Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0010091

Physical Location & Seq

Genomic Coordinates Forward (+)

3030468 .. 3038338

Gene Structure 7871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2253 bp

ATGGCGATGCGCGACCTCGTTACCGGCGGAGCAGCTTGTGCGGTTCCAGGCCAATCTTCTTCCTCCAATCCTTTCGGCGCCCTCGCCAACGCCCTCATCGGCTCCTCCTCCAAGCAGCAGGAGAGGTTGAAGGAGATACCTTCGTCGACGCCGACTGCTTCTGAGCCGCAGTTTTATCCCGACGGCCATGGACACCTGCAACAGCTCCCCGGCTCCGAGTTTGATCAGCCGTTTATGCAGCCCGGCACTCAGAGCTCGGACTTTCTTCGGAACTTCAACTCCGTTGATGGCAACAGACTGCTTGACAATGCGTGGGACGAGATACAGAGTTCTCAGCCCGGGCCTATGCATATGCCTCAACACGACCGCATTTATGATATGGGAGCTTCTCCTCAGCTTCAACCGACTTTGGATGGGCCACCACAAAGGGTGTTGTCAAGCTTTTTGCACTCATTTGTTGAAAGTAGTCGTGGTGGAATGCCGTTTCGTCCTGCTCCACTTCCAGTGTTAGGATTGTCTGCTGGTGACAAACAATGTATACGTGATCGCACCAGCATCATGGCACGGCACTTCTTTGCTGATAAAAGTGAAGAGTTTATTAATGGGCAGGTAAATGCACTTTTATCTTCTTTAGATATTGACAGTGATGTCAATAGTAAAGGACCTCTGCCTTCAAGGTTTCGGGAACTAGACGATTATTGGAATGAATCCCAAGCTATAACAAAACCTGGTGCTCACGCTGCGCAAGGGTGGGTCACTGAATTTAGCCAACATAGGGTAGACCATGGTGATCCTAATTCATGGGCTCACTCATTTGAGCGACAACATGGTGCCAATGGTTGGGCTTCTGAATTTGAGCAGGAACAGTCCCAGTTGATGTCTGCAGATCATATGAGAGGTGGAAATATGGCAAGCTTAGCTGCAATGGAGCAGACTCGTATGCTTGCAAATACGCTGGCACAGAATGAAGACCCAAAGTTTCAGAAGTCAAGGTTTCTCCAGTTTGTGTCAAAAATGAGTCGTGGTGAACTCATTATTGATGATAATCAAGTCAAGCCGGCCACATCGTCTGGGGACTGGGCATCAGAATATCAACAGCAGTATAATGCGGGTCCTAGTTGGGCTGACGAATATGCACGTGGCGAGCTATCTCATGGACCCAATCAATGGGCAAATGAGTTTACTTCTGAACAAGAGCAGCATGGGTCAGTTGATGATCAGTGGGTCAATCAGTTTTCTAAGTTGCATGTTGATGACTGGGCAGAGGAATTTGGAAATCAGGTTGGTGAAGGACTCTTGGGGGACAGTTCAGCTGATACCTGGGTTAATGCATACGATGAGTATGTTAATGAGCAAGTAGCTACTAAACAGCATAGTGATGCTGCAAGGGGAGTTTACGTATTTTCCGATATGAATCCATATGTTGGTCACCCAAACCCACTAAAAGTAGGCCAGGAAATGTTCCACAAGGGTCTTCTGAGTGAAGCAGTGCTTGCATTAGAAGCTGAAGTTCTCAAGAACCCTGACAATGCTGAAGGTTGGAGGCTACTTGGAATAGCGCATGCAGAAAATGATGATCGATCAACAGTGTGTGCTATAGCAGGTATGATGCGTGCACAGGAGGCTGATCCGACAAATCTCGAAGTGCTTCTTGCTCTCGGAGTGAGTCATACAAATGAACTGGAGCAGGCAGCTGCTTTGAAATATTTATACGGATGGTTGCGCCATCACCAAAAGTATGGGGTGCTTGCCAAACCAGAGCTGTCTGATTCCTTGTACTATGCTGATGTAGCGAGATTATTCAATGAAGCTGCTCAGATGTCACCTGATGATGCTGATGTGCACATAGTACTTGGTGTGCTTTACAACTTGTCAAGAGAATTTGACAAAGCTATTGAGTCATTCCGGACAGCTTTGAAACTAAAGCCGCAAGATTACTCACTTTGGAACAAGCTTGGAGCAACACAAGCAAACAGTGTTCAGAGTGCTGATGCGATACTGGCTTATCAACAGGCACTAGATTTGAAGCCTAACTATGTTCGTGCATGGGCAAATATGGGCATCAGTTATGCCAACCAGGGTATGTATGAGGATTCCATACGTTACTATGTCCGAGCACTGACCATGAATCCAAAGGCAGATAACGGTTGGCAATATTTAAGAATTTCTTTGAGCTGTGCTTCTAGGAATGACATGTTAGAAGCTTGCGATTCTCGGAATCTAGATGTCCTCCAGAAAGAGTTTCCATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000268 GO:0003674 GO:0005048 GO:0005052 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005829 GO:0006605 GO:0006625 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016043 GO:0016558 GO:0016560 GO:0017038 GO:0031090 GO:0031903 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0042221 GO:0042277 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043574 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

TPR_1 TPR_11 TPR_16 TPR_8

Protein Analysis

751

Amino Acids

83.4

Weight (kDa)

4.9

Isoelectric Point (pI)

41.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_CcmH_CycH	PF23914	606 - 715	2.3e-07	Cytochrome c-type biogenesis protein H TPR domain
TPR_11	PF13414	664 - 694	9.9e-07	TPR repeat
TPR_1	PF00515	681 - 712	8e-08	Tetratricopeptide repeat
TPR_2	PF07719	681 - 712	7e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56290
fragaria_vesca	FvH4_3g41350 FvH4_3g41350 FvH4_3g41350 FvH4_3g41350
malus_domestica	MD03G1045600.v1.1 MD11G1047800.v1.1
prunus_persica	Prupe.6G036900_v2.0.a1
pyrus_communis	pycom03g03570 pycom11g03890
rosa_chinensis	RchiOBHm_Chr5g0074241
rosa_laevigata	RLG00000036460
rosa_multiflora	Rmu_sc0000573.1_g000053 Rmu_sc0004706.1_g000003
rosa_roxburghii	Rroxscaffold_1G00007230
rosa_rugosa	Rorug05G0429700
rosa_samantha	Rh5AG487300 Rh5BG507600 Rh5CG531200 Rh5DG520500
rosa_wichuraiana	Rw5G045230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	204
AasI	GACNNNNNNGTC	1 cut(s)	647
Acc16I	TGCGCA	1 cut(s)	744
Acc36I	ACCTGC	3 cut(s)	204, 598, 1592
AccB1I	GGYRCC	2 cut(s)	77, 830
AccB7I	CCANNNNNTGG	3 cut(s)	840, 1167, 1424
AccI	GTMKAC	3 cut(s)	146, 538, 780
AccII	CGCG	1 cut(s)	12
AccIII	TCCGGA	1 cut(s)	1905
AciI	CCGC	6 cut(s)	27, 41, 167, 367, 1109, 1928
AclWI	GGATC	2 cut(s)	785, 1622
AcoI	YGGCCR	2 cut(s)	184, 1059
AcsI	RAATTY	5 cut(s)	761, 851, 1268, 1880, 2163
AcuI	CTGAAG	2 cut(s)	1527, 1554
AcvI	CACGTG	1 cut(s)	1139
AcyI	GRCGYC	2 cut(s)	78, 149
AfaI	GTAC	2 cut(s)	1778, 1851
AfiI	CCNNNNNNNGG	5 cut(s)	509, 775, 840, 1167, 1424
AflIII	ACRYGT	1 cut(s)	2193
AgsI	TTSAA	9 cut(s)	130, 277, 401, 461, 675, 1702, 1804, 1918, 2026
AjnI	CCWGG	5 cut(s)	46, 727, 1319, 1452, 2076
AloI	GAACNNNNNNTCC	2 cut(s)	263, 295
Alw21I	GWGCWC	5 cut(s)	257, 736, 1618, 1845, 2119
Alw44I	GTGCAC	2 cut(s)	1614, 1841
AlwI	GGATC	2 cut(s)	785, 1622
Ama87I	CYCGRG	1 cut(s)	338
Aor13HI	TCCGGA	1 cut(s)	1905
AoxI	GGCC	6 cut(s)	49, 184, 341, 416, 1059, 1450
ApaLI	GTGCAC	2 cut(s)	1614, 1841
ApoI	RAATTY	5 cut(s)	761, 851, 1268, 1880, 2163
AseI	ATTAAT	1 cut(s)	600
Asp700I	GAANNNNTTC	1 cut(s)	1647
AspLEI	GCGC	5 cut(s)	12, 80, 745, 1561, 1725
AspS9I	GGNCC	5 cut(s)	341, 416, 662, 1112, 1157
AsuC2I	CCSGG	4 cut(s)	210, 243, 339, 340
AsuHPI	GGTGA	7 cut(s)	536, 800, 1037, 1298, 1421, 1721, 1815
AvaI	CYCGRG	1 cut(s)	338
AvaII	GGWCC	3 cut(s)	662, 1112, 1157
BaeGI	GKGCMC	2 cut(s)	1618, 1845
BaeI	ACNNNNGTAYC	4 cut(s)	128, 161, 1308, 1341
BanI	GGYRCC	2 cut(s)	77, 830
BanII	GRGCYC	2 cut(s)	257, 808
BbrPI	CACGTG	1 cut(s)	1139
BbsI	GAAGAC	2 cut(s)	975, 1466
Bbv12I	GWGCWC	5 cut(s)	257, 736, 1618, 1845, 2119
BbvCI	CCTCAGC	1 cut(s)	393
BccI	CCATC	4 cut(s)	281, 407, 1710, 1734
BceAI	ACGGC	4 cut(s)	199, 214, 466, 581
BciT130I	CCWGG	5 cut(s)	48, 729, 1321, 1454, 2078
BclI	TGATCA	2 cut(s)	223, 1216
BcnI	CCSGG	4 cut(s)	210, 243, 339, 340
BfaI	CTAG	5 cut(s)	689, 1116, 2018, 2184, 2222
BfmI	CTRYAG	2 cut(s)	882, 1596
BfoI	RGCGCY	1 cut(s)	81
BfuAI	ACCTGC	3 cut(s)	204, 598, 1592
BlpI	GCTNAGC	1 cut(s)	916
BmcAI	AGTACT	1 cut(s)	1851
Bme1390I	CCNGG	9 cut(s)	48, 210, 243, 339, 340, 729, 1321, 1454, 2078
Bme18I	GGWCC	3 cut(s)	662, 1112, 1157
BmeT110I	CYCGRG	1 cut(s)	338
BmgT120I	GGNCC	5 cut(s)	341, 416, 662, 1112, 1157
BmiI	GGNNCC	7 cut(s)	45, 79, 103, 214, 832, 1113, 1159
BmrFI	CCNGG	9 cut(s)	48, 210, 243, 339, 340, 729, 1321, 1454, 2078
BmrI	ACTGGG	3 cut(s)	865, 1087, 1267
BmsI	GCATC	7 cut(s)	564, 1091, 1369, 1599, 1822, 1981, 2070
BmuI	ACTGGG	3 cut(s)	865, 1087, 1267
BpiI	GAAGAC	2 cut(s)	975, 1466
BpmI	CTGGAG	3 cut(s)	983, 1703, 2216
Bpu10I	CCTNAGC	1 cut(s)	393
Bpu1102I	GCTNAGC	1 cut(s)	916
BpuEI	CTTGAG	1 cut(s)	1499
BpuMI	CCSGG	4 cut(s)	210, 243, 339, 340
Bsa29I	ATCGAT	1 cut(s)	1579
BsaAI	YACGTR	3 cut(s)	542, 1139, 1399
BsaBI	GATNNNNATC	2 cut(s)	1044, 1413
BsaHI	GRCGYC	2 cut(s)	78, 149
BsaJI	CCNNGG	6 cut(s)	187, 208, 338, 784, 1320, 2077
BsaWI	WCCGGW	1 cut(s)	1905
BsaXI	ACNNNNNCTCC	4 cut(s)	263, 293, 1383, 1413
Bsc4I	CCNNNNNNNGG	5 cut(s)	509, 775, 840, 1167, 1424
Bse118I	RCCGGY	2 cut(s)	23, 1057
Bse1I	ACTGG	7 cut(s)	503, 871, 1000, 1082, 1262, 1686, 2004
Bse3DI	GCAATG	1 cut(s)	930
Bse8I	GATNNNNATC	2 cut(s)	1044, 1413
BseAI	TCCGGA	1 cut(s)	1905
BseBI	CCWGG	5 cut(s)	48, 729, 1321, 1454, 2078
BseCI	ATCGAT	1 cut(s)	1579
BseDI	CCNNGG	6 cut(s)	187, 208, 338, 784, 1320, 2077
BseGI	GGATG	2 cut(s)	418, 1721
BseJI	GATNNNNATC	2 cut(s)	1044, 1413
BseLI	CCNNNNNNNGG	5 cut(s)	509, 775, 840, 1167, 1424
BseMI	GCAATG	1 cut(s)	930
BseMII	CTCAG	6 cut(s)	153, 263, 347, 407, 1469, 1829
BseNI	ACTGG	7 cut(s)	503, 871, 1000, 1082, 1262, 1686, 2004
BseRI	GAGGAG	3 cut(s)	94, 97, 381
BseSI	GKGCMC	2 cut(s)	1618, 1845
Bsh1236I	CGCG	1 cut(s)	12
Bsh1285I	CGRYCG	1 cut(s)	367
BshFI	GGCC	6 cut(s)	51, 186, 343, 418, 1061, 1452
BshNI	GGYRCC	2 cut(s)	77, 830
BshVI	ATCGAT	1 cut(s)	1579
BsiEI	CGRYCG	1 cut(s)	367
BsiHKAI	GWGCWC	5 cut(s)	257, 736, 1618, 1845, 2119
BsiHKCI	CYCGRG	1 cut(s)	338
BsiSI	CCGG	6 cut(s)	24, 210, 243, 339, 1058, 1906
BslFI	GGGAC	4 cut(s)	329, 853, 1088, 1316
BslI	CCNNNNNNNGG	5 cut(s)	509, 775, 840, 1167, 1424
BsmFI	GGGAC	4 cut(s)	329, 853, 1088, 1316
BsmI	GAATGC	1 cut(s)	483
BsnI	GGCC	6 cut(s)	51, 186, 343, 418, 1061, 1452
BsoBI	CYCGRG	1 cut(s)	338
Bsp1286I	GDGCHC	6 cut(s)	257, 736, 808, 1618, 1845, 2119
Bsp13I	TCCGGA	1 cut(s)	1905
Bsp143I	GATC	8 cut(s)	223, 544, 790, 886, 1216, 1576, 1580, 1627
Bsp1720I	GCTNAGC	1 cut(s)	916
Bsp19I	CCATGG	2 cut(s)	187, 784
BspACI	CCGC	6 cut(s)	27, 41, 167, 367, 1109, 1928
BspANI	GGCC	6 cut(s)	51, 186, 343, 418, 1061, 1452
BspCNI	CTCAG	6 cut(s)	154, 262, 346, 406, 1470, 1828
BspDI	ATCGAT	1 cut(s)	1579
BspEI	TCCGGA	1 cut(s)	1905
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	7 cut(s)	45, 79, 103, 214, 832, 1113, 1159
BspMAI	CTGCAG	1 cut(s)	886
BspMI	ACCTGC	3 cut(s)	204, 598, 1592
BspPI	GGATC	2 cut(s)	785, 1622
BspT107I	GGYRCC	2 cut(s)	77, 830
BsrDI	GCAATG	1 cut(s)	930
BsrFI	RCCGGY	2 cut(s)	23, 1057
BsrI	ACTGG	7 cut(s)	503, 871, 1000, 1082, 1262, 1686, 2004
BssAI	RCCGGY	2 cut(s)	23, 1057
BssECI	CCNNGG	6 cut(s)	187, 208, 338, 784, 1320, 2077
BssMI	GATC	8 cut(s)	223, 544, 790, 886, 1216, 1576, 1580, 1627
BssNAI	GTATAC	1 cut(s)	539
BssNI	GRCGYC	2 cut(s)	78, 149
BssT1I	CCWWGG	2 cut(s)	187, 784
Bst1107I	GTATAC	1 cut(s)	539
Bst2UI	CCWGG	5 cut(s)	48, 729, 1321, 1454, 2078
Bst4CI	ACNGT	6 cut(s)	644, 867, 1307, 1588, 1976, 2147
Bst6I	CTCTTC	1 cut(s)	585
BstACI	GRCGYC	2 cut(s)	78, 149
BstAPI	GCANNNNNTGC	2 cut(s)	38, 1493
BstBAI	YACGTR	3 cut(s)	542, 1139, 1399
BstDEI	CTNAG	8 cut(s)	162, 249, 333, 393, 916, 1239, 1478, 1815
BstDSI	CCRYGG	2 cut(s)	187, 784
BstEII	GGTNACC	1 cut(s)	1427
BstF5I	GGATG	2 cut(s)	418, 1721
BstFNI	CGCG	1 cut(s)	12
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	5 cut(s)	12, 80, 745, 1561, 1725
BstKTI	GATC	8 cut(s)	226, 547, 793, 889, 1219, 1579, 1583, 1630
BstMBI	GATC	8 cut(s)	223, 544, 790, 886, 1216, 1576, 1580, 1627
BstMCI	CGRYCG	1 cut(s)	367
BstNI	CCWGG	5 cut(s)	48, 729, 1321, 1454, 2078
BstNSI	RCATGY	3 cut(s)	1250, 1565, 2197
BstPI	GGTNACC	1 cut(s)	1427
BstSCI	CCNGG	9 cut(s)	46, 208, 241, 337, 338, 727, 1319, 1452, 2076
BstSFI	CTRYAG	2 cut(s)	882, 1596
BstSLI	GKGCMC	2 cut(s)	1618, 1845
BstSNI	TACGTA	1 cut(s)	1399
BstUI	CGCG	1 cut(s)	12
BstV2I	GAAGAC	2 cut(s)	975, 1466
BstXI	CCANNNNNNTGG	2 cut(s)	559, 1739
BstZ17I	GTATAC	1 cut(s)	539
Bsu15I	ATCGAT	1 cut(s)	1579
BsuRI	GGCC	6 cut(s)	51, 186, 343, 418, 1061, 1452
BsuTUI	ATCGAT	1 cut(s)	1579
BtgI	CCRYGG	2 cut(s)	187, 784
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	2 cut(s)	418, 1721
BtsI	GCAGTG	1 cut(s)	1494
BtsIMutI	CAGTG	8 cut(s)	510, 649, 756, 1226, 1494, 1593, 1981, 2117
BveI	ACCTGC	3 cut(s)	204, 598, 1592
CfoI	GCGC	5 cut(s)	12, 80, 745, 1561, 1725
Cfr10I	RCCGGY	2 cut(s)	23, 1057
Cfr13I	GGNCC	5 cut(s)	341, 416, 662, 1112, 1157
Cfr9I	CCCGGG	1 cut(s)	338
ClaI	ATCGAT	1 cut(s)	1579
CseI	GACGC	1 cut(s)	157
CsiI	ACCWGGT	1 cut(s)	727
Csp6I	GTAC	2 cut(s)	1777, 1850
CviQI	GTAC	2 cut(s)	1777, 1850
DdeI	CTNAG	8 cut(s)	162, 249, 333, 393, 916, 1239, 1478, 1815
DinI	GGCGCC	1 cut(s)	79
DpnI	GATC	8 cut(s)	225, 546, 792, 888, 1218, 1578, 1582, 1629
DpnII	GATC	8 cut(s)	223, 544, 790, 886, 1216, 1576, 1580, 1627
DrdI	GACNNNNNNGTC	1 cut(s)	647
DseDI	GACNNNNNNGTC	1 cut(s)	647
EaeI	YGGCCR	2 cut(s)	184, 1059
Eam1104I	CTCTTC	1 cut(s)	585
EarI	CTCTTC	1 cut(s)	585
EciI	GGCGGA	1 cut(s)	42
Ecl136II	GAGCTC	1 cut(s)	255
Eco105I	TACGTA	1 cut(s)	1399
Eco130I	CCWWGG	2 cut(s)	187, 784
Eco24I	GRGCYC	2 cut(s)	257, 808
Eco47I	GGWCC	3 cut(s)	662, 1112, 1157
Eco53kI	GAGCTC	1 cut(s)	255
Eco57I	CTGAAG	2 cut(s)	1527, 1554
Eco72I	CACGTG	1 cut(s)	1139
Eco88I	CYCGRG	1 cut(s)	338
Eco91I	GGTNACC	1 cut(s)	1427
EcoICRI	GAGCTC	1 cut(s)	255
EcoO109I	RGGNCCY	2 cut(s)	662, 1112
EcoO65I	GGTNACC	1 cut(s)	1427
EcoRII	CCWGG	5 cut(s)	46, 727, 1319, 1452, 2076
EcoT14I	CCWWGG	2 cut(s)	187, 784
EcoT22I	ATGCAT	2 cut(s)	351, 1333
EcoT38I	GRGCYC	2 cut(s)	257, 808
EgeI	GGCGCC	1 cut(s)	79
EheI	GGCGCC	1 cut(s)	79
ErhI	CCWWGG	2 cut(s)	187, 784
FalI	AAGNNNNNCTT	6 cut(s)	1476, 1508, 1635, 1667, 2152, 2184
FaqI	GGGAC	4 cut(s)	329, 853, 1088, 1316
FauI	CCCGC	1 cut(s)	1102
FauNDI	CATATG	3 cut(s)	351, 891, 1420
FbaI	TGATCA	2 cut(s)	223, 1216
FblI	GTMKAC	3 cut(s)	146, 538, 780
FokI	GGATG	2 cut(s)	425, 1728
FriOI	GRGCYC	2 cut(s)	257, 808
FspBI	CTAG	5 cut(s)	689, 1116, 2018, 2184, 2222
FspI	TGCGCA	1 cut(s)	744
GlaI	GCGC	5 cut(s)	11, 79, 744, 1560, 1724
GsuI	CTGGAG	3 cut(s)	983, 1703, 2216
HaeII	RGCGCY	1 cut(s)	81
HaeIII	GGCC	6 cut(s)	51, 186, 343, 418, 1061, 1452
HapII	CCGG	6 cut(s)	24, 210, 243, 339, 1058, 1906
HgaI	GACGC	1 cut(s)	157
HhaI	GCGC	5 cut(s)	12, 80, 745, 1561, 1725
Hin1I	GRCGYC	2 cut(s)	78, 149
Hin6I	GCGC	5 cut(s)	10, 78, 743, 1559, 1723
HinP1I	GCGC	5 cut(s)	10, 78, 743, 1559, 1723
HincII	GTYRAC	1 cut(s)	147
HindII	GTYRAC	1 cut(s)	147
HindIII	AAGCTT	4 cut(s)	439, 913, 1952, 2202
HpaII	CCGG	6 cut(s)	24, 210, 243, 339, 1058, 1906
HphI	GGTGA	7 cut(s)	536, 800, 1037, 1298, 1421, 1721, 1815
Hpy166II	GTNNAC	8 cut(s)	147, 539, 781, 1028, 1182, 1396, 1616, 1843
Hpy188III	TCNNGA	8 cut(s)	179, 683, 1516, 1640, 1875, 1906, 2222, 2233
Hpy8I	GTNNAC	8 cut(s)	147, 539, 781, 1028, 1182, 1396, 1616, 1843
Hpy99I	CGWCG	3 cut(s)	148, 151, 185
HpyAV	CCTTC	5 cut(s)	124, 150, 681, 1283, 1529
HpyCH4III	ACNGT	6 cut(s)	644, 867, 1307, 1588, 1976, 2147
HpyCH4IV	ACGT	4 cut(s)	541, 1138, 1398, 2101
HpyF3I	CTNAG	8 cut(s)	162, 249, 333, 393, 916, 1239, 1478, 1815
HpySE526I	ACGT	4 cut(s)	541, 1138, 1398, 2101
Hsp92I	GRCGYC	2 cut(s)	78, 149
HspAI	GCGC	5 cut(s)	10, 78, 743, 1559, 1723
KasI	GGCGCC	1 cut(s)	77
Kpn2I	TCCGGA	1 cut(s)	1905
KroI	GCCGGC	1 cut(s)	1057
KroNI	GCCGGC	1 cut(s)	1059
Ksp22I	TGATCA	2 cut(s)	223, 1216
Kzo9I	GATC	8 cut(s)	223, 544, 790, 886, 1216, 1576, 1580, 1627
LmnI	GCTCC	9 cut(s)	29, 107, 210, 218, 383, 499, 928, 1684, 1958
LweI	GCATC	7 cut(s)	564, 1091, 1369, 1599, 1822, 1981, 2070
MabI	ACCWGGT	1 cut(s)	727
MaeI	CTAG	5 cut(s)	689, 1116, 2018, 2184, 2222
MaeII	ACGT	4 cut(s)	541, 1138, 1398, 2101
MaeIII	GTNAC	6 cut(s)	19, 524, 754, 1427, 1821, 2102
MalI	GATC	8 cut(s)	225, 546, 792, 888, 1218, 1578, 1582, 1629
MboI	GATC	8 cut(s)	223, 544, 790, 886, 1216, 1576, 1580, 1627
MboII	GAAGA	7 cut(s)	48, 51, 257, 602, 618, 980, 1466
MhlI	GDGCHC	6 cut(s)	257, 736, 808, 1618, 1845, 2119
MluCI	AATT	6 cut(s)	761, 796, 851, 1268, 1880, 2163
Mly113I	GGCGCC	1 cut(s)	78
MlyI	GAGTC	5 cut(s)	928, 1027, 1287, 1675, 1907
MmeI	TCCRAC	2 cut(s)	1520, 1655
Mph1103I	ATGCAT	2 cut(s)	351, 1333
MroI	TCCGGA	1 cut(s)	1905
MroNI	GCCGGC	1 cut(s)	1057
MroXI	GAANNNNTTC	1 cut(s)	1647
MseI	TTAA	4 cut(s)	600, 1326, 1347, 2159
MslI	CAYNNNNRTG	3 cut(s)	1251, 1377, 1674
MspA1I	CMGCKG	2 cut(s)	1313, 1694
MspI	CCGG	6 cut(s)	24, 210, 243, 339, 1058, 1906
MspR9I	CCNGG	9 cut(s)	48, 210, 243, 339, 340, 729, 1321, 1454, 2078
Mva1269I	GAATGC	1 cut(s)	483
MvaI	CCWGG	5 cut(s)	48, 729, 1321, 1454, 2078
MvnI	CGCG	1 cut(s)	12
NaeI	GCCGGC	1 cut(s)	1059
NarI	GGCGCC	1 cut(s)	78
NciI	CCSGG	4 cut(s)	210, 243, 339, 340
NcoI	CCATGG	2 cut(s)	187, 784
NdeI	CATATG	3 cut(s)	351, 891, 1420
NdeII	GATC	8 cut(s)	223, 544, 790, 886, 1216, 1576, 1580, 1627
NgoMIV	GCCGGC	1 cut(s)	1057
NlaIV	GGNNCC	7 cut(s)	45, 79, 103, 214, 832, 1113, 1159
NmuCI	GTSAC	4 cut(s)	524, 754, 1427, 1821
NsbI	TGCGCA	1 cut(s)	744
NsiI	ATGCAT	2 cut(s)	351, 1333
NspI	RCATGY	3 cut(s)	1250, 1565, 2197
PaeI	GCATGC	1 cut(s)	1565
PaqCI	CACCTGC	1 cut(s)	204
PciI	ACATGT	1 cut(s)	2193
PcsI	WCGNNNNNNNCGW	2 cut(s)	149, 1404
PctI	GAATGC	1 cut(s)	483
PdiI	GCCGGC	1 cut(s)	1059
PdmI	GAANNNNTTC	1 cut(s)	1647
PfeI	GAWTC	7 cut(s)	707, 1414, 1769, 2093, 2128, 2210, 2218
PflMI	CCANNNNNTGG	3 cut(s)	840, 1167, 1424
PleI	GAGTC	5 cut(s)	928, 1026, 1287, 1674, 1906
PluTI	GGCGCC	1 cut(s)	81
PmaCI	CACGTG	1 cut(s)	1139
PmlI	CACGTG	1 cut(s)	1139
PpsI	GAGTC	5 cut(s)	928, 1026, 1287, 1674, 1906
Ppu21I	YACGTR	3 cut(s)	542, 1139, 1399
PpuMI	RGGWCCY	2 cut(s)	662, 1112
PscI	ACATGT	1 cut(s)	2193
PshBI	ATTAAT	1 cut(s)	600
Psp124BI	GAGCTC	1 cut(s)	257
Psp5II	RGGWCCY	2 cut(s)	662, 1112
Psp6I	CCWGG	5 cut(s)	46, 727, 1319, 1452, 2076
PspCI	CACGTG	1 cut(s)	1139
PspEI	GGTNACC	1 cut(s)	1427
PspGI	CCWGG	5 cut(s)	46, 727, 1319, 1452, 2076
PspN4I	GGNNCC	7 cut(s)	45, 79, 103, 214, 832, 1113, 1159
PspPI	GGNCC	5 cut(s)	341, 416, 662, 1112, 1157
PspPPI	RGGWCCY	2 cut(s)	662, 1112
PstI	CTGCAG	1 cut(s)	886
PvuII	CAGCTG	2 cut(s)	1313, 1694
RsaI	GTAC	2 cut(s)	1778, 1851
RsaNI	GTAC	2 cut(s)	1777, 1850
RseI	CAYNNNNRTG	3 cut(s)	1251, 1377, 1674
SacI	GAGCTC	1 cut(s)	257
SalI	GTCGAC	1 cut(s)	145
SaqAI	TTAA	4 cut(s)	600, 1326, 1347, 2159
Sau3AI	GATC	8 cut(s)	223, 544, 790, 886, 1216, 1576, 1580, 1627
Sau96I	GGNCC	5 cut(s)	341, 416, 662, 1112, 1157
ScaI	AGTACT	1 cut(s)	1851
SchI	GAGTC	5 cut(s)	928, 1027, 1287, 1675, 1907
ScrFI	CCNGG	9 cut(s)	48, 210, 243, 339, 340, 729, 1321, 1454, 2078
SduI	GDGCHC	6 cut(s)	257, 736, 808, 1618, 1845, 2119
SexAI	ACCWGGT	1 cut(s)	727
SfaNI	GCATC	7 cut(s)	564, 1091, 1369, 1599, 1822, 1981, 2070
SfcI	CTRYAG	2 cut(s)	882, 1596
SfoI	GGCGCC	1 cut(s)	79
SgrDI	CGTCGACG	1 cut(s)	145
SinI	GGWCC	3 cut(s)	662, 1112, 1157
SmaI	CCCGGG	1 cut(s)	340
SmiMI	CAYNNNNRTG	3 cut(s)	1251, 1377, 1674
SmlI	CTYRAG	1 cut(s)	1514
SmoI	CTYRAG	1 cut(s)	1514
SnaBI	TACGTA	1 cut(s)	1399
SphI	GCATGC	1 cut(s)	1565
SrfI	GCCCGGGC	1 cut(s)	340
Sse9I	AATT	6 cut(s)	761, 796, 851, 1268, 1880, 2163
SsiI	CCGC	6 cut(s)	27, 41, 167, 367, 1109, 1928
SspDI	GGCGCC	1 cut(s)	77
SspI	AATATT	2 cut(s)	1706, 2156
SspMI	CTAG	5 cut(s)	689, 1116, 2018, 2184, 2222
SstI	GAGCTC	1 cut(s)	257
StyD4I	CCNGG	9 cut(s)	46, 208, 241, 337, 338, 727, 1319, 1452, 2076
StyI	CCWWGG	2 cut(s)	187, 784
TaaI	ACNGT	6 cut(s)	644, 867, 1307, 1588, 1976, 2147
TaiI	ACGT	4 cut(s)	544, 1141, 1401, 2104
TaqI	TCGA	3 cut(s)	146, 1579, 1641
TasI	AATT	6 cut(s)	761, 796, 851, 1268, 1880, 2163
TatI	WGTACW	2 cut(s)	1776, 1849
TauI	GCSGC	2 cut(s)	169, 1930
TfiI	GAWTC	7 cut(s)	707, 1414, 1769, 2093, 2128, 2210, 2218
Tru1I	TTAA	4 cut(s)	600, 1326, 1347, 2159
Tru9I	TTAA	4 cut(s)	600, 1326, 1347, 2159
TscAI	CASTG	8 cut(s)	510, 649, 763, 1226, 1494, 1593, 1981, 2124
TseFI	GTSAC	4 cut(s)	524, 754, 1427, 1821
Tsp45I	GTSAC	4 cut(s)	524, 754, 1427, 1821
TspDTI	ATGAA	7 cut(s)	720, 789, 981, 1427, 1692, 1821, 2141
TspGWI	ACGGA	2 cut(s)	271, 1728
TspMI	CCCGGG	1 cut(s)	338
TspRI	CASTG	8 cut(s)	510, 649, 763, 1226, 1494, 1593, 1981, 2124
Van91I	CCANNNNNTGG	3 cut(s)	840, 1167, 1424
VneI	GTGCAC	2 cut(s)	1614, 1841
VpaK11BI	GGWCC	3 cut(s)	662, 1112, 1157
VspI	ATTAAT	1 cut(s)	600
XapI	RAATTY	5 cut(s)	761, 851, 1268, 1880, 2163
XbaI	TCTAGA	1 cut(s)	2221
XceI	RCATGY	3 cut(s)	1250, 1565, 2197
XmaI	CCCGGG	1 cut(s)	338
XmiI	GTMKAC	3 cut(s)	146, 538, 780
XmnI	GAANNNNTTC	1 cut(s)	1647
XspI	CTAG	5 cut(s)	689, 1116, 2018, 2184, 2222
ZrmI	AGTACT	1 cut(s)	1851
Zsp2I	ATGCAT	2 cut(s)	351, 1333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.