Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0010740

Physical Location & Seq

Genomic Coordinates Reverse (-)

11134996 .. 11141463

Gene Structure 6468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2751 bp

ATGGCGAAGGGTACGGATTCGGAGGAGTTTGTGGTGATGTCTAATGTCCGGACGGGCCTGAAACGCGAGTTCGTGTTTGCGTTGAAGGCGCAGGCCGAAGTGTCTGGCTCTTTAGGGCGGACTCGTAGGGCCCAGAACGATGGCTGTAAGAGGTTGAAGACGGAGGAGCGCAACGGTGGTGATGGTGATGAGAAATTGGGGGGTGGGGAGATGGGGGAGGGGGAGATTGTGAAGGTTAAGGAGGATTTGGAGGAGGCTATGAGCGAAGAGGATGCAAAAAGCGATGTGGTGGACCTCACGAGCGAAGACGAGCCGAAATCCCATGTGGGTGAGCTTGTGCTGAGCGAGAGGGTTGGGGAAGACGAGTTGAAGCACTGTGTGTTGGAGATGGCAGTAGATGAGGAGCCCCAGACCGGTTGCATTGGAGATAATGAACCCAAAAAGCCTTTGATGGACGAAGAAGTCCCTGTTTTGATTGAGAACGCCAGCGTTAAGGTGGAAGATGAGGTGATTGGGAAGCCTCTGAGGAGGTTCACTCGGTCAGCATTGAAACTTGAGGCAGAAAAAATGCAGAATTTACCCGCAGAAGGTTATACCCAAGAGATAGATTCGGAGATTCAGAAAAGCCCTTTTGTTACTCCAATGAAACTTGATACGAAAATGCCGAAGATGGGGAGGAAGCTCAGTAAACTGAAAGAACTTCTTGATACCGGTATTCTCGAGGGGCAGCCAGTCAAATACCTTAGACGATCAAAGATAAGAGAATCTGGAGAAACTGGGCTTAGGGGAGTGATTATGGGCTCTTCTATATTGTGTCACTGTGATTCTTGCAAAGGAACTGAAGTTATTACACCTCCTGTGTTTGAGCTGCATGCGGGTAGTTCAAACAAACGTCCGCCGGAGTATATATATCTTGAGAATGGGAAGACCCTTCGGGATGTCATGACTGTATGCGAAAATTCTCCATTGGAAACTTTGGAAGAAGCTGTCCGACTTGTCATTGGTTGCTCATCTATAAGCAAATGTACGATCTGTCTCAATTGCAAAGAATCTATTGACAAAGACGGTACAAGGTCAGCAGTGATACTTTGTAGCTCATGCATGGAGTTAAAAGAGTCTGGAGCTAGGCTTGCTGTAGCTGCTAACCAGAGTGACGAATCACGAAAGCTGGTTACAGTACCAAATAGTCCTGATACCTTGTCAAAGTGTAGCTCACCATATCAAGTTACAGTACCAAAGCATCCTCATACTGTGCCAATGTGTAGCTCATCAAAGCCAGTTAAAGTTCAAAAGCATCCTCATAACGTGCCAGAGCGTCAGTCGTCAGAAAGTAAGAGTCAGGGAAGAGTAACCAAAAAGGATCTTCGGTTGCACAAGTTAGTTTTTGAGGAAGATGTCTTGCCGGATGGCACAGAAGTAGGCTATTTTTCTAAGGGAAAGAAATTGTTGGTTGGTTATAAAAAGGGTCCTGGCATTGTTTGTGGTTGCTGCAATAATGAGGTCAGCGCATCGACATTTGAAGCGCATGCTGGTTTTAAGTCACGTCGCAAGCCTTACCTGAACATTTACACATCTAATGGGGTATCTCTCCATGAATTGGCATTATCTCTATCTAGTCGTCGGAAGTGGTCTGCCAAGCATAATGATGACCTATGCTCCATCTGCAAAGCTGGAGGAGATCTCTTGTGCTGTGAGAATTGTCCAAGGGCTTTTCACAAAGAGTGCCTTTCTCTACCAATTGTCCCTGGCGATACTTGGTACTGTAAGAATTGCCAGACTATGTTTGAGAGAGAGAAATATGTGGAGCATAATGCCAATGCTGTTGCAGCTGGAAGGGTTGCAGGGGTCGATTCCATAGAACAAATAACCAACCGATGCATTCGTATTGTCACAACTTTCGAGGAGAAGCTTGGTGGATGTGCACTGTGCAGTAGCCATGAGTTCAGCGGCTCTGATTTTGGTCCCGGCACAGTTATTTTGTGTGATCAGTGTGAAAAGGAGTATCATGTAGGTTGTTTGAAGGATAAAGGAATTGAAGATTTGAAGGAATTACCACAAGACAAGTGGTTCTGTTGCTCAGATTGCCTCAGGGTTCATTCAGCTTTGCAGAAGTTGGTAGTTCATGGGGAACAGAAGCTTCCAGACTCCCTCCTGAATGTTGTAAGGAAGAAGCATAATGAGGAAGGTCCTGAGAGTGGAGCTAATCTTGATATAAAATGGAGGGTGCTTAGTGGGAAAATGTCTACTGATGATGAAAGTGTTCAGTTGCTTTCCAAGGCTCTTGAAATCTTCCATGATCGTTTTTCCCCAATAATTGATTCTACTTCACGCCAGGACTTCATCAAAGAAATGCTTTACGGGAGGACCATCCATACCCAAGATTTTGGTGGGATGTACTGTGCAATTATTACAGTAAATCAATTAGTCGTGTCAGCTGGAATGTTTCGTATCTATGGAGCCGAAGTGGCAGAGCTTCCTTTAGTAGCTACATGTGCTGATTTTGAAGGACAGGGTTACTTCCAGACGTTGTTTTCATGTATTGAGAGGCTTCTTGCATTTCTAAACGTGAAAAGCCTTGTGCTGCCAGCCGCTAGTGAGGCAGAATCAATATGGAAAAAGAGATTCGGTTTTGAGAAGTTAACCGAAAATGAGATACACGATTACAGGAAAAGATACCAAATGATGATCTTCCAAGGGACTAACATGCTGCAGAAGCCCGTCCCCAAGTGCCGAATTCTTAGGTCCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006355 GO:0006357 GO:0008134 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016581 GO:0017053 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0042826 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050808 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0070491 GO:0070603 GO:0071840 GO:0072553 GO:0080090 GO:0090545 GO:0090568 GO:0099172 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1904949 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jas PHD

Protein Analysis

917

Amino Acids

101.78

Weight (kDa)

6.16

Isoelectric Point (pI)

47.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TDBD	PF16135	263 - 316	2.5e-13	Tify domain binding domain
TDBD	PF16135	488 - 533	1.7e-13	Tify domain binding domain
PHD-1st_NSD	PF23011	548 - 592	2.2e-07	Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1
PHD	PF00628	552 - 591	3.7e-07	PHD-finger
IDM1_C	PF23209	768 - 906	8e-53	Increased DNA methylation 1, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27980
fragaria_vesca	FvH4_3g30510 FvH4_3g30510 FvH4_3g30510
malus_domestica	MD03G1127900.v1.1 MD11G1149500.v1.1
prunus_persica	Prupe.6G113900_v2.0.a1 Prupe.6G113900_v2.0.a1 Prupe.6G113900_v2.0.a1
pyrus_communis	pycom11g12240
rosa_chinensis	RchiOBHm_Chr5g0056471
rosa_laevigata	RLG00000035101
rosa_multiflora	Rmu_sc0002761.1_g000015
rosa_roxburghii	Rroxscaffold_1G00023850
rosa_rugosa	Rorug05G0300200
rosa_samantha	Rh5AG370700 Rh5BG382000 Rh5CG405100 Rh5DG394900
rosa_wichuraiana	Rw5G034720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1458
AasI	GACNNNNNNGTC	1 cut(s)	461
AccB7I	CCANNNNNTGG	1 cut(s)	1597
AccI	GTMKAC	1 cut(s)	2243
AccII	CGCG	1 cut(s)	66
AccIII	TCCGGA	1 cut(s)	48
AciI	CCGC	6 cut(s)	118, 582, 875, 896, 1947, 2589
AclWI	GGATC	1 cut(s)	1368
AcsI	RAATTY	3 cut(s)	574, 958, 2733
AcuI	CTGAAG	1 cut(s)	861
AdeI	CACNNNGTG	1 cut(s)	379
AfaI	GTAC	7 cut(s)	13, 1027, 1069, 1179, 1233, 1760, 2396
AfiI	CCNNNNNNNGG	5 cut(s)	413, 587, 671, 1597, 2195
AflIII	ACRYGT	1 cut(s)	2489
AgeI	ACCGGT	2 cut(s)	413, 710
AjiI	CACGTC	1 cut(s)	1544
AjnI	CCWGG	3 cut(s)	1468, 1744, 2331
AjuI	GAANNNNNNNTTGG	2 cut(s)	2302, 2334
Alw21I	GWGCWC	1 cut(s)	1924
Alw26I	GTCTC	1 cut(s)	1040
Alw44I	GTGCAC	1 cut(s)	1920
AlwI	GGATC	1 cut(s)	1368
Ama87I	CYCGRG	1 cut(s)	719
Aor13HI	TCCGGA	1 cut(s)	48
AoxI	GGCC	3 cut(s)	55, 93, 129
ApaI	GGGCCC	1 cut(s)	133
ApaLI	GTGCAC	1 cut(s)	1920
ApeKI	GCWGC	7 cut(s)	727, 868, 1139, 1488, 1826, 2581, 2707
ApoI	RAATTY	3 cut(s)	574, 958, 2733
AsiGI	ACCGGT	2 cut(s)	413, 710
Asp700I	GAANNNNTTC	1 cut(s)	2259
AspLEI	GCGC	4 cut(s)	91, 171, 1508, 1525
AspS9I	GGNCC	9 cut(s)	55, 129, 130, 292, 1466, 1961, 2186, 2364, 2742
AsuC2I	CCSGG	1 cut(s)	1965
AsuHPI	GGTGA	6 cut(s)	46, 191, 197, 341, 520, 1206
AvaI	CYCGRG	1 cut(s)	719
AvaII	GGWCC	6 cut(s)	292, 1466, 1961, 2186, 2364, 2742
AxyI	CCTNAGG	1 cut(s)	2087
BaeGI	GKGCMC	2 cut(s)	133, 1924
BanII	GRGCYC	3 cut(s)	133, 408, 803
BauI	CACGAG	1 cut(s)	298
BbsI	GAAGAC	4 cut(s)	164, 312, 366, 932
Bbv12I	GWGCWC	1 cut(s)	1924
BbvI	GCAGC	7 cut(s)	739, 855, 1126, 1475, 1838, 2568, 2694
BccI	CCATC	9 cut(s)	134, 176, 205, 382, 445, 664, 1400, 1667, 2375
BcgI	CGANNNNNNTGC	2 cut(s)	254, 288
BciT130I	CCWGG	3 cut(s)	1470, 1746, 2333
BclI	TGATCA	1 cut(s)	1984
BcnI	CCSGG	1 cut(s)	1965
BcoDI	GTCTC	1 cut(s)	1040
BfaI	CTAG	3 cut(s)	1125, 1614, 2592
BfmI	CTRYAG	2 cut(s)	1134, 2708
BglI	GCCNNNNNGGC	1 cut(s)	2465
BglII	AGATCT	1 cut(s)	1678
BisI	GCNGC	9 cut(s)	728, 869, 1140, 1489, 1827, 1948, 2582, 2589, 2708
BlpI	GCTNAGC	1 cut(s)	341
BlsI	GCNGC	9 cut(s)	729, 870, 1141, 1490, 1828, 1949, 2583, 2590, 2709
Bme1390I	CCNGG	4 cut(s)	1470, 1746, 1965, 2333
Bme18I	GGWCC	6 cut(s)	292, 1466, 1961, 2186, 2364, 2742
BmeT110I	CYCGRG	1 cut(s)	719
BmgBI	CACGTC	1 cut(s)	1544
BmgT120I	GGNCC	9 cut(s)	55, 129, 130, 292, 1466, 1961, 2186, 2364, 2742
BmiI	GGNNCC	6 cut(s)	131, 405, 1467, 1963, 2458, 2744
BmrFI	CCNGG	4 cut(s)	1470, 1746, 1965, 2333
BmrI	ACTGGG	1 cut(s)	786
BmsI	GCATC	5 cut(s)	262, 1249, 1303, 1517, 1865
BmuI	ACTGGG	1 cut(s)	786
BpiI	GAAGAC	4 cut(s)	164, 312, 366, 932
BplI	GAGNNNNNCTC	4 cut(s)	520, 552, 1665, 1697
BpmI	CTGGAG	3 cut(s)	789, 1140, 1692
Bpu10I	CCTNAGC	1 cut(s)	782
Bpu1102I	GCTNAGC	1 cut(s)	341
BpuEI	CTTGAG	2 cut(s)	575, 935
BpuMI	CCSGG	1 cut(s)	1965
BsaJI	CCNNGG	4 cut(s)	1703, 1744, 2274, 2692
BsaWI	WCCGGW	3 cut(s)	48, 413, 710
BsaXI	ACNNNNNCTCC	4 cut(s)	1640, 1670, 2448, 2478
Bsc4I	CCNNNNNNNGG	5 cut(s)	413, 587, 671, 1597, 2195
Bse118I	RCCGGY	2 cut(s)	413, 710
Bse1I	ACTGG	3 cut(s)	731, 781, 1277
Bse21I	CCTNAGG	1 cut(s)	2087
BseAI	TCCGGA	1 cut(s)	48
BseBI	CCWGG	3 cut(s)	1470, 1746, 2333
BseDI	CCNNGG	4 cut(s)	1703, 1744, 2274, 2692
BseGI	GGATG	8 cut(s)	277, 943, 1240, 1294, 1411, 1922, 2367, 2397
BseLI	CCNNNNNNNGG	5 cut(s)	413, 587, 671, 1597, 2195
BseMII	CTCAG	6 cut(s)	332, 515, 697, 2091, 2101, 2181
BseNI	ACTGG	3 cut(s)	731, 781, 1277
BseRI	GAGGAG	7 cut(s)	38, 179, 266, 416, 541, 1689, 1916
BseSI	GKGCMC	2 cut(s)	133, 1924
BseXI	GCAGC	7 cut(s)	739, 855, 1126, 1475, 1838, 2568, 2694
BsgI	GTGCAG	1 cut(s)	1948
Bsh1236I	CGCG	1 cut(s)	66
BshFI	GGCC	3 cut(s)	57, 95, 131
BshTI	ACCGGT	2 cut(s)	413, 710
BsiHKAI	GWGCWC	1 cut(s)	1924
BsiHKCI	CYCGRG	1 cut(s)	719
BsiSI	CCGG	6 cut(s)	49, 414, 711, 899, 1403, 1965
BslFI	GGGAC	6 cut(s)	449, 1727, 1947, 2705, 2710, 2728
BslI	CCNNNNNNNGG	5 cut(s)	413, 587, 671, 1597, 2195
BsmAI	GTCTC	1 cut(s)	1040
BsmFI	GGGAC	6 cut(s)	449, 1727, 1947, 2705, 2710, 2728
BsmI	GAATGC	1 cut(s)	1878
BsnI	GGCC	3 cut(s)	57, 95, 131
BsoBI	CYCGRG	1 cut(s)	719
Bsp120I	GGGCCC	1 cut(s)	129
Bsp1286I	GDGCHC	4 cut(s)	133, 408, 803, 1924
Bsp13I	TCCGGA	1 cut(s)	48
Bsp143I	GATC	7 cut(s)	749, 1029, 1360, 1678, 1984, 2296, 2685
Bsp1720I	GCTNAGC	1 cut(s)	341
BspACI	CCGC	6 cut(s)	118, 582, 875, 896, 1947, 2589
BspANI	GGCC	3 cut(s)	57, 95, 131
BspCNI	CTCAG	6 cut(s)	333, 516, 696, 2090, 2100, 2182
BspEI	TCCGGA	1 cut(s)	48
BspFNI	CGCG	1 cut(s)	66
BspHI	TCATGA	1 cut(s)	942
BspLI	GGNNCC	6 cut(s)	131, 405, 1467, 1963, 2458, 2744
BspMAI	CTGCAG	1 cut(s)	2712
BspPI	GGATC	1 cut(s)	1368
BspQI	GCTCTTC	1 cut(s)	808
BsrFI	RCCGGY	2 cut(s)	413, 710
BsrI	ACTGG	3 cut(s)	731, 781, 1277
BssAI	RCCGGY	2 cut(s)	413, 710
BssECI	CCNNGG	4 cut(s)	1703, 1744, 2274, 2692
BssMI	GATC	7 cut(s)	749, 1029, 1360, 1678, 1984, 2296, 2685
BssSI	CACGAG	1 cut(s)	298
BssT1I	CCWWGG	3 cut(s)	1703, 2274, 2692
Bst2BI	CACGAG	1 cut(s)	298
Bst2UI	CCWGG	3 cut(s)	1470, 1746, 2333
Bst6I	CTCTTC	3 cut(s)	261, 808, 1339
BstC8I	GCNNGC	7 cut(s)	93, 487, 873, 1131, 1527, 1550, 2586
BstF5I	GGATG	8 cut(s)	277, 943, 1240, 1294, 1411, 1922, 2367, 2397
BstFNI	CGCG	1 cut(s)	66
BstHHI	GCGC	4 cut(s)	91, 171, 1508, 1525
BstKTI	GATC	7 cut(s)	752, 1032, 1363, 1681, 1987, 2299, 2688
BstMAI	GTCTC	1 cut(s)	1040
BstMBI	GATC	7 cut(s)	749, 1029, 1360, 1678, 1984, 2296, 2685
BstNI	CCWGG	3 cut(s)	1470, 1746, 2333
BstNSI	RCATGY	4 cut(s)	875, 1529, 2493, 2707
BstSCI	CCNGG	4 cut(s)	1468, 1744, 1963, 2331
BstSFI	CTRYAG	2 cut(s)	1134, 2708
BstSLI	GKGCMC	2 cut(s)	133, 1924
BstUI	CGCG	1 cut(s)	66
BstV1I	GCAGC	7 cut(s)	739, 855, 1126, 1475, 1838, 2568, 2694
BstV2I	GAAGAC	4 cut(s)	164, 312, 366, 932
BstX2I	RGATCY	2 cut(s)	1360, 1678
BstXI	CCANNNNNNTGG	2 cut(s)	140, 2384
BstYI	RGATCY	2 cut(s)	1360, 1678
Bsu36I	CCTNAGG	1 cut(s)	2087
BsuRI	GGCC	3 cut(s)	57, 95, 131
BtgZI	GCGATG	1 cut(s)	297
BtrI	CACGTC	1 cut(s)	1544
BtsCI	GGATG	8 cut(s)	277, 943, 1240, 1294, 1411, 1922, 2367, 2397
BtsI	GCAGTG	1 cut(s)	1086
BtsIMutI	CAGTG	5 cut(s)	373, 817, 1086, 1922, 1994
Cac8I	GCNNGC	7 cut(s)	93, 487, 873, 1131, 1527, 1550, 2586
CciI	TCATGA	1 cut(s)	942
CfoI	GCGC	4 cut(s)	91, 171, 1508, 1525
Cfr10I	RCCGGY	2 cut(s)	413, 710
Cfr13I	GGNCC	9 cut(s)	55, 129, 130, 292, 1466, 1961, 2186, 2364, 2742
CseI	GACGC	1 cut(s)	1304
Csp6I	GTAC	7 cut(s)	12, 1026, 1068, 1178, 1232, 1759, 2395
CspAI	ACCGGT	2 cut(s)	413, 710
CspCI	CAANNNNNGTGG	2 cut(s)	2045, 2080
CviQI	GTAC	7 cut(s)	12, 1026, 1068, 1178, 1232, 1759, 2395
DpnI	GATC	7 cut(s)	751, 1031, 1362, 1680, 1986, 2298, 2687
DpnII	GATC	7 cut(s)	749, 1029, 1360, 1678, 1984, 2296, 2685
DraIII	CACNNNGTG	1 cut(s)	379
DrdI	GACNNNNNNGTC	1 cut(s)	461
DseDI	GACNNNNNNGTC	1 cut(s)	461
Eam1104I	CTCTTC	3 cut(s)	261, 808, 1339
EarI	CTCTTC	3 cut(s)	261, 808, 1339
EciI	GGCGGA	2 cut(s)	133, 885
Eco130I	CCWWGG	3 cut(s)	1703, 2274, 2692
Eco24I	GRGCYC	3 cut(s)	133, 408, 803
Eco47I	GGWCC	6 cut(s)	292, 1466, 1961, 2186, 2364, 2742
Eco57I	CTGAAG	1 cut(s)	861
Eco81I	CCTNAGG	1 cut(s)	2087
Eco88I	CYCGRG	1 cut(s)	719
EcoO109I	RGGNCCY	4 cut(s)	129, 1466, 2186, 2742
EcoRI	GAATTC	1 cut(s)	2733
EcoRII	CCWGG	3 cut(s)	1468, 1744, 2331
EcoT14I	CCWWGG	3 cut(s)	1703, 2274, 2692
EcoT22I	ATGCAT	2 cut(s)	1103, 1880
EcoT38I	GRGCYC	3 cut(s)	133, 408, 803
ErhI	CCWWGG	3 cut(s)	1703, 2274, 2692
FalI	AAGNNNNNCTT	6 cut(s)	687, 719, 1710, 1742, 2337, 2369
FaqI	GGGAC	6 cut(s)	449, 1727, 1947, 2705, 2710, 2728
FauI	CCCGC	2 cut(s)	589, 868
FbaI	TGATCA	1 cut(s)	1984
FblI	GTMKAC	1 cut(s)	2243
Fnu4HI	GCNGC	9 cut(s)	728, 869, 1140, 1489, 1827, 1948, 2582, 2589, 2708
FokI	GGATG	8 cut(s)	284, 950, 1227, 1281, 1418, 1929, 2354, 2404
FriOI	GRGCYC	3 cut(s)	133, 408, 803
Fsp4HI	GCNGC	9 cut(s)	728, 869, 1140, 1489, 1827, 1948, 2582, 2589, 2708
FspBI	CTAG	3 cut(s)	1125, 1614, 2592
GlaI	GCGC	4 cut(s)	90, 170, 1507, 1524
GluI	GCNGC	9 cut(s)	728, 869, 1140, 1489, 1827, 1948, 2582, 2589, 2708
GsuI	CTGGAG	3 cut(s)	789, 1140, 1692
HaeIII	GGCC	3 cut(s)	57, 95, 131
HapII	CCGG	6 cut(s)	49, 414, 711, 899, 1403, 1965
HgaI	GACGC	1 cut(s)	1304
HhaI	GCGC	4 cut(s)	91, 171, 1508, 1525
Hin6I	GCGC	4 cut(s)	89, 169, 1506, 1523
HinP1I	GCGC	4 cut(s)	89, 169, 1506, 1523
HincII	GTYRAC	1 cut(s)	2640
HindII	GTYRAC	1 cut(s)	2640
HindIII	AAGCTT	2 cut(s)	1907, 2135
HpaI	GTTAAC	1 cut(s)	2640
HpaII	CCGG	6 cut(s)	49, 414, 711, 899, 1403, 1965
HphI	GGTGA	6 cut(s)	46, 191, 197, 341, 520, 1206
Hpy166II	GTNNAC	6 cut(s)	292, 534, 689, 1922, 2244, 2640
Hpy188I	TCNGA	9 cut(s)	22, 525, 613, 621, 992, 1327, 1623, 1954, 2080
Hpy8I	GTNNAC	6 cut(s)	292, 534, 689, 1922, 2244, 2640
Hpy99I	CGWCG	2 cut(s)	1548, 1623
HpyAV	CCTTC	9 cut(s)	79, 226, 581, 941, 1827, 2014, 2038, 2177, 2498
HpyCH4IV	ACGT	5 cut(s)	892, 1305, 1543, 2525, 2565
HpySE526I	ACGT	5 cut(s)	892, 1305, 1543, 2525, 2565
HspAI	GCGC	4 cut(s)	89, 169, 1506, 1523
Kpn2I	TCCGGA	1 cut(s)	48
Ksp22I	TGATCA	1 cut(s)	1984
KspAI	GTTAAC	1 cut(s)	2640
Kzo9I	GATC	7 cut(s)	749, 1029, 1360, 1678, 1984, 2296, 2685
LguI	GCTCTTC	1 cut(s)	808
LmnI	GCTCC	7 cut(s)	166, 403, 1121, 1661, 1804, 2198, 2456
Lsp1109I	GCAGC	7 cut(s)	739, 855, 1126, 1475, 1838, 2568, 2694
LweI	GCATC	5 cut(s)	262, 1249, 1303, 1517, 1865
MaeI	CTAG	3 cut(s)	1125, 1614, 2592
MaeII	ACGT	5 cut(s)	892, 1305, 1543, 2525, 2565
MaeIII	GTNAC	9 cut(s)	634, 815, 1151, 1171, 1225, 1348, 1539, 1888, 2513
MalI	GATC	7 cut(s)	751, 1031, 1362, 1680, 1986, 2298, 2687
MboI	GATC	7 cut(s)	749, 1029, 1360, 1678, 1984, 2296, 2685
MfeI	CAATTG	2 cut(s)	1039, 1737
MflI	RGATCY	2 cut(s)	1360, 1678
MhlI	GDGCHC	4 cut(s)	133, 408, 803, 1924
MlyI	GAGTC	4 cut(s)	115, 1124, 1345, 2138
MmeI	TCCRAC	3 cut(s)	363, 1015, 1601
Mph1103I	ATGCAT	2 cut(s)	1103, 1880
MroI	TCCGGA	1 cut(s)	48
MroXI	GAANNNNTTC	1 cut(s)	2259
MseI	TTAA	6 cut(s)	237, 492, 1109, 1281, 1536, 2639
MslI	CAYNNNNRTG	2 cut(s)	327, 1644
MspA1I	CMGCKG	3 cut(s)	1829, 1947, 2435
MspI	CCGG	6 cut(s)	49, 414, 711, 899, 1403, 1965
MspR9I	CCNGG	4 cut(s)	1470, 1746, 1965, 2333
MunI	CAATTG	2 cut(s)	1039, 1737
Mva1269I	GAATGC	1 cut(s)	1878
MvaI	CCWGG	3 cut(s)	1470, 1746, 2333
MvnI	CGCG	1 cut(s)	66
NciI	CCSGG	1 cut(s)	1965
NdeII	GATC	7 cut(s)	749, 1029, 1360, 1678, 1984, 2296, 2685
NlaIV	GGNNCC	6 cut(s)	131, 405, 1467, 1963, 2458, 2744
NmuCI	GTSAC	4 cut(s)	815, 1151, 1539, 1888
NsiI	ATGCAT	2 cut(s)	1103, 1880
NspI	RCATGY	4 cut(s)	875, 1529, 2493, 2707
PaeI	GCATGC	2 cut(s)	875, 1529
PaeR7I	CTCGAG	1 cut(s)	719
PagI	TCATGA	1 cut(s)	942
PciI	ACATGT	1 cut(s)	2489
PciSI	GCTCTTC	1 cut(s)	808
PcsI	WCGNNNNNNNCGW	1 cut(s)	662
PctI	GAATGC	1 cut(s)	1878
PdmI	GAANNNNTTC	1 cut(s)	2259
PflMI	CCANNNNNTGG	1 cut(s)	1597
PinAI	ACCGGT	2 cut(s)	413, 710
PkrI	GCNGC	9 cut(s)	729, 870, 1141, 1490, 1828, 1949, 2583, 2590, 2709
PleI	GAGTC	4 cut(s)	115, 1123, 1344, 2138
PpsI	GAGTC	4 cut(s)	115, 1123, 1344, 2138
PpuMI	RGGWCCY	3 cut(s)	1466, 2186, 2742
PscI	ACATGT	1 cut(s)	2489
PsiI	TTATAA	1 cut(s)	1458
Psp5II	RGGWCCY	3 cut(s)	1466, 2186, 2742
Psp6I	CCWGG	3 cut(s)	1468, 1744, 2331
PspGI	CCWGG	3 cut(s)	1468, 1744, 2331
PspN4I	GGNNCC	6 cut(s)	131, 405, 1467, 1963, 2458, 2744
PspOMI	GGGCCC	1 cut(s)	129
PspPI	GGNCC	9 cut(s)	55, 129, 130, 292, 1466, 1961, 2186, 2364, 2742
PspPPI	RGGWCCY	3 cut(s)	1466, 2186, 2742
PstI	CTGCAG	1 cut(s)	2712
PsuI	RGATCY	2 cut(s)	1360, 1678
PvuII	CAGCTG	2 cut(s)	1829, 2435
RsaI	GTAC	7 cut(s)	13, 1027, 1069, 1179, 1233, 1760, 2396
RsaNI	GTAC	7 cut(s)	12, 1026, 1068, 1178, 1232, 1759, 2395
RseI	CAYNNNNRTG	2 cut(s)	327, 1644
SapI	GCTCTTC	1 cut(s)	808
SaqAI	TTAA	6 cut(s)	237, 492, 1109, 1281, 1536, 2639
SatI	GCNGC	9 cut(s)	728, 869, 1140, 1489, 1827, 1948, 2582, 2589, 2708
Sau3AI	GATC	7 cut(s)	749, 1029, 1360, 1678, 1984, 2296, 2685
Sau96I	GGNCC	9 cut(s)	55, 129, 130, 292, 1466, 1961, 2186, 2364, 2742
SchI	GAGTC	4 cut(s)	115, 1124, 1345, 2138
ScrFI	CCNGG	4 cut(s)	1470, 1746, 1965, 2333
SduI	GDGCHC	4 cut(s)	133, 408, 803, 1924
SfaNI	GCATC	5 cut(s)	262, 1249, 1303, 1517, 1865
SfcI	CTRYAG	2 cut(s)	1134, 2708
Sfr274I	CTCGAG	1 cut(s)	719
SinI	GGWCC	6 cut(s)	292, 1466, 1961, 2186, 2364, 2742
SlaI	CTCGAG	1 cut(s)	719
SmiMI	CAYNNNNRTG	2 cut(s)	327, 1644
SmlI	CTYRAG	3 cut(s)	554, 719, 914
SmoI	CTYRAG	3 cut(s)	554, 719, 914
SphI	GCATGC	2 cut(s)	875, 1529
SsiI	CCGC	6 cut(s)	118, 582, 875, 896, 1947, 2589
SspMI	CTAG	3 cut(s)	1125, 1614, 2592
StyD4I	CCNGG	4 cut(s)	1468, 1744, 1963, 2331
StyI	CCWWGG	3 cut(s)	1703, 2274, 2692
TaiI	ACGT	5 cut(s)	895, 1308, 1546, 2528, 2568
TaqI	TCGA	4 cut(s)	720, 1511, 1848, 1899
TaqII	GACCGA	1 cut(s)	528
TatI	WGTACW	1 cut(s)	2394
TauI	GCSGC	2 cut(s)	1950, 2591
Tru1I	TTAA	6 cut(s)	237, 492, 1109, 1281, 1536, 2639
Tru9I	TTAA	6 cut(s)	237, 492, 1109, 1281, 1536, 2639
TscAI	CASTG	5 cut(s)	380, 824, 1086, 1929, 1994
TseFI	GTSAC	4 cut(s)	815, 1151, 1539, 1888
TseI	GCWGC	7 cut(s)	727, 868, 1139, 1488, 1826, 2581, 2707
Tsp45I	GTSAC	4 cut(s)	815, 1151, 1539, 1888
TspDTI	ATGAA	8 cut(s)	447, 659, 1608, 2084, 2111, 2268, 2329, 2523
TspGWI	ACGGA	2 cut(s)	29, 176
TspRI	CASTG	5 cut(s)	380, 824, 1086, 1929, 1994
Van91I	CCANNNNNTGG	1 cut(s)	1597
VneI	GTGCAC	1 cut(s)	1920
VpaK11BI	GGWCC	6 cut(s)	292, 1466, 1961, 2186, 2364, 2742
XapI	RAATTY	3 cut(s)	574, 958, 2733
XceI	RCATGY	4 cut(s)	875, 1529, 2493, 2707
XcmI	CCANNNNNNNNNTGG	3 cut(s)	493, 2061, 2384
XhoI	CTCGAG	1 cut(s)	719
XmiI	GTMKAC	1 cut(s)	2243
XmnI	GAANNNNTTC	1 cut(s)	2259
XspI	CTAG	3 cut(s)	1125, 1614, 2592
Zsp2I	ATGCAT	2 cut(s)	1103, 1880

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.