	739
PstNI	CAGNNNCTG	1 cut(s)	299
PvuII	CAGCTG	2 cut(s)	740, 1184
RsaI	GTAC	3 cut(s)	50, 63, 629
RsaNI	GTAC	3 cut(s)	49, 62, 628
RseI	CAYNNNNRTG	1 cut(s)	1176
SalI	GTCGAC	1 cut(s)	484
Sau3AI	GATC	2 cut(s)	422, 514
Sau96I	GGNCC	3 cut(s)	32, 33, 1156
ScaI	AGTACT	2 cut(s)	63, 629
SchI	GAGTC	2 cut(s)	80, 481
SduI	GDGCHC	4 cut(s)	36, 221, 552, 768
SfaNI	GCATC	4 cut(s)	23, 439, 629, 1180
SfcI	CTRYAG	1 cut(s)	735
SfiI	GGCCNNNNNGGCC	1 cut(s)	320
SfoI	GGCGCC	1 cut(s)	354
Sfr274I	CTCGAG	1 cut(s)	111
SlaI	CTCGAG	1 cut(s)	111
SmiMI	CAYNNNNRTG	1 cut(s)	1176
SmlI	CTYRAG	3 cut(s)	111, 530, 592
SmoI	CTYRAG	3 cut(s)	111, 530, 592
SsiI	CCGC	5 cut(s)	12, 40, 74, 350, 356
SspDI	GGCGCC	1 cut(s)	352
StyI	CCWWGG	1 cut(s)	1130
TaaI	ACNGT	4 cut(s)	58, 295, 379, 867
TaiI	ACGT	2 cut(s)	178, 729
TaqI	TCGA	3 cut(s)	112, 425, 485
TatI	WGTACW	2 cut(s)	61, 627
TauI	GCSGC	4 cut(s)	14, 42, 353, 358
TfiI	GAWTC	3 cut(s)	4, 562, 1066
TscAI	CASTG	2 cut(s)	300, 657
TseFI	GTSAC	2 cut(s)	158, 785
Tsp45I	GTSAC	2 cut(s)	158, 785
TspDTI	ATGAA	5 cut(s)	176, 188, 372, 849, 922
TspRI	CASTG	2 cut(s)	300, 657
Vha464I	CTTAAG	1 cut(s)	592
XapI	RAATTY	2 cut(s)	181, 228
XceI	RCATGY	1 cut(s)	1165
XhoI	CTCGAG	1 cut(s)	111
XmiI	GTMKAC	1 cut(s)	485
ZrmI	AGTACT	2 cut(s)	63, 629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.