Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0013121

Physical Location & Seq

Genomic Coordinates Reverse (-)

8343261 .. 8346007

Gene Structure 2747 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGTCCCCTGCAGCAAACTCGTCATCATCGAGATGGTGCCCTACCCCAGAGCAACTGATGCTCCTTGAAGAGATGTACAGAGCTGGAATTAGAACCCCAAATGCCTCTCAAATCCAACACATCACTGCCCAGCTCTCTTTCTATGGCAAGATTGAGGGCAAAAATGTATTTTACTGGTTCCAAAACCACAAGGCAAGGGACAGACAGAAACTTAGGAGAAAGCTTTGTAAGCAACTGCAGCAGCAGCAACTACTCTATCACCATCATAATAACCACGATTACCCTAACTACCACTATCATCAGCAGCTGAATCAGCAGAGCTTTCTTGGCTACCTTGAGTCCCCTCCTCCTGCATCTTCTGCTCTTCATCATCCGCAACTTTCTACTTGTCATCATCACGATAACTACTCATCAACTGGGTTTCTTCCTCCTCAGGTGGGAGTTGAAGATGCCTTGATAAACTACACCTGGAAGATGACGATCCCAGAGAAGGTGGAGATGGAGAAGTCCGTGATGAGTATGCACGGTCGTGATTGGATGATGAATGTAGGCCCACCATCCCCATGTTGCACTAGTTCAAGAAGTACTGCTACTACTTCTAGACCACCCCTCAAGACCCTTCAACTCTTCCCTACCACTGCAACTAATCTCAAAGAAGAATCCACGCCCTCCTACAATGCTCCCTCTTCCTCTATCCCCACAGAAAATTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008283 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009943 GO:0009947 GO:0009955 GO:0010468 GO:0010556 GO:0010865 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097353 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

238

Amino Acids

27.2

Weight (kDa)

8.75

Isoelectric Point (pI)

79.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	10 - 69	9.6e-14	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28610
fragaria_vesca	FvH4_3g34410
malus_domestica	MD03G1106400.v1.1 MD11G1118500.v1.1
prunus_persica	Prupe.6G088900_v2.0.a1 Prupe.6G088900_v2.0.a1
pyrus_communis	pycom03g08570 pycom11g09980
rosa_chinensis	RchiOBHm_Chr5g0062001
rosa_laevigata	RLG00000035525
rosa_multiflora	Rmu_sc0002296.1_g000004
rosa_roxburghii	Rroxscaffold_1G00018700
rosa_rugosa	Rorug05G0345400
rosa_samantha	Rh5AG406700 Rh5BG420100 Rh5CG444200 Rh5DG435500
rosa_wichuraiana	Rw5G038330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	36
AciI	CCGC	1 cut(s)	374
AclWI	GGATC	1 cut(s)	475
AfaI	GTAC	2 cut(s)	77, 586
AfiI	CCNNNNNNNGG	2 cut(s)	437, 490
AgsI	TTSAA	4 cut(s)	68, 446, 579, 623
AhlI	ACTAGT	1 cut(s)	572
AjnI	CCWGG	1 cut(s)	467
AleI	CACNNNNGTG	1 cut(s)	528
AluBI	AGCT	5 cut(s)	83, 133, 223, 307, 321
AluI	AGCT	5 cut(s)	83, 133, 223, 307, 321
AlwI	GGATC	1 cut(s)	475
AlwNI	CAGNNNCTG	1 cut(s)	307
AoxI	GGCC	1 cut(s)	550
ApeKI	GCWGC	5 cut(s)	11, 238, 241, 244, 304
AspS9I	GGNCC	1 cut(s)	551
AsuHPI	GGTGA	1 cut(s)	251
AxyI	CCTNAGG	1 cut(s)	432
BaeGI	GKGCMC	1 cut(s)	41
BanI	GGYRCC	1 cut(s)	36
BarI	GAAGNNNNNNTAC	2 cut(s)	574, 606
BbvI	GCAGC	5 cut(s)	23, 250, 253, 256, 316
BccI	CCATC	4 cut(s)	27, 270, 493, 565
BcgI	CGANNNNNNTGC	1 cut(s)	34
BciT130I	CCWGG	1 cut(s)	469
BcuI	ACTAGT	1 cut(s)	572
BfaI	CTAG	2 cut(s)	573, 600
BfmI	CTRYAG	2 cut(s)	9, 236
BisI	GCNGC	5 cut(s)	12, 239, 242, 245, 305
BlsI	GCNGC	5 cut(s)	13, 240, 243, 246, 306
BmcAI	AGTACT	1 cut(s)	586
Bme1390I	CCNGG	1 cut(s)	469
BmgT120I	GGNCC	1 cut(s)	551
BmiI	GGNNCC	2 cut(s)	38, 179
BmrFI	CCNGG	1 cut(s)	469
BmrI	ACTGGG	1 cut(s)	426
BmsI	GCATC	3 cut(s)	48, 362, 439
BmuI	ACTGGG	1 cut(s)	426
BpuEI	CTTGAG	2 cut(s)	356, 596
BsaBI	GATNNNNATC	1 cut(s)	479
BsaXI	ACNNNNNCTCC	2 cut(s)	45, 75
Bsc4I	CCNNNNNNNGG	2 cut(s)	437, 490
Bse1I	ACTGG	2 cut(s)	179, 421
Bse21I	CCTNAGG	1 cut(s)	432
Bse8I	GATNNNNATC	1 cut(s)	479
BseBI	CCWGG	1 cut(s)	469
BseGI	GGATG	3 cut(s)	370, 543, 557
BseJI	GATNNNNATC	1 cut(s)	479
BseLI	CCNNNNNNNGG	2 cut(s)	437, 490
BseMII	CTCAG	1 cut(s)	446
BseNI	ACTGG	2 cut(s)	179, 421
BseRI	GAGGAG	2 cut(s)	336, 420
BseSI	GKGCMC	1 cut(s)	41
BseXI	GCAGC	5 cut(s)	23, 250, 253, 256, 316
BseYI	CCCAGC	1 cut(s)	129
Bsh1285I	CGRYCG	1 cut(s)	529
BshFI	GGCC	1 cut(s)	552
BshNI	GGYRCC	1 cut(s)	36
BsiEI	CGRYCG	1 cut(s)	529
BslFI	GGGAC	2 cut(s)	212, 325
BslI	CCNNNNNNNGG	2 cut(s)	437, 490
BsmFI	GGGAC	2 cut(s)	212, 325
BsnI	GGCC	1 cut(s)	552
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp1407I	TGTACA	1 cut(s)	75
Bsp143I	GATC	1 cut(s)	480
BspACI	CCGC	1 cut(s)	374
BspANI	GGCC	1 cut(s)	552
BspCNI	CTCAG	1 cut(s)	445
BspLI	GGNNCC	2 cut(s)	38, 179
BspMAI	CTGCAG	2 cut(s)	13, 240
BspPI	GGATC	1 cut(s)	475
BspQI	GCTCTTC	1 cut(s)	369
BspT107I	GGYRCC	1 cut(s)	36
BsrGI	TGTACA	1 cut(s)	75
BsrI	ACTGG	2 cut(s)	179, 421
BssMI	GATC	1 cut(s)	480
Bst2UI	CCWGG	1 cut(s)	469
Bst4CI	ACNGT	1 cut(s)	527
Bst6I	CTCTTC	4 cut(s)	63, 369, 632, 691
BstAPI	GCANNNNNTGC	2 cut(s)	58, 359
BstAUI	TGTACA	1 cut(s)	75
BstDEI	CTNAG	2 cut(s)	212, 432
BstF5I	GGATG	3 cut(s)	370, 543, 557
BstKTI	GATC	1 cut(s)	483
BstMBI	GATC	1 cut(s)	480
BstMCI	CGRYCG	1 cut(s)	529
BstMWI	GCNNNNNNNGC	7 cut(s)	58, 229, 238, 244, 313, 327, 359
BstNI	CCWGG	1 cut(s)	469
BstSCI	CCNGG	1 cut(s)	467
BstSFI	CTRYAG	2 cut(s)	9, 236
BstSLI	GKGCMC	1 cut(s)	41
BstV1I	GCAGC	5 cut(s)	23, 250, 253, 256, 316
Bsu36I	CCTNAGG	1 cut(s)	432
BsuRI	GGCC	1 cut(s)	552
BtsCI	GGATG	3 cut(s)	370, 543, 557
BtsI	GCAGTG	2 cut(s)	123, 636
BtsIMutI	CAGTG	2 cut(s)	123, 636
CaiI	CAGNNNCTG	1 cut(s)	307
Cfr13I	GGNCC	1 cut(s)	551
Csp6I	GTAC	2 cut(s)	76, 585
CviAII	CATG	1 cut(s)	564
CviJI	RGCY	7 cut(s)	83, 133, 223, 307, 321, 330, 552
CviKI_1	RGCY	7 cut(s)	83, 133, 223, 307, 321, 330, 552
CviQI	GTAC	2 cut(s)	76, 585
DdeI	CTNAG	2 cut(s)	212, 432
DpnI	GATC	1 cut(s)	482
DpnII	GATC	1 cut(s)	480
Eam1104I	CTCTTC	4 cut(s)	63, 369, 632, 691
EarI	CTCTTC	4 cut(s)	63, 369, 632, 691
Eco81I	CCTNAGG	1 cut(s)	432
EcoRII	CCWGG	1 cut(s)	467
FaeI	CATG	1 cut(s)	567
FaiI	YATR	4 cut(s)	144, 267, 521, 565
FaqI	GGGAC	2 cut(s)	212, 325
FatI	CATG	1 cut(s)	563
Fnu4HI	GCNGC	5 cut(s)	12, 239, 242, 245, 305
FokI	GGATG	3 cut(s)	357, 544, 550
Fsp4HI	GCNGC	5 cut(s)	12, 239, 242, 245, 305
FspBI	CTAG	2 cut(s)	573, 600
GluI	GCNGC	5 cut(s)	12, 239, 242, 245, 305
GsaI	CCCAGC	1 cut(s)	133
HaeIII	GGCC	1 cut(s)	552
Hin1II	CATG	1 cut(s)	567
HindIII	AAGCTT	1 cut(s)	221
HinfI	GANTC	3 cut(s)	310, 338, 659
HphI	GGTGA	1 cut(s)	251
Hpy188III	TCNNGA	6 cut(s)	30, 398, 530, 579, 600, 613
HpyAV	CCTTC	2 cut(s)	484, 629
HpyCH4III	ACNGT	1 cut(s)	527
HpyCH4V	TGCA	6 cut(s)	11, 238, 353, 523, 570, 641
HpyF10VI	GCNNNNNNNGC	7 cut(s)	58, 229, 238, 244, 313, 327, 359
HpyF3I	CTNAG	2 cut(s)	212, 432
Hsp92II	CATG	1 cut(s)	567
Kzo9I	GATC	1 cut(s)	480
LguI	GCTCTTC	1 cut(s)	369
LmnI	GCTCC	2 cut(s)	66, 685
Lsp1109I	GCAGC	5 cut(s)	23, 250, 253, 256, 316
LweI	GCATC	3 cut(s)	48, 362, 439
MaeI	CTAG	2 cut(s)	573, 600
MalI	GATC	1 cut(s)	482
MboI	GATC	1 cut(s)	480
MboII	GAAGA	9 cut(s)	80, 348, 356, 416, 458, 484, 619, 668, 678
MhlI	GDGCHC	1 cut(s)	41
MluCI	AATT	2 cut(s)	87, 706
MlyI	GAGTC	1 cut(s)	347
MmeI	TCCRAC	1 cut(s)	139
MslI	CAYNNNNRTG	3 cut(s)	31, 528, 562
MspA1I	CMGCKG	1 cut(s)	307
MspR9I	CCNGG	1 cut(s)	469
MvaI	CCWGG	1 cut(s)	469
MwoI	GCNNNNNNNGC	7 cut(s)	58, 229, 238, 244, 313, 327, 359
NdeII	GATC	1 cut(s)	480
NlaIII	CATG	1 cut(s)	567
NlaIV	GGNNCC	2 cut(s)	38, 179
OliI	CACNNNNGTG	1 cut(s)	528
PciSI	GCTCTTC	1 cut(s)	369
PcsI	WCGNNNNNNNCGW	1 cut(s)	26
PfeI	GAWTC	2 cut(s)	310, 659
PkrI	GCNGC	5 cut(s)	13, 240, 243, 246, 306
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
Psp6I	CCWGG	1 cut(s)	467
PspFI	CCCAGC	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	467
PspN4I	GGNNCC	2 cut(s)	38, 179
PspPI	GGNCC	1 cut(s)	551
PstI	CTGCAG	2 cut(s)	13, 240
PstNI	CAGNNNCTG	1 cut(s)	307
PvuII	CAGCTG	1 cut(s)	307
RsaI	GTAC	2 cut(s)	77, 586
RsaNI	GTAC	2 cut(s)	76, 585
RseI	CAYNNNNRTG	3 cut(s)	31, 528, 562
SapI	GCTCTTC	1 cut(s)	369
SatI	GCNGC	5 cut(s)	12, 239, 242, 245, 305
Sau3AI	GATC	1 cut(s)	480
Sau96I	GGNCC	1 cut(s)	551
ScaI	AGTACT	1 cut(s)	586
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	1 cut(s)	469
SduI	GDGCHC	1 cut(s)	41
SetI	ASST	9 cut(s)	85, 135, 225, 309, 323, 336, 438, 470, 495
SfaNI	GCATC	3 cut(s)	48, 362, 439
SfcI	CTRYAG	2 cut(s)	9, 236
SmiMI	CAYNNNNRTG	3 cut(s)	31, 528, 562
SmlI	CTYRAG	2 cut(s)	335, 611
SmoI	CTYRAG	2 cut(s)	335, 611
SpeI	ACTAGT	1 cut(s)	572
Sse9I	AATT	2 cut(s)	87, 706
SsiI	CCGC	1 cut(s)	374
SspMI	CTAG	2 cut(s)	573, 600
StyD4I	CCNGG	1 cut(s)	467
TaaI	ACNGT	1 cut(s)	527
TaqI	TCGA	1 cut(s)	29
TasI	AATT	2 cut(s)	87, 706
TatI	WGTACW	2 cut(s)	75, 584
TfiI	GAWTC	2 cut(s)	310, 659
TscAI	CASTG	2 cut(s)	130, 643
TseI	GCWGC	5 cut(s)	11, 238, 241, 244, 304
TspDTI	ATGAA	2 cut(s)	356, 557
TspGWI	ACGGA	1 cut(s)	499
TspRI	CASTG	2 cut(s)	130, 643
XbaI	TCTAGA	1 cut(s)	599
XspI	CTAG	2 cut(s)	573, 600
ZrmI	AGTACT	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.