Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0006110

Physical Location & Seq

Genomic Coordinates Forward (+)

5992747 .. 5996730

Gene Structure 3984 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGCTTCCATTGTTGAATCTGGCTGGAGGTATCTGATCACAAATTTCAACGACTTTCAACTGGCATGTCTAGGAAGTTTCTTTCTCCATGAAAGTGTTTTCTTCTTTTCTGGACTCCCTTTTATATATCTTGAGAGGGCAGGATGGCTGAGCAAGTACAAGATTCAGACAAAAAATAACAGCCCTGCAGCCCAGGAGAAATGTATTACTCGCCTAGTCCTGTATCATCTTTGTGTCAATCTGCCAGTTATGATTGCTTCATATCCTGTCTTCAAATTCATGGGCATGCGGAGTAGTCTTCCATTGCCGTCCTGGAAAGTTGTTTCCACTCAGATCATTTTCTACTTCATCCTCGAGGATTTTGTATTCTATTGGGGACATAGGGTTCTGCATACAAAGTGGCTGTACAAGCATGTGCACAGTATCCATCATGAGTATGCTACACCATTTGGACTGACTTCTGAATATGCTCACCCGGCCGAGATATTATTCCTTGGCTTTGCCACCATTATTGGTCCTGCCATTACTGGGCCCCACCTAATTACTCTGTGGTTATGGATGGTACTTAGAGTGCTGGAGACTGTCGAGGCACATTGTGGTTACCATTTCCCATGGAGCCTCTCAAACTTTTTACCTTTGTATGGAGGTGCTGATTTTCACGACTACCATCACCGTTTGCTTTACACCAAGTCTGGCAATTATTCATCAACTTTTGTTTACATGGACAGGTTATTTGGAACTGATACAGGTTACAGAAAGCTGAAAGTGCTGAAGAAAGCCGGAGTAGAAGATGACGGCAAGGAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000254 GO:0003006 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016709 GO:0022414 GO:0030258 GO:0031967 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0034440 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0071704 GO:0080065 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

270

Amino Acids

31.25

Weight (kDa)

8.54

Isoelectric Point (pI)

34.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	113 - 247	1.3e-27	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07420 AT1G07420 AT2G29390 AT2G29390 AT2G29390 AT2G29390 AT2G29390 AT2G29390
fragaria_vesca	FvH4_3g37020 FvH4_3g37020
malus_domestica	MD03G1085200.v1.1 MD11G1093000.v1.1
prunus_persica	Prupe.6G068700_v2.0.a1
pyrus_communis	pycom03g06740 pycom11g07860
rosa_chinensis	RchiOBHm_Chr5g0066411
rosa_laevigata	RLG00000035861
rosa_multiflora	Rmu_ssc0000249.1_g000020
rosa_roxburghii	Rroxscaffold_1G00014470 Rroxscaffold_1G00014630
rosa_rugosa	Rorug05G0378100 Rorug05G0378200
rosa_samantha	Rh5AG436900 Rh5BG453100 Rh5CG475500 Rh5DG468300
rosa_wichuraiana	Rw5G040900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	353
AciI	CCGC	1 cut(s)	289
AcoI	YGGCCR	1 cut(s)	477
AcsI	RAATTY	2 cut(s)	43, 275
AcuI	CTGAAG	1 cut(s)	791
AdeI	CACNNNGTG	1 cut(s)	596
AfaI	GTAC	3 cut(s)	158, 407, 564
AfiI	CCNNNNNNNGG	2 cut(s)	528, 641
AgsI	TTSAA	4 cut(s)	17, 49, 59, 274
AjnI	CCWGG	2 cut(s)	192, 311
AloI	GAACNNNNNNTCC	2 cut(s)	369, 401
AluBI	AGCT	1 cut(s)	760
AluI	AGCT	1 cut(s)	760
Alw21I	GWGCWC	1 cut(s)	420
Alw26I	GTCTC	1 cut(s)	572
Alw44I	GTGCAC	1 cut(s)	416
Ama87I	CYCGRG	1 cut(s)	353
AoxI	GGCC	2 cut(s)	477, 530
ApaI	GGGCCC	1 cut(s)	534
ApaLI	GTGCAC	1 cut(s)	416
ApeKI	GCWGC	1 cut(s)	188
ApoI	RAATTY	2 cut(s)	43, 275
ArsI	GACNNNNNNTTYG	2 cut(s)	716, 748
AspS9I	GGNCC	3 cut(s)	515, 530, 531
AsuC2I	CCSGG	1 cut(s)	476
AsuHPI	GGTGA	2 cut(s)	464, 662
AvaI	CYCGRG	1 cut(s)	353
AvaII	GGWCC	1 cut(s)	515
BaeGI	GKGCMC	2 cut(s)	420, 534
BanII	GRGCYC	1 cut(s)	534
BbsI	GAAGAC	2 cut(s)	262, 290
Bbv12I	GWGCWC	1 cut(s)	420
BbvI	GCAGC	1 cut(s)	200
BccI	CCATC	4 cut(s)	138, 435, 553, 675
BceAI	ACGGC	1 cut(s)	292
BciT130I	CCWGG	2 cut(s)	194, 313
BciVI	GTATCC	1 cut(s)	434
BclI	TGATCA	1 cut(s)	36
BcnI	CCSGG	1 cut(s)	476
BcoDI	GTCTC	1 cut(s)	572
BfaI	CTAG	2 cut(s)	71, 215
BfmI	CTRYAG	1 cut(s)	186
BfuI	GTATCC	1 cut(s)	434
BisI	GCNGC	1 cut(s)	189
BlpI	GCTNAGC	1 cut(s)	149
BlsI	GCNGC	1 cut(s)	190
Bme1390I	CCNGG	3 cut(s)	194, 313, 476
Bme18I	GGWCC	1 cut(s)	515
BmeT110I	CYCGRG	1 cut(s)	353
BmgT120I	GGNCC	3 cut(s)	515, 530, 531
BmiI	GGNNCC	3 cut(s)	532, 533, 617
BmrFI	CCNGG	3 cut(s)	194, 313, 476
BmrI	ACTGGG	1 cut(s)	537
BmuI	ACTGGG	1 cut(s)	537
BpiI	GAAGAC	2 cut(s)	262, 290
BpmI	CTGGAG	2 cut(s)	46, 596
Bpu1102I	GCTNAGC	1 cut(s)	149
BpuEI	CTTGAG	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	476
BsaJI	CCNNGG	3 cut(s)	192, 493, 611
Bsc4I	CCNNNNNNNGG	2 cut(s)	528, 641
Bse1I	ACTGG	3 cut(s)	66, 245, 532
Bse3DI	GCAATG	1 cut(s)	302
BseBI	CCWGG	2 cut(s)	194, 313
BseDI	CCNNGG	3 cut(s)	192, 493, 611
BseGI	GGATG	3 cut(s)	149, 348, 564
BseLI	CCNNNNNNNGG	2 cut(s)	528, 641
BseMI	GCAATG	1 cut(s)	302
BseMII	CTCAG	2 cut(s)	140, 344
BseNI	ACTGG	3 cut(s)	66, 245, 532
BseSI	GKGCMC	2 cut(s)	420, 534
BseX3I	CGGCCG	1 cut(s)	477
BseXI	GCAGC	1 cut(s)	200
Bsh1285I	CGRYCG	1 cut(s)	480
BshFI	GGCC	2 cut(s)	479, 532
BsiEI	CGRYCG	1 cut(s)	480
BsiHKAI	GWGCWC	1 cut(s)	420
BsiHKCI	CYCGRG	1 cut(s)	353
BsiSI	CCGG	2 cut(s)	476, 780
BslFI	GGGAC	1 cut(s)	390
BslI	CCNNNNNNNGG	2 cut(s)	528, 641
BsmAI	GTCTC	1 cut(s)	572
BsmFI	GGGAC	1 cut(s)	390
BsnI	GGCC	2 cut(s)	479, 532
BsoBI	CYCGRG	1 cut(s)	353
Bsp120I	GGGCCC	1 cut(s)	530
Bsp1286I	GDGCHC	2 cut(s)	420, 534
Bsp1407I	TGTACA	1 cut(s)	405
Bsp143I	GATC	2 cut(s)	36, 333
Bsp1720I	GCTNAGC	1 cut(s)	149
Bsp19I	CCATGG	1 cut(s)	611
BspACI	CCGC	1 cut(s)	289
BspANI	GGCC	2 cut(s)	479, 532
BspCNI	CTCAG	2 cut(s)	141, 343
BspHI	TCATGA	1 cut(s)	430
BspLI	GGNNCC	3 cut(s)	532, 533, 617
BspMAI	CTGCAG	1 cut(s)	190
BsrDI	GCAATG	1 cut(s)	302
BsrGI	TGTACA	1 cut(s)	405
BsrI	ACTGG	3 cut(s)	66, 245, 532
BssECI	CCNNGG	3 cut(s)	192, 493, 611
BssMI	GATC	2 cut(s)	36, 333
BssT1I	CCWWGG	2 cut(s)	493, 611
Bst2UI	CCWGG	2 cut(s)	194, 313
Bst4CI	ACNGT	3 cut(s)	422, 583, 674
BstAUI	TGTACA	1 cut(s)	405
BstC8I	GCNNGC	1 cut(s)	287
BstDEI	CTNAG	3 cut(s)	149, 330, 566
BstDSI	CCRYGG	1 cut(s)	611
BstEII	GGTNACC	1 cut(s)	599
BstF5I	GGATG	3 cut(s)	149, 348, 564
BstKTI	GATC	2 cut(s)	39, 336
BstMAI	GTCTC	1 cut(s)	572
BstMBI	GATC	2 cut(s)	36, 333
BstMCI	CGRYCG	1 cut(s)	480
BstMWI	GCNNNNNNNGC	3 cut(s)	409, 476, 766
BstNI	CCWGG	2 cut(s)	194, 313
BstNSI	RCATGY	3 cut(s)	69, 289, 416
BstPI	GGTNACC	1 cut(s)	599
BstSCI	CCNGG	3 cut(s)	192, 311, 474
BstSFI	CTRYAG	1 cut(s)	186
BstSLI	GKGCMC	2 cut(s)	420, 534
BstV1I	GCAGC	1 cut(s)	200
BstV2I	GAAGAC	2 cut(s)	262, 290
BstZI	CGGCCG	1 cut(s)	477
BsuI	GTATCC	1 cut(s)	434
BsuRI	GGCC	2 cut(s)	479, 532
BtgI	CCRYGG	1 cut(s)	611
BtsCI	GGATG	3 cut(s)	149, 348, 564
Cac8I	GCNNGC	1 cut(s)	287
CciI	TCATGA	1 cut(s)	430
Cfr13I	GGNCC	3 cut(s)	515, 530, 531
Csp6I	GTAC	3 cut(s)	157, 406, 563
CspCI	CAANNNNNGTGG	2 cut(s)	493, 528
CviAII	CATG	8 cut(s)	66, 89, 280, 286, 413, 431, 612, 721
CviQI	GTAC	3 cut(s)	157, 406, 563
DdeI	CTNAG	3 cut(s)	149, 330, 566
DpnI	GATC	2 cut(s)	38, 335
DpnII	GATC	2 cut(s)	36, 333
DraIII	CACNNNGTG	1 cut(s)	596
EaeI	YGGCCR	1 cut(s)	477
EagI	CGGCCG	1 cut(s)	477
EclXI	CGGCCG	1 cut(s)	477
Eco130I	CCWWGG	2 cut(s)	493, 611
Eco24I	GRGCYC	1 cut(s)	534
Eco47I	GGWCC	1 cut(s)	515
Eco52I	CGGCCG	1 cut(s)	477
Eco57I	CTGAAG	1 cut(s)	791
Eco88I	CYCGRG	1 cut(s)	353
Eco91I	GGTNACC	1 cut(s)	599
EcoO109I	RGGNCCY	1 cut(s)	531
EcoO65I	GGTNACC	1 cut(s)	599
EcoRII	CCWGG	2 cut(s)	192, 311
EcoT14I	CCWWGG	2 cut(s)	493, 611
EcoT38I	GRGCYC	1 cut(s)	534
ErhI	CCWWGG	2 cut(s)	493, 611
FaeI	CATG	8 cut(s)	69, 92, 283, 289, 416, 434, 615, 724
FaqI	GGGAC	1 cut(s)	390
FatI	CATG	8 cut(s)	65, 88, 279, 285, 412, 430, 611, 720
FbaI	TGATCA	1 cut(s)	36
Fnu4HI	GCNGC	1 cut(s)	189
FokI	GGATG	3 cut(s)	156, 335, 571
FriOI	GRGCYC	1 cut(s)	534
Fsp4HI	GCNGC	1 cut(s)	189
FspBI	CTAG	2 cut(s)	71, 215
GluI	GCNGC	1 cut(s)	189
GsuI	CTGGAG	2 cut(s)	46, 596
HaeIII	GGCC	2 cut(s)	479, 532
HapII	CCGG	2 cut(s)	476, 780
Hin1II	CATG	8 cut(s)	69, 92, 283, 289, 416, 434, 615, 724
HinfI	GANTC	3 cut(s)	17, 114, 163
HpaII	CCGG	2 cut(s)	476, 780
HphI	GGTGA	2 cut(s)	464, 662
Hpy166II	GTNNAC	2 cut(s)	418, 718
Hpy188I	TCNGA	4 cut(s)	36, 168, 333, 463
Hpy188III	TCNNGA	4 cut(s)	111, 131, 431, 659
Hpy8I	GTNNAC	2 cut(s)	418, 718
HpyCH4III	ACNGT	3 cut(s)	422, 583, 674
HpyCH4V	TGCA	3 cut(s)	188, 391, 418
HpyF10VI	GCNNNNNNNGC	3 cut(s)	409, 476, 766
HpyF3I	CTNAG	3 cut(s)	149, 330, 566
Hsp92II	CATG	8 cut(s)	69, 92, 283, 289, 416, 434, 615, 724
Ksp22I	TGATCA	1 cut(s)	36
Kzo9I	GATC	2 cut(s)	36, 333
LmnI	GCTCC	1 cut(s)	615
Lsp1109I	GCAGC	1 cut(s)	200
MaeI	CTAG	2 cut(s)	71, 215
MaeIII	GTNAC	2 cut(s)	599, 749
MalI	GATC	2 cut(s)	38, 335
MboI	GATC	2 cut(s)	36, 333
MboII	GAAGA	5 cut(s)	94, 262, 290, 784, 800
MhlI	GDGCHC	2 cut(s)	420, 534
MluCI	AATT	4 cut(s)	43, 275, 540, 697
MlyI	GAGTC	1 cut(s)	108
MnlI	CCTC	7 cut(s)	21, 129, 349, 362, 580, 629, 638
MslI	CAYNNNNRTG	4 cut(s)	93, 231, 284, 435
MspI	CCGG	2 cut(s)	476, 780
MspR9I	CCNGG	3 cut(s)	194, 313, 476
MvaI	CCWGG	2 cut(s)	194, 313
MwoI	GCNNNNNNNGC	3 cut(s)	409, 476, 766
NciI	CCSGG	1 cut(s)	476
NcoI	CCATGG	1 cut(s)	611
NdeII	GATC	2 cut(s)	36, 333
NlaIII	CATG	8 cut(s)	69, 92, 283, 289, 416, 434, 615, 724
NlaIV	GGNNCC	3 cut(s)	532, 533, 617
NmeAIII	GCCGAG	1 cut(s)	505
NspI	RCATGY	3 cut(s)	69, 289, 416
PaeI	GCATGC	1 cut(s)	289
PaeR7I	CTCGAG	1 cut(s)	353
PagI	TCATGA	1 cut(s)	430
PfeI	GAWTC	2 cut(s)	17, 163
PfoI	TCCNGGA	1 cut(s)	311
PkrI	GCNGC	1 cut(s)	190
PleI	GAGTC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	108
Psp6I	CCWGG	2 cut(s)	192, 311
PspEI	GGTNACC	1 cut(s)	599
PspGI	CCWGG	2 cut(s)	192, 311
PspN4I	GGNNCC	3 cut(s)	532, 533, 617
PspOMI	GGGCCC	1 cut(s)	530
PspPI	GGNCC	3 cut(s)	515, 530, 531
PspXI	VCTCGAGB	1 cut(s)	353
PstI	CTGCAG	1 cut(s)	190
RsaI	GTAC	3 cut(s)	158, 407, 564
RsaNI	GTAC	3 cut(s)	157, 406, 563
RseI	CAYNNNNRTG	4 cut(s)	93, 231, 284, 435
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	2 cut(s)	36, 333
Sau96I	GGNCC	3 cut(s)	515, 530, 531
SchI	GAGTC	1 cut(s)	108
ScrFI	CCNGG	3 cut(s)	194, 313, 476
SduI	GDGCHC	2 cut(s)	420, 534
SetI	ASST	7 cut(s)	32, 540, 637, 649, 731, 751, 762
SfcI	CTRYAG	1 cut(s)	186
Sfr274I	CTCGAG	1 cut(s)	353
SinI	GGWCC	1 cut(s)	515
SlaI	CTCGAG	1 cut(s)	353
SmiMI	CAYNNNNRTG	4 cut(s)	93, 231, 284, 435
SmlI	CTYRAG	2 cut(s)	131, 353
SmoI	CTYRAG	2 cut(s)	131, 353
SphI	GCATGC	1 cut(s)	289
Sse9I	AATT	4 cut(s)	43, 275, 540, 697
SsiI	CCGC	1 cut(s)	289
SspMI	CTAG	2 cut(s)	71, 215
StyD4I	CCNGG	3 cut(s)	192, 311, 474
StyI	CCWWGG	2 cut(s)	493, 611
TaaI	ACNGT	3 cut(s)	422, 583, 674
TaqI	TCGA	2 cut(s)	354, 585
TasI	AATT	4 cut(s)	43, 275, 540, 697
TatI	WGTACW	2 cut(s)	156, 405
TfiI	GAWTC	2 cut(s)	17, 163
TseI	GCWGC	1 cut(s)	188
TspDTI	ATGAA	5 cut(s)	105, 249, 268, 337, 693
VneI	GTGCAC	1 cut(s)	416
VpaK11BI	GGWCC	1 cut(s)	515
XapI	RAATTY	2 cut(s)	43, 275
XceI	RCATGY	3 cut(s)	69, 289, 416
XcmI	CCANNNNNNNNNTGG	1 cut(s)	309
XhoI	CTCGAG	1 cut(s)	353
XspI	CTAG	2 cut(s)	71, 215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.