pycom13g24290

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0012671
Physical Location & Seq
Forward (+)
21484195 .. 21485824
1630 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g24290.2

Sequence Viewer

Length: 1245 bp
ATGATGCCCTTCCATCCCTTCCACAGCTCCACCCCTCCACCCCTCACCCACCTACACCCTTCCCCTTCCCTAATACCCACCCCTACCACCAAGCCTTTACTCCTTCCCCAAAAACCCTACCACCAAGTGATTCTGAAAAAAAGCTGGTATCAAAAAAACTTTTTTTCACAGTTTTGGGTGAAAAAAAGCCAAAAACAAGAAGCTGCAAAACCCAACTTTGAAAAACTGGCTTTTTTCACATCTGTTTTACATAAAAGTTTACCAAACACTATAATAATGTTTTTTTTTTTCAAAAACACTTTTACAAAAAAGTTTACCAAACACTCTGCTGCTTTATTTCACAGCTGTTTATTCTCACAACACAGCAGAAGCAGTTTTTTTTTTTCAAAGCACATTTGTTTTTTCACATTGAATTCACCAAACCCTTTTTTTGTCCTGAAGATCTGCAATTCAAGGCACAAGCTTTTCTCTGTTGGCTCTCTTTCTCTTACTCTGTCTATGTGGAGAGGAACAAGACCAAAGACATGGAGGTGGGGCAGATGCAGAGACAGTGGGTTGACGACACAAATCCTTGTTCCTGGAGGTAAAAGCAACAGAAAAAATTTTGTTGTTTTTGCTTGTTTGGTTCCTGATGTTTTTGTTTTTTGGGATTTTTTTTATTGGTTGGGTGAGAGAATGGGTTTCTGGATGGTCAATTTTTGCAGCTCCAACAGCTGCAAGATGAGAGCAACCCATATTTTGTTGTTGAAGTGGTGTCTCTTTTCTTTGAAGATTCTAACTAGGATCTTTCTTTTCACTATCTTTTTGTATCTGAGATTGGATTGGACTGGCTGGATTGATTTGTATGGTGCTCATGGTTTGCTACGGATACTTTTAAGGAGTACTTCAAAAGGGTTGATGCCCATGTTCACCAGTTCAAGGGTAGTAGCTCCAGGTACACTTAAATGTTGCTTCTTTTTGGGTTTTGGGGGAAGGGAAGGGGCTATGTTTTTGGGGAAGGAGAAAAGGCTTGGTGGTAGGGGTGGGTATTACGGAAGGGGAAGGGTGTCCATGGGTGAGGGGTGGAGAGGATGGAGGGGTGTCAGGTGGGGAAGAGGAAGGGGGTTCTGTGTTTTTATTTTTATATTTTTTTATTACTTTTATTTAATTAATTATTTTAATATTTTAAATTTGGCGCCACATCACCAGTTAATGGGGAGACTTAATAGCCAGACTAACAGATGTATGAGACAATCTCAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

415

Amino Acids

48.42

Weight (kDa)

10.6

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1174
AccB7I CCANNNNNTGG 1 cut(s) 1192
AclWI GGATC 1 cut(s) 791
AcsI RAATTY 3 cut(s) 412, 601, 1168
AcuI CTGAAG 1 cut(s) 458
AcyI GRCGYC 1 cut(s) 1175
AdeI CACNNNGTG 1 cut(s) 127
AfaI GTAC 2 cut(s) 883, 937
AfiI CCNNNNNNNGG 2 cut(s) 918, 1192
AgsI TTSAA 9 cut(s) 221, 292, 387, 412, 453, 748, 769, 888, 918
AjnI CCWGG 2 cut(s) 577, 931
AluBI AGCT 8 cut(s) 27, 144, 203, 345, 463, 705, 714, 929
AluI AGCT 8 cut(s) 27, 144, 203, 345, 463, 705, 714, 929
Alw21I GWGCWC 1 cut(s) 853
Alw26I GTCTC 4 cut(s) 540, 761, 1192, 1222
AlwI GGATC 1 cut(s) 791
ApeKI GCWGC 4 cut(s) 203, 329, 702, 714
ApoI RAATTY 3 cut(s) 412, 601, 1168
AseI ATTAAT 1 cut(s) 1149
AspLEI GCGC 1 cut(s) 1177
AsuHPI GGTGA 7 cut(s) 37, 190, 408, 680, 901, 1067, 1175
BanI GGYRCC 1 cut(s) 1174
Bbv12I GWGCWC 1 cut(s) 853
BbvI GCAGC 4 cut(s) 190, 316, 701, 714
BccI CCATC 3 cut(s) 21, 682, 1065
BciT130I CCWGG 2 cut(s) 579, 933
BciVI GTATCC 1 cut(s) 861
BcoDI GTCTC 4 cut(s) 540, 761, 1192, 1222
BfaI CTAG 1 cut(s) 780
BfoI RGCGCY 1 cut(s) 1178
BfuI GTATCC 1 cut(s) 861
BglII AGATCT 1 cut(s) 441
BisI GCNGC 4 cut(s) 204, 330, 703, 715
BlsI GCNGC 4 cut(s) 205, 331, 704, 716
BmcAI AGTACT 1 cut(s) 883
Bme1390I CCNGG 2 cut(s) 579, 933
BmiI GGNNCC 2 cut(s) 627, 1176
BmrFI CCNGG 2 cut(s) 579, 933
BmsI GCATC 2 cut(s) 530, 888
BplI GAGNNNNNCTC 1 cut(s) 1219
BpmI CTGGAG 2 cut(s) 600, 915
BsaHI GRCGYC 1 cut(s) 1175
BsaJI CCNNGG 1 cut(s) 1050
Bsc4I CCNNNNNNNGG 2 cut(s) 918, 1192
Bse1I ACTGG 4 cut(s) 231, 832, 912, 1186
BseBI CCWGG 2 cut(s) 579, 933
BseDI CCNNGG 1 cut(s) 1050
BseGI GGATG 3 cut(s) 13, 693, 1076
BseLI CCNNNNNNNGG 2 cut(s) 918, 1192
BseMII CTCAG 1 cut(s) 803
BseNI ACTGG 4 cut(s) 231, 832, 912, 1186
BseXI GCAGC 4 cut(s) 190, 316, 701, 714
BshNI GGYRCC 1 cut(s) 1174
BsiHKAI GWGCWC 1 cut(s) 853
BslI CCNNNNNNNGG 2 cut(s) 918, 1192
BsmAI GTCTC 4 cut(s) 540, 761, 1192, 1222
Bsp1286I GDGCHC 1 cut(s) 853
Bsp143I GATC 2 cut(s) 441, 783
Bsp19I CCATGG 1 cut(s) 1050
BspCNI CTCAG 1 cut(s) 804
BspLI GGNNCC 2 cut(s) 627, 1176
BspPI GGATC 1 cut(s) 791
BspT107I GGYRCC 1 cut(s) 1174
BsrI ACTGG 4 cut(s) 231, 832, 912, 1186
BssECI CCNNGG 1 cut(s) 1050
BssMI GATC 2 cut(s) 441, 783
BssNI GRCGYC 1 cut(s) 1175
BssT1I CCWWGG 1 cut(s) 1050
Bst2UI CCWGG 2 cut(s) 579, 933
Bst4CI ACNGT 2 cut(s) 171, 551
Bst6I CTCTTC 1 cut(s) 1087
BstACI GRCGYC 1 cut(s) 1175
BstDEI CTNAG 1 cut(s) 812
BstDSI CCRYGG 1 cut(s) 1050
BstF5I GGATG 3 cut(s) 13, 693, 1076
BstH2I RGCGCY 1 cut(s) 1178
BstHHI GCGC 1 cut(s) 1177
BstKTI GATC 2 cut(s) 444, 786
BstMAI GTCTC 4 cut(s) 540, 761, 1192, 1222
BstMBI GATC 2 cut(s) 441, 783
BstMWI GCNNNNNNNGC 1 cut(s) 711
BstNI CCWGG 2 cut(s) 579, 933
BstSCI CCNGG 2 cut(s) 577, 931
BstV1I GCAGC 4 cut(s) 190, 316, 701, 714
BstX2I RGATCY 2 cut(s) 441, 783
BstXI CCANNNNNNTGG 1 cut(s) 525
BstYI RGATCY 2 cut(s) 441, 783
BsuI GTATCC 1 cut(s) 861
BtgI CCRYGG 1 cut(s) 1050
BtsCI GGATG 3 cut(s) 13, 693, 1076
BtsIMutI CAGTG 1 cut(s) 556
CfoI GCGC 1 cut(s) 1177
Csp6I GTAC 2 cut(s) 882, 936
CviAII CATG 4 cut(s) 525, 854, 904, 1051
CviQI GTAC 2 cut(s) 882, 936
DdeI CTNAG 1 cut(s) 812
DinI GGCGCC 1 cut(s) 1176
DpnI GATC 2 cut(s) 443, 785
DpnII GATC 2 cut(s) 441, 783
DraI TTTAAA 1 cut(s) 1167
DraIII CACNNNGTG 1 cut(s) 127
Eam1104I CTCTTC 1 cut(s) 1087
EarI CTCTTC 1 cut(s) 1087
Eco130I CCWWGG 1 cut(s) 1050
Eco57I CTGAAG 1 cut(s) 458
EcoRI GAATTC 1 cut(s) 412
EcoRII CCWGG 2 cut(s) 577, 931
EcoT14I CCWWGG 1 cut(s) 1050
EgeI GGCGCC 1 cut(s) 1176
EheI GGCGCC 1 cut(s) 1176
ErhI CCWWGG 1 cut(s) 1050
FaeI CATG 4 cut(s) 528, 857, 907, 1054
FalI AAGNNNNNCTT 2 cut(s) 868, 900
FatI CATG 4 cut(s) 524, 853, 903, 1050
Fnu4HI GCNGC 4 cut(s) 204, 330, 703, 715
FokI GGATG 2 cut(s) 700, 1083
Fsp4HI GCNGC 4 cut(s) 204, 330, 703, 715
FspBI CTAG 1 cut(s) 780
GlaI GCGC 1 cut(s) 1176
GluI GCNGC 4 cut(s) 204, 330, 703, 715
GsuI CTGGAG 2 cut(s) 600, 915
HaeII RGCGCY 1 cut(s) 1178
HhaI GCGC 1 cut(s) 1177
Hin1I GRCGYC 1 cut(s) 1175
Hin1II CATG 4 cut(s) 528, 857, 907, 1054
Hin6I GCGC 1 cut(s) 1175
HinP1I GCGC 1 cut(s) 1175
HincII GTYRAC 1 cut(s) 558
HindII GTYRAC 1 cut(s) 558
HindIII AAGCTT 1 cut(s) 461
HinfI GANTC 2 cut(s) 130, 772
HphI GGTGA 7 cut(s) 37, 190, 408, 680, 901, 1067, 1175
Hpy166II GTNNAC 5 cut(s) 260, 315, 558, 909, 938
Hpy188I TCNGA 2 cut(s) 135, 813
Hpy188III TCNNGA 3 cut(s) 436, 629, 685
Hpy8I GTNNAC 5 cut(s) 260, 315, 558, 909, 938
HpyCH4III ACNGT 2 cut(s) 171, 551
HpyCH4V TGCA 5 cut(s) 206, 447, 543, 702, 717
HpyF10VI GCNNNNNNNGC 1 cut(s) 711
HpyF3I CTNAG 1 cut(s) 812
Hsp92I GRCGYC 1 cut(s) 1175
Hsp92II CATG 4 cut(s) 528, 857, 907, 1054
HspAI GCGC 1 cut(s) 1175
KasI GGCGCC 1 cut(s) 1174
Kzo9I GATC 2 cut(s) 441, 783
LmnI GCTCC 3 cut(s) 32, 710, 934
Lsp1109I GCAGC 4 cut(s) 190, 316, 701, 714
LweI GCATC 2 cut(s) 530, 888
MaeI CTAG 1 cut(s) 780
MalI GATC 2 cut(s) 443, 785
MboI GATC 2 cut(s) 441, 783
MboII GAAGA 3 cut(s) 451, 781, 1104
MflI RGATCY 2 cut(s) 441, 783
MhlI GDGCHC 1 cut(s) 853
MluCI AATT 8 cut(s) 412, 448, 601, 694, 1146, 1150, 1168, 1240
Mly113I GGCGCC 1 cut(s) 1175
MmeI TCCRAC 1 cut(s) 732
MnlI CCTC 9 cut(s) 45, 53, 500, 522, 575, 1051, 1061, 1068, 1088
MseI TTAA 9 cut(s) 875, 942, 1145, 1149, 1158, 1166, 1190, 1203, 1243
MslI CAYNNNNRTG 2 cut(s) 529, 943
MspA1I CMGCKG 2 cut(s) 345, 714
MspR9I CCNGG 2 cut(s) 579, 933
MvaI CCWGG 2 cut(s) 579, 933
MwoI GCNNNNNNNGC 1 cut(s) 711
NarI GGCGCC 1 cut(s) 1175
NcoI CCATGG 1 cut(s) 1050
NdeII GATC 2 cut(s) 441, 783
NlaIII CATG 4 cut(s) 528, 857, 907, 1054
NlaIV GGNNCC 2 cut(s) 627, 1176
PacI TTAATTAA 1 cut(s) 1149
PfeI GAWTC 2 cut(s) 130, 772
PflMI CCANNNNNTGG 1 cut(s) 1192
PfoI TCCNGGA 1 cut(s) 577
PkrI GCNGC 4 cut(s) 205, 331, 704, 716
PluTI GGCGCC 1 cut(s) 1178
PshBI ATTAAT 1 cut(s) 1149
Psp6I CCWGG 2 cut(s) 577, 931
PspGI CCWGG 2 cut(s) 577, 931
PspN4I GGNNCC 2 cut(s) 627, 1176
PsuI RGATCY 2 cut(s) 441, 783
PvuII CAGCTG 2 cut(s) 345, 714
RsaI GTAC 2 cut(s) 883, 937
RsaNI GTAC 2 cut(s) 882, 936
RseI CAYNNNNRTG 2 cut(s) 529, 943
SaqAI TTAA 9 cut(s) 875, 942, 1145, 1149, 1158, 1166, 1190, 1203, 1243
SatI GCNGC 4 cut(s) 204, 330, 703, 715
Sau3AI GATC 2 cut(s) 441, 783
ScaI AGTACT 1 cut(s) 883
ScrFI CCNGG 2 cut(s) 579, 933
SduI GDGCHC 1 cut(s) 853
SfaNI GCATC 2 cut(s) 530, 888
SfoI GGCGCC 1 cut(s) 1176
SmiMI CAYNNNNRTG 2 cut(s) 529, 943
Sse9I AATT 8 cut(s) 412, 448, 601, 694, 1146, 1150, 1168, 1240
SspDI GGCGCC 1 cut(s) 1174
SspI AATATT 1 cut(s) 1162
SspMI CTAG 1 cut(s) 780
StyD4I CCNGG 2 cut(s) 577, 931
StyI CCWWGG 1 cut(s) 1050
TaaI ACNGT 2 cut(s) 171, 551
TasI AATT 8 cut(s) 412, 448, 601, 694, 1146, 1150, 1168, 1240
TatI WGTACW 1 cut(s) 881
TfiI GAWTC 2 cut(s) 130, 772
Tru1I TTAA 9 cut(s) 875, 942, 1145, 1149, 1158, 1166, 1190, 1203, 1243
Tru9I TTAA 9 cut(s) 875, 942, 1145, 1149, 1158, 1166, 1190, 1203, 1243
TscAI CASTG 1 cut(s) 556
TseI GCWGC 4 cut(s) 203, 329, 702, 714
TspGWI ACGGA 2 cut(s) 880, 1047
TspRI CASTG 1 cut(s) 556
Van91I CCANNNNNTGG 1 cut(s) 1192
VspI ATTAAT 1 cut(s) 1149
XapI RAATTY 3 cut(s) 412, 601, 1168
XspI CTAG 1 cut(s) 780
ZrmI AGTACT 1 cut(s) 883
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.