pycom11g12080

Protein of unknown function (DUF1635)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0011938
Physical Location & Seq
Forward (+)
10987182 .. 10988343
1162 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 804 bp
ATGAACAACCACCACAGCAGCAGCCCTCTTCTTAGCAGCTGGGCTTACTACTGCCAAGGAAAGAGCATGGAAGAGTTGAGGCAGTCCCTTTTGTACACAACCGTGGAGCTTGAGCAAACAAGAGCAACAGTTCAAGAGGAGCTAAGAAAAAGAGATGATCAGATATCCCATCTCAAAGATCTGCTCCAAAAAGCCATCAGAGAAAGAGATGAAGCCCAAGGCAAATGCCACAGACTCCTCCTTGAAAAACTCCTCCTCCAACAAACCCAGCAGCAGCAACACCAGCAAACCCAGCAGAATCAGCAAACAGCTCCTCTCTCTGGAATTTCAAGCATTGAAGACGAACCCAGAAGAGGAATCGACTCCAACAATGGCTTCTCCTCCTCAGATTGTGAAGAAAGCATTGTTTCTTCCCCAGTTATTGACCCAATTCAGCAAACCCAGCAGCTGCCACCAGGACCATCATTGCCACACCCATCAGTGGAGCTGCTGCCTGAGAAGCCGCTGCCTGAAAAGGGAAAGCTTTTGCAGGCTGTGATGAAAGCCGGTCCGTTGCTTCAAACCCTACTTCTGGCAGGCCCTCTGCCGCAGTGGAGACACCCGCCGCCACCGCTGGAGTCGTTTGAGATCCCCCCTGTGACCATTCCTTCACCACCACCTCAACCACCATTGCACACCCAGCTCCAGCACCAAGACTCCTCCTTGGCCAACGTTAGCTGCGGCATAGTCAACAGAAAGAGAGTCCTCTGTGAGGGCTCTGCCTCTCCTCCAGAGACCAAGTTCCAAAGGGTTGCCCTCCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1635

Protein Analysis

268

Amino Acids

29.87

Weight (kDa)

6.31

Isoelectric Point (pI)

69.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1635 PF07795 21 - 264 8.5e-96 Protein of unknown function (DUF1635)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011938)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28140 AT3G44940 AT5G22930
fragaria_vesca FvH4_3g30750 FvH4_3g30750
malus_domestica MD03G1126900.v1.1 MD11G1147500.v1.1
prunus_persica Prupe.6G112200_v2.0.a1
pyrus_communis pycom11g12080
rosa_chinensis RchiOBHm_Chr5g0056941
rosa_laevigata RLG00000035141
rosa_multiflora Rmu_sc0002035.1_g000007
rosa_roxburghii Rroxscaffold_1G00023250
rosa_rugosa Rorug05G0304500
rosa_samantha Rh5AG373900 Rh5BG384900 Rh5CG408200 Rh5DG398300
rosa_wichuraiana Rw5G035190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 503, 587, 602, 605, 611, 720, 799
AclI AACGTT 1 cut(s) 711
AclWI GGATC 1 cut(s) 622
AcoI YGGCCR 1 cut(s) 705
AcsI RAATTY 1 cut(s) 324
AfaI GTAC 1 cut(s) 95
AfiI CCNNNNNNNGG 6 cut(s) 320, 353, 481, 515, 571, 751
AgsI TTSAA 5 cut(s) 134, 245, 330, 338, 560
AjnI CCWGG 1 cut(s) 454
AjuI GAANNNNNNNTTGG 2 cut(s) 359, 391
AleI CACNNNNGTG 1 cut(s) 101
AluBI AGCT 9 cut(s) 39, 109, 142, 311, 448, 487, 523, 682, 717
AluI AGCT 9 cut(s) 39, 109, 142, 311, 448, 487, 523, 682, 717
Alw26I GTCTC 2 cut(s) 589, 767
AlwI GGATC 1 cut(s) 622
AlwNI CAGNNNCTG 1 cut(s) 448
AoxI GGCC 2 cut(s) 577, 705
ApoI RAATTY 1 cut(s) 324
AspS9I GGNCC 3 cut(s) 458, 548, 578
AsuHPI GGTGA 1 cut(s) 642
AvaII GGWCC 2 cut(s) 458, 548
BalI TGGCCA 1 cut(s) 707
BanII GRGCYC 1 cut(s) 758
BbsI GAAGAC 1 cut(s) 345
BccI CCATC 4 cut(s) 177, 203, 469, 484
BciT130I CCWGG 1 cut(s) 456
BclI TGATCA 1 cut(s) 157
BcoDI GTCTC 2 cut(s) 589, 767
BglII AGATCT 1 cut(s) 178
Bme1390I CCNGG 1 cut(s) 456
Bme18I GGWCC 2 cut(s) 458, 548
BmgT120I GGNCC 3 cut(s) 458, 548, 578
BmrFI CCNGG 1 cut(s) 456
BmrI ACTGGG 1 cut(s) 410
BmuI ACTGGG 1 cut(s) 410
BpiI GAAGAC 1 cut(s) 345
BpmI CTGGAG 3 cut(s) 635, 668, 753
BpuEI CTTGAG 1 cut(s) 131
BsaI GGTCTC 1 cut(s) 767
BsaJI CCNNGG 4 cut(s) 55, 102, 217, 702
BsaXI ACNNNNNCTCC 4 cut(s) 240, 270, 680, 710
Bsc4I CCNNNNNNNGG 6 cut(s) 320, 353, 481, 515, 571, 751
Bse118I RCCGGY 1 cut(s) 545
Bse1I ACTGG 1 cut(s) 416
Bse3DI GCAATG 2 cut(s) 464, 668
BseBI CCWGG 1 cut(s) 456
BseDI CCNNGG 4 cut(s) 55, 102, 217, 702
BseLI CCNNNNNNNGG 6 cut(s) 320, 353, 481, 515, 571, 751
BseMI GCAATG 2 cut(s) 464, 668
BseMII CTCAG 2 cut(s) 399, 486
BseNI ACTGG 1 cut(s) 416
BseRI GAGGAG 9 cut(s) 152, 227, 242, 245, 303, 370, 373, 688, 756
BseYI CCCAGC 5 cut(s) 39, 267, 291, 441, 678
BshFI GGCC 2 cut(s) 579, 707
BsiSI CCGG 1 cut(s) 546
BslFI GGGAC 1 cut(s) 70
BslI CCNNNNNNNGG 6 cut(s) 320, 353, 481, 515, 571, 751
BsmAI GTCTC 2 cut(s) 589, 767
BsmFI GGGAC 1 cut(s) 70
BsnI GGCC 2 cut(s) 579, 707
Bso31I GGTCTC 1 cut(s) 767
Bsp1286I GDGCHC 1 cut(s) 758
Bsp1407I TGTACA 1 cut(s) 93
Bsp143I GATC 3 cut(s) 157, 178, 627
BspACI CCGC 7 cut(s) 503, 587, 602, 605, 611, 720, 799
BspANI GGCC 2 cut(s) 579, 707
BspCNI CTCAG 2 cut(s) 398, 487
BspPI GGATC 1 cut(s) 622
BspTNI GGTCTC 1 cut(s) 767
BsrDI GCAATG 2 cut(s) 464, 668
BsrFI RCCGGY 1 cut(s) 545
BsrGI TGTACA 1 cut(s) 93
BsrI ACTGG 1 cut(s) 416
BssAI RCCGGY 1 cut(s) 545
BssECI CCNNGG 4 cut(s) 55, 102, 217, 702
BssMI GATC 3 cut(s) 157, 178, 627
BssT1I CCWWGG 3 cut(s) 55, 217, 702
Bst2UI CCWGG 1 cut(s) 456
Bst4CI ACNGT 2 cut(s) 103, 130
Bst6I CTCTTC 3 cut(s) 33, 66, 346
BstAUI TGTACA 1 cut(s) 93
BstC8I GCNNGC 2 cut(s) 531, 577
BstDEI CTNAG 4 cut(s) 32, 143, 385, 495
BstDSI CCRYGG 1 cut(s) 102
BstENI CCTNNNNNAGG 1 cut(s) 749
BstKTI GATC 3 cut(s) 160, 181, 630
BstMAI GTCTC 2 cut(s) 589, 767
BstMBI GATC 3 cut(s) 157, 178, 627
BstMWI GCNNNNNNNGC 7 cut(s) 283, 292, 301, 442, 499, 610, 679
BstNI CCWGG 1 cut(s) 456
BstSCI CCNGG 1 cut(s) 454
BstV2I GAAGAC 1 cut(s) 345
BstX2I RGATCY 2 cut(s) 178, 627
BstYI RGATCY 2 cut(s) 178, 627
BsuRI GGCC 2 cut(s) 579, 707
BtgI CCRYGG 1 cut(s) 102
BtsI GCAGTG 1 cut(s) 596
BtsIMutI CAGTG 2 cut(s) 486, 596
Cac8I GCNNGC 2 cut(s) 531, 577
CaiI CAGNNNCTG 1 cut(s) 448
Cfr10I RCCGGY 1 cut(s) 545
Cfr13I GGNCC 3 cut(s) 458, 548, 578
CpoI CGGWCCG 1 cut(s) 548
Csp6I GTAC 1 cut(s) 94
CspI CGGWCCG 1 cut(s) 548
CviAII CATG 1 cut(s) 67
CviQI GTAC 1 cut(s) 94
DdeI CTNAG 4 cut(s) 32, 143, 385, 495
DpnI GATC 3 cut(s) 159, 180, 629
DpnII GATC 3 cut(s) 157, 178, 627
EaeI YGGCCR 1 cut(s) 705
Eam1104I CTCTTC 3 cut(s) 33, 66, 346
EarI CTCTTC 3 cut(s) 33, 66, 346
Eco130I CCWWGG 3 cut(s) 55, 217, 702
Eco24I GRGCYC 1 cut(s) 758
Eco31I GGTCTC 1 cut(s) 767
Eco32I GATATC 1 cut(s) 165
Eco47I GGWCC 2 cut(s) 458, 548
EcoNI CCTNNNNNAGG 1 cut(s) 749
EcoO109I RGGNCCY 1 cut(s) 578
EcoRII CCWGG 1 cut(s) 454
EcoRV GATATC 1 cut(s) 165
EcoT14I CCWWGG 3 cut(s) 55, 217, 702
EcoT38I GRGCYC 1 cut(s) 758
ErhI CCWWGG 3 cut(s) 55, 217, 702
FaeI CATG 1 cut(s) 70
FaiI YATR 2 cut(s) 68, 725
FaqI GGGAC 1 cut(s) 70
FatI CATG 1 cut(s) 66
FauI CCCGC 1 cut(s) 609
FbaI TGATCA 1 cut(s) 157
FriOI GRGCYC 1 cut(s) 758
GsaI CCCAGC 5 cut(s) 43, 271, 295, 445, 682
GsuI CTGGAG 3 cut(s) 635, 668, 753
HaeIII GGCC 2 cut(s) 579, 707
HapII CCGG 1 cut(s) 546
Hin1II CATG 1 cut(s) 70
HincII GTYRAC 1 cut(s) 730
HindII GTYRAC 1 cut(s) 730
HindIII AAGCTT 1 cut(s) 521
HinfI GANTC 7 cut(s) 234, 298, 357, 362, 617, 695, 741
HpaII CCGG 1 cut(s) 546
HphI GGTGA 1 cut(s) 642
Hpy166II GTNNAC 2 cut(s) 96, 730
Hpy188I TCNGA 3 cut(s) 162, 200, 388
Hpy188III TCNNGA 3 cut(s) 134, 321, 770
Hpy8I GTNNAC 2 cut(s) 96, 730
HpyAV CCTTC 1 cut(s) 657
HpyCH4III ACNGT 2 cut(s) 103, 130
HpyCH4IV ACGT 1 cut(s) 711
HpyCH4V TGCA 2 cut(s) 529, 673
HpyF10VI GCNNNNNNNGC 7 cut(s) 283, 292, 301, 442, 499, 610, 679
HpyF3I CTNAG 4 cut(s) 32, 143, 385, 495
HpySE526I ACGT 1 cut(s) 711
Hsp92II CATG 1 cut(s) 70
Ksp22I TGATCA 1 cut(s) 157
Kzo9I GATC 3 cut(s) 157, 178, 627
LmnI GCTCC 6 cut(s) 106, 139, 189, 316, 484, 687
MaeII ACGT 1 cut(s) 711
MaeIII GTNAC 1 cut(s) 637
MalI GATC 3 cut(s) 159, 180, 629
MboI GATC 3 cut(s) 157, 178, 627
MboII GAAGA 6 cut(s) 20, 83, 350, 363, 402, 407
MflI RGATCY 2 cut(s) 178, 627
MhlI GDGCHC 1 cut(s) 758
MlsI TGGCCA 1 cut(s) 707
MluCI AATT 2 cut(s) 324, 429
MluNI TGGCCA 1 cut(s) 707
MlyI GAGTC 5 cut(s) 228, 356, 626, 689, 750
MmeI TCCRAC 2 cut(s) 283, 390
Mox20I TGGCCA 1 cut(s) 707
MscI TGGCCA 1 cut(s) 707
MslI CAYNNNNRTG 1 cut(s) 101
Msp20I TGGCCA 1 cut(s) 707
MspA1I CMGCKG 5 cut(s) 39, 448, 505, 613, 801
MspI CCGG 1 cut(s) 546
MspR9I CCNGG 1 cut(s) 456
MvaI CCWGG 1 cut(s) 456
MwoI GCNNNNNNNGC 7 cut(s) 283, 292, 301, 442, 499, 610, 679
NdeII GATC 3 cut(s) 157, 178, 627
NlaIII CATG 1 cut(s) 70
NmuCI GTSAC 1 cut(s) 637
OliI CACNNNNGTG 1 cut(s) 101
PfeI GAWTC 2 cut(s) 298, 357
PleI GAGTC 5 cut(s) 228, 356, 625, 689, 749
PpsI GAGTC 5 cut(s) 228, 356, 625, 689, 749
Psp1406I AACGTT 1 cut(s) 711
Psp6I CCWGG 1 cut(s) 454
PspFI CCCAGC 5 cut(s) 39, 267, 291, 441, 678
PspGI CCWGG 1 cut(s) 454
PspPI GGNCC 3 cut(s) 458, 548, 578
PstNI CAGNNNCTG 1 cut(s) 448
PsuI RGATCY 2 cut(s) 178, 627
PvuII CAGCTG 2 cut(s) 39, 448
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
RseI CAYNNNNRTG 1 cut(s) 101
Rsr2I CGGWCCG 1 cut(s) 548
RsrII CGGWCCG 1 cut(s) 548
Sau3AI GATC 3 cut(s) 157, 178, 627
Sau96I GGNCC 3 cut(s) 458, 548, 578
SchI GAGTC 5 cut(s) 228, 356, 626, 689, 750
ScrFI CCNGG 1 cut(s) 456
SduI GDGCHC 1 cut(s) 758
SinI GGWCC 2 cut(s) 458, 548
SmiMI CAYNNNNRTG 1 cut(s) 101
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 2 cut(s) 324, 429
SsiI CCGC 7 cut(s) 503, 587, 602, 605, 611, 720, 799
StyD4I CCNGG 1 cut(s) 454
StyI CCWWGG 3 cut(s) 55, 217, 702
TaaI ACNGT 2 cut(s) 103, 130
TaiI ACGT 1 cut(s) 714
TaqI TCGA 1 cut(s) 360
TasI AATT 2 cut(s) 324, 429
TatI WGTACW 1 cut(s) 93
TauI GCSGC 4 cut(s) 505, 589, 607, 723
TfiI GAWTC 2 cut(s) 298, 357
TscAI CASTG 2 cut(s) 486, 596
TseFI GTSAC 1 cut(s) 637
Tsp45I GTSAC 1 cut(s) 637
TspDTI ATGAA 3 cut(s) 17, 225, 554
TspGWI ACGGA 1 cut(s) 540
TspRI CASTG 2 cut(s) 486, 596
VpaK11BI GGWCC 2 cut(s) 458, 548
XagI CCTNNNNNAGG 1 cut(s) 749
XapI RAATTY 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.