pycom11g13790

rho GTPase-activating protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0010796
Physical Location & Seq
Forward (+)
13578420 .. 13583183
4764 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1287 bp
ATGACAGAGGTTCTCCATTCCCCTTCCCATTTTTGTTCCTCCCCAAGACCCAGCTCCTCTTCCCCTCTTCCTCCTTCCAATTCTTCATCCGTCTCCTTGTCGTGCGCACCCCCGTCTTCTTTGTCCGGCGCACCCCCGCGCAGCAAAGAGGACGACGATTGCGACTCTGCGGTGGCTGACTGTGAGGCGAAGGACCGTGACAAGCGCAGAAGGGAGCAGCTTTCTCTGTTGGCGTTGCTAGTCACCTTTTTCAGGAAATCTTTGATTCCGTGCAAGAGTGACAGGAGGCAGGTTTGCGCTATGGAGATCGGATGGCCAACCAATGTGCGGCACGTTGCCCATGTCACCTTTGATAGGTTCAATGGGTTCTTGGGTTTGCCCGTGGAGTTTGAACCTGAAGTGCCCAGTAGGCCTCCCAGTGCAAGTACAACTGTTTTTGGAGTTTCCACGGAGTCCATGCAGCTGTCATACGACTCTAGAGGTAATAGTGTGCCAACAATTCTCTTGCTTATGCAAGGACGGTTATATGCTGAAGGAGGCCTTCAGGCAGAAGGGATTTTCAGAATTAATGCCGAAAACAGTCAAGAGGAGCATGTAAGGGAGCAATTAAATAGGGGAGATGTACCAGAAGGCATCGATATACACAGTTTGGCAGGACTGATCAAGGCTTGGTTTAGGGAACTCCCAGCCGGGGTTCTGGACTCTCTATCGCCTGAGCAGGTAATGCAATGCCAGACTGAAGATGACTGTTCACAACTTGTGAGGCTTCTGCCGCCGACTGAAGCTTCTCTACTGGATTGGGCCATCAACCTTATGGCTGATGTTGTTCAACAGGAACATCTAAACAAGATGAATGCACGCAACATAGCCATGGTTTTTGCACCAAACATGACTCAGATGGCAGATCCTTTGACTGCATTGATGTATGCAGTCCAAGTGATGAACTTCCTCAAAACACTTATTTTGAAGACATTGCAAGAAAGAAAGGACTCTGCGGTAGAGCCTCCTGTGTGCAATGTAGAGCCCTCTGACGATAATGGACACCAGAGCCCTTCCCAGTCCTTCGAGGAAGATATTGGCAAATGTAACCAAGAGAAAGAGCAGTCAGTGATTACTGAAGAACCTCAATCTGAAAGTTCCTCCATCTCTAACCAAGTCAGTAACCTAACCAATAGAGAGGCTAGCAGTTTGGTGAGGCTGGTAAAGAAGCTAAATCCTGACGGCAGTGGGTGTTGCGAGAATGCAGTGCAAGATGACTACTTGGTTAATGAAATGGAAGCTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PBD RhoGAP

Protein Analysis

429

Amino Acids

47.08

Weight (kDa)

4.77

Isoelectric Point (pI)

64.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RhoGAP PF00620 179 - 299 7.8e-24 RhoGAP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 106
Acc36I ACCTGC 2 cut(s) 280, 709
AccII CGCG 1 cut(s) 139
AciI CCGC 5 cut(s) 137, 170, 328, 773, 995
AclWI GGATC 1 cut(s) 899
AcoI YGGCCR 1 cut(s) 314
AcuI CTGAAG 6 cut(s) 417, 527, 552, 759, 801, 1137
AfaI GTAC 2 cut(s) 427, 624
AfiI CCNNNNNNNGG 4 cut(s) 252, 327, 354, 691
AgsI TTSAA 4 cut(s) 361, 392, 830, 967
AluBI AGCT 6 cut(s) 54, 220, 463, 785, 1210, 1280
AluI AGCT 6 cut(s) 54, 220, 463, 785, 1210, 1280
Alw26I GTCTC 1 cut(s) 97
AlwI GGATC 1 cut(s) 899
AoxI GGCC 4 cut(s) 314, 410, 538, 801
ApeKI GCWGC 3 cut(s) 141, 217, 460
AseI ATTAAT 1 cut(s) 567
AspLEI GCGC 5 cut(s) 107, 131, 141, 207, 299
AspS9I GGNCC 2 cut(s) 193, 801
AsuC2I CCSGG 1 cut(s) 691
AsuHPI GGTGA 3 cut(s) 235, 337, 1204
AsuNHI GCTAGC 1 cut(s) 1181
AvaII GGWCC 1 cut(s) 193
BaeGI GKGCMC 1 cut(s) 405
BalI TGGCCA 1 cut(s) 316
BanII GRGCYC 2 cut(s) 1026, 1052
BarI GAAGNNNNNNTAC 2 cut(s) 774, 806
BbsI GAAGAC 2 cut(s) 108, 974
BbvI GCAGC 3 cut(s) 153, 229, 472
BccI CCATC 4 cut(s) 306, 812, 892, 1151
BceAI ACGGC 1 cut(s) 1237
BclI TGATCA 1 cut(s) 660
BcnI CCSGG 1 cut(s) 691
BcoDI GTCTC 1 cut(s) 97
BfaI CTAG 3 cut(s) 239, 477, 1182
BfuAI ACCTGC 2 cut(s) 280, 709
BglI GCCNNNNNGGC 1 cut(s) 409
BisI GCNGC 5 cut(s) 142, 218, 329, 461, 773
BlsI GCNGC 5 cut(s) 143, 219, 330, 462, 774
Bme1390I CCNGG 1 cut(s) 691
Bme18I GGWCC 1 cut(s) 193
BmgT120I GGNCC 2 cut(s) 193, 801
BmrFI CCNGG 1 cut(s) 691
BmrI ACTGGG 3 cut(s) 399, 411, 1051
BmsI GCATC 1 cut(s) 642
BmtI GCTAGC 1 cut(s) 1185
BmuI ACTGGG 3 cut(s) 399, 411, 1051
BpiI GAAGAC 2 cut(s) 108, 974
Bpu10I CCTNAGC 1 cut(s) 714
BpuMI CCSGG 1 cut(s) 691
Bsa29I ATCGAT 1 cut(s) 636
BsaJI CCNNGG 4 cut(s) 381, 447, 690, 870
Bsc4I CCNNNNNNNGG 4 cut(s) 252, 327, 354, 691
Bse1I ACTGG 4 cut(s) 405, 417, 798, 1057
Bse3DI GCAATG 3 cut(s) 734, 971, 1021
BseCI ATCGAT 1 cut(s) 636
BseDI CCNNGG 4 cut(s) 381, 447, 690, 870
BseGI GGATG 2 cut(s) 86, 317
BseLI CCNNNNNNNGG 4 cut(s) 252, 327, 354, 691
BseMI GCAATG 3 cut(s) 734, 971, 1021
BseMII CTCAG 2 cut(s) 705, 908
BseNI ACTGG 4 cut(s) 405, 417, 798, 1057
BseRI GAGGAG 2 cut(s) 46, 602
BseSI GKGCMC 1 cut(s) 405
BseXI GCAGC 3 cut(s) 153, 229, 472
BseYI CCCAGC 2 cut(s) 50, 685
Bsh1236I CGCG 1 cut(s) 139
BshFI GGCC 4 cut(s) 316, 412, 540, 803
BshVI ATCGAT 1 cut(s) 636
BsiSI CCGG 2 cut(s) 126, 690
BslI CCNNNNNNNGG 4 cut(s) 252, 327, 354, 691
BsmAI GTCTC 1 cut(s) 97
BsmBI CGTCTC 1 cut(s) 97
BsmI GAATGC 2 cut(s) 859, 1246
BsnI GGCC 4 cut(s) 316, 412, 540, 803
Bsp1286I GDGCHC 3 cut(s) 405, 1026, 1052
Bsp143I GATC 3 cut(s) 306, 660, 904
Bsp19I CCATGG 1 cut(s) 870
BspACI CCGC 5 cut(s) 137, 170, 328, 773, 995
BspANI GGCC 4 cut(s) 316, 412, 540, 803
BspCNI CTCAG 2 cut(s) 706, 907
BspDI ATCGAT 1 cut(s) 636
BspFNI CGCG 1 cut(s) 139
BspMI ACCTGC 2 cut(s) 280, 709
BspOI GCTAGC 1 cut(s) 1185
BspPI GGATC 1 cut(s) 899
BsrDI GCAATG 3 cut(s) 734, 971, 1021
BsrI ACTGG 4 cut(s) 405, 417, 798, 1057
BssECI CCNNGG 4 cut(s) 381, 447, 690, 870
BssMI GATC 3 cut(s) 306, 660, 904
BssT1I CCWWGG 1 cut(s) 870
Bst4CI ACNGT 7 cut(s) 182, 197, 433, 522, 581, 647, 749
Bst6I CTCTTC 2 cut(s) 64, 72
BstAPI GCANNNNNTGC 1 cut(s) 724
BstC8I GCNNGC 3 cut(s) 859, 1183, 1282
BstDEI CTNAG 2 cut(s) 714, 894
BstDSI CCRYGG 3 cut(s) 381, 447, 870
BstENI CCTNNNNNAGG 2 cut(s) 250, 352
BstF5I GGATG 2 cut(s) 86, 317
BstFNI CGCG 1 cut(s) 139
BstHHI GCGC 5 cut(s) 107, 131, 141, 207, 299
BstKTI GATC 3 cut(s) 309, 663, 907
BstMAI GTCTC 1 cut(s) 97
BstMBI GATC 3 cut(s) 306, 660, 904
BstMWI GCNNNNNNNGC 3 cut(s) 409, 724, 772
BstNSI RCATGY 1 cut(s) 596
BstSCI CCNGG 1 cut(s) 689
BstSLI GKGCMC 1 cut(s) 405
BstUI CGCG 1 cut(s) 139
BstV1I GCAGC 3 cut(s) 153, 229, 472
BstV2I GAAGAC 2 cut(s) 108, 974
BstX2I RGATCY 1 cut(s) 904
BstYI RGATCY 1 cut(s) 904
Bsu15I ATCGAT 1 cut(s) 636
BsuRI GGCC 4 cut(s) 316, 412, 540, 803
BsuTUI ATCGAT 1 cut(s) 636
BtgI CCRYGG 3 cut(s) 381, 447, 870
BtsCI GGATG 2 cut(s) 86, 317
BtsI GCAGTG 2 cut(s) 1231, 1251
BtsIMutI CAGTG 4 cut(s) 424, 1113, 1231, 1251
BveI ACCTGC 2 cut(s) 280, 709
Cac8I GCNNGC 3 cut(s) 859, 1183, 1282
CfoI GCGC 5 cut(s) 107, 131, 141, 207, 299
Cfr13I GGNCC 2 cut(s) 193, 801
ClaI ATCGAT 1 cut(s) 636
Csp6I GTAC 2 cut(s) 426, 623
CviAII CATG 5 cut(s) 341, 457, 593, 871, 889
CviQI GTAC 2 cut(s) 426, 623
DdeI CTNAG 2 cut(s) 714, 894
DpnI GATC 3 cut(s) 308, 662, 906
DpnII GATC 3 cut(s) 306, 660, 904
EaeI YGGCCR 1 cut(s) 314
Eam1104I CTCTTC 2 cut(s) 64, 72
EarI CTCTTC 2 cut(s) 64, 72
Eco130I CCWWGG 1 cut(s) 870
Eco147I AGGCCT 2 cut(s) 412, 540
Eco24I GRGCYC 2 cut(s) 1026, 1052
Eco47I GGWCC 1 cut(s) 193
Eco57I CTGAAG 6 cut(s) 417, 527, 552, 759, 801, 1137
EcoNI CCTNNNNNAGG 2 cut(s) 250, 352
EcoT14I CCWWGG 1 cut(s) 870
EcoT38I GRGCYC 2 cut(s) 1026, 1052
ErhI CCWWGG 1 cut(s) 870
Esp3I CGTCTC 1 cut(s) 97
FaeI CATG 5 cut(s) 344, 460, 596, 874, 892
FalI AAGNNNNNCTT 2 cut(s) 525, 557
FatI CATG 5 cut(s) 340, 456, 592, 870, 888
FauI CCCGC 1 cut(s) 144
FbaI TGATCA 1 cut(s) 660
Fnu4HI GCNGC 5 cut(s) 142, 218, 329, 461, 773
FokI GGATG 2 cut(s) 73, 324
FriOI GRGCYC 2 cut(s) 1026, 1052
Fsp4HI GCNGC 5 cut(s) 142, 218, 329, 461, 773
FspAI RTGCGCAY 1 cut(s) 106
FspBI CTAG 3 cut(s) 239, 477, 1182
FspI TGCGCA 1 cut(s) 106
GlaI GCGC 5 cut(s) 106, 130, 140, 206, 298
GluI GCNGC 5 cut(s) 142, 218, 329, 461, 773
GsaI CCCAGC 2 cut(s) 54, 689
HaeIII GGCC 4 cut(s) 316, 412, 540, 803
HapII CCGG 2 cut(s) 126, 690
HhaI GCGC 5 cut(s) 107, 131, 141, 207, 299
Hin1II CATG 5 cut(s) 344, 460, 596, 874, 892
Hin6I GCGC 5 cut(s) 105, 129, 139, 205, 297
HinP1I GCGC 5 cut(s) 105, 129, 139, 205, 297
HindIII AAGCTT 1 cut(s) 783
HinfI GANTC 7 cut(s) 164, 265, 452, 473, 701, 892, 989
HpaII CCGG 2 cut(s) 126, 690
HphI GGTGA 3 cut(s) 235, 337, 1204
Hpy166II GTNNAC 1 cut(s) 752
Hpy188I TCNGA 5 cut(s) 311, 563, 897, 1030, 1132
Hpy188III TCNNGA 5 cut(s) 253, 477, 584, 698, 1217
Hpy8I GTNNAC 1 cut(s) 752
Hpy99I CGWCG 1 cut(s) 158
HpyCH4III ACNGT 7 cut(s) 182, 197, 433, 522, 581, 647, 749
HpyCH4IV ACGT 1 cut(s) 333
HpyF10VI GCNNNNNNNGC 3 cut(s) 409, 724, 772
HpyF3I CTNAG 2 cut(s) 714, 894
HpySE526I ACGT 1 cut(s) 333
Hsp92II CATG 5 cut(s) 344, 460, 596, 874, 892
HspAI GCGC 5 cut(s) 105, 129, 139, 205, 297
Ksp22I TGATCA 1 cut(s) 660
Kzo9I GATC 3 cut(s) 306, 660, 904
LmnI GCTCC 4 cut(s) 59, 214, 589, 601
Lsp1109I GCAGC 3 cut(s) 153, 229, 472
LweI GCATC 1 cut(s) 642
MaeI CTAG 3 cut(s) 239, 477, 1182
MaeII ACGT 1 cut(s) 333
MaeIII GTNAC 6 cut(s) 197, 241, 278, 343, 1085, 1160
MalI GATC 3 cut(s) 308, 662, 906
MboI GATC 3 cut(s) 306, 660, 904
MboII GAAGA 8 cut(s) 51, 59, 75, 108, 752, 979, 1082, 1130
MflI RGATCY 1 cut(s) 904
MhlI GDGCHC 3 cut(s) 405, 1026, 1052
MlsI TGGCCA 1 cut(s) 316
MluCI AATT 4 cut(s) 79, 498, 564, 605
MluNI TGGCCA 1 cut(s) 316
MlyI GAGTC 6 cut(s) 158, 461, 467, 695, 886, 983
Mox20I TGGCCA 1 cut(s) 316
MscI TGGCCA 1 cut(s) 316
MseI TTAA 3 cut(s) 567, 608, 1266
MslI CAYNNNNRTG 1 cut(s) 869
Msp20I TGGCCA 1 cut(s) 316
MspA1I CMGCKG 1 cut(s) 463
MspI CCGG 2 cut(s) 126, 690
MspR9I CCNGG 1 cut(s) 691
Mva1269I GAATGC 2 cut(s) 859, 1246
MvnI CGCG 1 cut(s) 139
MwoI GCNNNNNNNGC 3 cut(s) 409, 724, 772
NciI CCSGG 1 cut(s) 691
NcoI CCATGG 1 cut(s) 870
NdeII GATC 3 cut(s) 306, 660, 904
NheI GCTAGC 1 cut(s) 1181
NlaIII CATG 5 cut(s) 344, 460, 596, 874, 892
NmuCI GTSAC 4 cut(s) 197, 241, 278, 343
NsbI TGCGCA 1 cut(s) 106
NspI RCATGY 1 cut(s) 596
PceI AGGCCT 2 cut(s) 412, 540
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PctI GAATGC 2 cut(s) 859, 1246
PfeI GAWTC 1 cut(s) 265
PkrI GCNGC 5 cut(s) 143, 219, 330, 462, 774
PleI GAGTC 6 cut(s) 158, 460, 467, 695, 886, 983
PpsI GAGTC 6 cut(s) 158, 460, 467, 695, 886, 983
PshBI ATTAAT 1 cut(s) 567
PspFI CCCAGC 2 cut(s) 50, 685
PspPI GGNCC 2 cut(s) 193, 801
PsuI RGATCY 1 cut(s) 904
PvuII CAGCTG 1 cut(s) 463
RsaI GTAC 2 cut(s) 427, 624
RsaNI GTAC 2 cut(s) 426, 623
RseI CAYNNNNRTG 1 cut(s) 869
SaqAI TTAA 3 cut(s) 567, 608, 1266
SatI GCNGC 5 cut(s) 142, 218, 329, 461, 773
Sau3AI GATC 3 cut(s) 306, 660, 904
Sau96I GGNCC 2 cut(s) 193, 801
SchI GAGTC 6 cut(s) 158, 461, 467, 695, 886, 983
ScrFI CCNGG 1 cut(s) 691
SduI GDGCHC 3 cut(s) 405, 1026, 1052
SfaNI GCATC 1 cut(s) 642
SinI GGWCC 1 cut(s) 193
SmiMI CAYNNNNRTG 1 cut(s) 869
Sse9I AATT 4 cut(s) 79, 498, 564, 605
SseBI AGGCCT 2 cut(s) 412, 540
SsiI CCGC 5 cut(s) 137, 170, 328, 773, 995
SspMI CTAG 3 cut(s) 239, 477, 1182
StuI AGGCCT 2 cut(s) 412, 540
StyD4I CCNGG 1 cut(s) 689
StyI CCWWGG 1 cut(s) 870
TaaI ACNGT 7 cut(s) 182, 197, 433, 522, 581, 647, 749
TaiI ACGT 1 cut(s) 336
TaqI TCGA 2 cut(s) 636, 1065
TasI AATT 4 cut(s) 79, 498, 564, 605
TatI WGTACW 1 cut(s) 425
TauI GCSGC 2 cut(s) 331, 775
TfiI GAWTC 1 cut(s) 265
Tru1I TTAA 3 cut(s) 567, 608, 1266
Tru9I TTAA 3 cut(s) 567, 608, 1266
TscAI CASTG 4 cut(s) 424, 1113, 1231, 1251
TseFI GTSAC 4 cut(s) 197, 241, 278, 343
TseI GCWGC 3 cut(s) 141, 217, 460
Tsp45I GTSAC 4 cut(s) 197, 241, 278, 343
TspDTI ATGAA 4 cut(s) 75, 866, 956, 1284
TspGWI ACGGA 3 cut(s) 79, 258, 464
TspRI CASTG 4 cut(s) 424, 1113, 1231, 1251
VpaK11BI GGWCC 1 cut(s) 193
VspI ATTAAT 1 cut(s) 567
XagI CCTNNNNNAGG 2 cut(s) 250, 352
XbaI TCTAGA 1 cut(s) 476
XceI RCATGY 1 cut(s) 596
XcmI CCANNNNNNNNNTGG 1 cut(s) 811
XspI CTAG 3 cut(s) 239, 477, 1182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.