pycom11g13800

Protein FANTASTIC FOUR 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0011240
Physical Location & Seq
Forward (+)
13608896 .. 13609665
770 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 717 bp
ATGTCATCCTCCTCGTCCTCATTGACATCTTCGGACGTAGAATTTGACCCTAAAACCAAGTTTGGGAAAAATGAGGAGGAGATGAAGAAGATGAATGGCCAGAAGAGCCCCTCAAAGGAGTCCCTTTCGAGCAATTACAGTAGGTCTCAGTCTCACAAAAGCAGTGATAGCTTTTCATCAATGAATTCGGAGAGCTTGCAGTTATGCACGGAGGGACTTGGATTCGAAAGCTCGGACGAGGATGAAGAAAACATTACAGTTCAAGAGGAGAAGATTAGTTTTACAAAGCAATATTTTCCAGTTTCAGAAATTAGTTATAATAATAATTGTTGTGGTGGTGAATTAGGGTTTAGGAGGTCAAGGAGTACTAGTGTTGGGGGATTCCCTCCGCCGATATCCTGCATAAGCAACAGCGGGAAGCCTTGGGTTTGCTTCAAGTCTTACAGGCATAATGGCAGGTTTGTCCTCAAAGAAATCAGAATCCCCACCCAAGAGTTCTTGCATGCTCACAGGGAAGATGGGCGCCTCAAGCTGCACTTCGTCATGCCCGACAACGAGATTCTAGGTGAGGAAGACGACGACGATGATGATCTATCCAACGAGATTGAAGAACAAGAAGAAGAAATTGAAGAAGAAGAAGAAGATCATCCAGATGCAGATGCCGCTCGTGATTCAATAAATAAAGAAGGAAATGATAAGGCAAAGACAAATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

239

Amino Acids

26.87

Weight (kDa)

4.58

Isoelectric Point (pI)

81.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 128 - 180 2.8e-23 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22390
fragaria_vesca FvH4_3g25120
malus_domestica MD03G1147600.v1.1 MD11G1166300.v1.1
prunus_persica Prupe.6G132300_v2.0.a1
pyrus_communis pycom03g10180 pycom11g13800
rosa_chinensis RchiOBHm_Chr5g0045661 RchiOBHm_Chr5g0046341
rosa_laevigata RLG00000034369
rosa_multiflora Rmu_sc0001035.1_g000082
rosa_roxburghii Rroxscaffold_1G00035560
rosa_rugosa Rorug05G0224100
rosa_samantha Rh5AG305000 Rh5BG313700 Rh5CG340000 Rh5DG324400
rosa_wichuraiana Rw0G020570 Rw0G021550 Rw5G028350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 318
Acc36I ACCTGC 1 cut(s) 447
AccB1I GGYRCC 1 cut(s) 522
AccBSI CCGCTC 1 cut(s) 665
AciI CCGC 3 cut(s) 389, 414, 663
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 2 cut(s) 41, 184
AcyI GRCGYC 1 cut(s) 523
AfaI GTAC 1 cut(s) 367
AfiI CCNNNNNNNGG 2 cut(s) 63, 115
AgsI TTSAA 5 cut(s) 263, 436, 608, 629, 675
AhlI ACTAGT 1 cut(s) 368
AluBI AGCT 4 cut(s) 171, 195, 231, 532
AluI AGCT 4 cut(s) 171, 195, 231, 532
Alw26I GTCTC 2 cut(s) 150, 156
AoxI GGCC 1 cut(s) 97
ApeKI GCWGC 1 cut(s) 532
ApoI RAATTY 2 cut(s) 41, 184
ArsI GACNNNNNNTTYG 2 cut(s) 26, 58
AspLEI GCGC 1 cut(s) 525
AsuHPI GGTGA 2 cut(s) 350, 578
AsuII TTCGAA 1 cut(s) 225
BalI TGGCCA 1 cut(s) 99
BanI GGYRCC 1 cut(s) 522
BanII GRGCYC 1 cut(s) 110
BauI CACGAG 1 cut(s) 666
BbsI GAAGAC 1 cut(s) 579
BbvI GCAGC 1 cut(s) 519
BccI CCATC 1 cut(s) 512
BcoDI GTCTC 2 cut(s) 150, 156
BcuI ACTAGT 1 cut(s) 368
BfaI CTAG 2 cut(s) 369, 563
BfoI RGCGCY 1 cut(s) 526
BfuAI ACCTGC 1 cut(s) 447
BisI GCNGC 2 cut(s) 533, 663
BlsI GCNGC 2 cut(s) 534, 664
BmcAI AGTACT 1 cut(s) 367
BmiI GGNNCC 1 cut(s) 524
BmsI GCATC 2 cut(s) 643, 649
BpiI GAAGAC 1 cut(s) 579
Bpu14I TTCGAA 1 cut(s) 225
BpuEI CTTGAG 1 cut(s) 512
BsaBI GATNNNNATC 1 cut(s) 588
BsaHI GRCGYC 1 cut(s) 523
BsaI GGTCTC 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 422
BsaXI ACNNNNNCTCC 2 cut(s) 355, 385
Bsc4I CCNNNNNNNGG 2 cut(s) 63, 115
Bse1I ACTGG 1 cut(s) 299
Bse8I GATNNNNATC 1 cut(s) 588
BseDI CCNNGG 1 cut(s) 422
BseGI GGATG 3 cut(s) 5, 247, 646
BseJI GATNNNNATC 1 cut(s) 588
BseLI CCNNNNNNNGG 2 cut(s) 63, 115
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 1 cut(s) 299
BseRI GAGGAG 3 cut(s) 89, 92, 281
BseXI GCAGC 1 cut(s) 519
BsgI GTGCAG 1 cut(s) 518
BshFI GGCC 1 cut(s) 99
BshNI GGYRCC 1 cut(s) 522
BslFI GGGAC 2 cut(s) 106, 228
BslI CCNNNNNNNGG 2 cut(s) 63, 115
BsmAI GTCTC 2 cut(s) 150, 156
BsmFI GGGAC 2 cut(s) 106, 228
BsnI GGCC 1 cut(s) 99
Bso31I GGTCTC 1 cut(s) 150
Bsp119I TTCGAA 1 cut(s) 225
Bsp1286I GDGCHC 1 cut(s) 110
Bsp143I GATC 2 cut(s) 589, 643
BspACI CCGC 3 cut(s) 389, 414, 663
BspANI GGCC 1 cut(s) 99
BspCNI CTCAG 1 cut(s) 160
BspLI GGNNCC 1 cut(s) 524
BspMI ACCTGC 1 cut(s) 447
BspQI GCTCTTC 1 cut(s) 98
BspT104I TTCGAA 1 cut(s) 225
BspT107I GGYRCC 1 cut(s) 522
BspTNI GGTCTC 1 cut(s) 150
BsrBI CCGCTC 1 cut(s) 665
BsrI ACTGG 1 cut(s) 299
BssECI CCNNGG 1 cut(s) 422
BssMI GATC 2 cut(s) 589, 643
BssNI GRCGYC 1 cut(s) 523
BssSI CACGAG 1 cut(s) 666
BssT1I CCWWGG 1 cut(s) 422
Bst2BI CACGAG 1 cut(s) 666
Bst4CI ACNGT 2 cut(s) 140, 259
Bst6I CTCTTC 1 cut(s) 98
BstACI GRCGYC 1 cut(s) 523
BstBI TTCGAA 1 cut(s) 225
BstC8I GCNNGC 2 cut(s) 197, 504
BstDEI CTNAG 1 cut(s) 147
BstF5I GGATG 3 cut(s) 5, 247, 646
BstH2I RGCGCY 1 cut(s) 526
BstHHI GCGC 1 cut(s) 525
BstKTI GATC 2 cut(s) 592, 646
BstMAI GTCTC 2 cut(s) 150, 156
BstMBI GATC 2 cut(s) 589, 643
BstMWI GCNNNNNNNGC 4 cut(s) 105, 168, 529, 662
BstNSI RCATGY 1 cut(s) 506
BstV1I GCAGC 1 cut(s) 519
BstV2I GAAGAC 1 cut(s) 579
BsuRI GGCC 1 cut(s) 99
BtsCI GGATG 3 cut(s) 5, 247, 646
BtsI GCAGTG 1 cut(s) 169
BtsIMutI CAGTG 1 cut(s) 169
BveI ACCTGC 1 cut(s) 447
Cac8I GCNNGC 2 cut(s) 197, 504
CfoI GCGC 1 cut(s) 525
Csp6I GTAC 1 cut(s) 366
CviAII CATG 2 cut(s) 503, 544
CviJI RGCY 7 cut(s) 99, 108, 171, 195, 231, 421, 532
CviKI_1 RGCY 7 cut(s) 99, 108, 171, 195, 231, 421, 532
CviQI GTAC 1 cut(s) 366
DdeI CTNAG 1 cut(s) 147
DinI GGCGCC 1 cut(s) 524
DpnI GATC 2 cut(s) 591, 645
DpnII GATC 2 cut(s) 589, 643
EaeI YGGCCR 1 cut(s) 97
Eam1104I CTCTTC 1 cut(s) 98
EarI CTCTTC 1 cut(s) 98
EciI GGCGGA 1 cut(s) 378
Eco130I CCWWGG 1 cut(s) 422
Eco24I GRGCYC 1 cut(s) 110
Eco31I GGTCTC 1 cut(s) 150
Eco32I GATATC 1 cut(s) 396
EcoRI GAATTC 1 cut(s) 184
EcoRV GATATC 1 cut(s) 396
EcoT14I CCWWGG 1 cut(s) 422
EcoT38I GRGCYC 1 cut(s) 110
EgeI GGCGCC 1 cut(s) 524
EheI GGCGCC 1 cut(s) 524
ErhI CCWWGG 1 cut(s) 422
FaeI CATG 2 cut(s) 506, 547
FaiI YATR 6 cut(s) 205, 318, 404, 450, 504, 545
FalI AAGNNNNNCTT 2 cut(s) 521, 553
FaqI GGGAC 2 cut(s) 106, 228
FatI CATG 2 cut(s) 502, 543
FauI CCCGC 1 cut(s) 407
Fnu4HI GCNGC 2 cut(s) 533, 663
FokI GGATG 2 cut(s) 254, 633
FriOI GRGCYC 1 cut(s) 110
Fsp4HI GCNGC 2 cut(s) 533, 663
FspBI CTAG 2 cut(s) 369, 563
GlaI GCGC 1 cut(s) 524
GluI GCNGC 2 cut(s) 533, 663
HaeII RGCGCY 1 cut(s) 526
HaeIII GGCC 1 cut(s) 99
HhaI GCGC 1 cut(s) 525
Hin1I GRCGYC 1 cut(s) 523
Hin1II CATG 2 cut(s) 506, 547
Hin6I GCGC 1 cut(s) 523
HinP1I GCGC 1 cut(s) 523
HinfI GANTC 6 cut(s) 119, 222, 381, 480, 559, 671
HphI GGTGA 2 cut(s) 350, 578
Hpy188I TCNGA 5 cut(s) 34, 190, 235, 307, 479
Hpy188III TCNNGA 3 cut(s) 263, 650, 668
Hpy99I CGWCG 2 cut(s) 581, 584
HpyAV CCTTC 1 cut(s) 680
HpyCH4III ACNGT 2 cut(s) 140, 259
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 6 cut(s) 199, 207, 402, 502, 535, 656
HpyF10VI GCNNNNNNNGC 4 cut(s) 105, 168, 529, 662
HpyF3I CTNAG 1 cut(s) 147
HpySE526I ACGT 1 cut(s) 36
Hsp92I GRCGYC 1 cut(s) 523
Hsp92II CATG 2 cut(s) 506, 547
HspAI GCGC 1 cut(s) 523
KasI GGCGCC 1 cut(s) 522
Kzo9I GATC 2 cut(s) 589, 643
LguI GCTCTTC 1 cut(s) 98
LpnPI CCDG 7 cut(s) 113, 312, 412, 430, 442, 496, 663
Lsp1109I GCAGC 1 cut(s) 519
LweI GCATC 2 cut(s) 643, 649
MaeI CTAG 2 cut(s) 369, 563
MaeII ACGT 1 cut(s) 36
MalI GATC 2 cut(s) 591, 645
MbiI CCGCTC 1 cut(s) 665
MboI GATC 2 cut(s) 589, 643
MhlI GDGCHC 1 cut(s) 110
MlsI TGGCCA 1 cut(s) 99
MluCI AATT 8 cut(s) 41, 133, 184, 309, 325, 341, 624, 712
MluNI TGGCCA 1 cut(s) 99
Mly113I GGCGCC 1 cut(s) 523
MlyI GAGTC 1 cut(s) 128
MmeI TCCRAC 1 cut(s) 621
Mox20I TGGCCA 1 cut(s) 99
MscI TGGCCA 1 cut(s) 99
MseI TTAA 1 cut(s) 715
MslI CAYNNNNRTG 1 cut(s) 651
Msp20I TGGCCA 1 cut(s) 99
MspA1I CMGCKG 1 cut(s) 414
MwoI GCNNNNNNNGC 4 cut(s) 105, 168, 529, 662
NarI GGCGCC 1 cut(s) 523
NdeII GATC 2 cut(s) 589, 643
NlaIII CATG 2 cut(s) 506, 547
NlaIV GGNNCC 1 cut(s) 524
NspI RCATGY 1 cut(s) 506
NspV TTCGAA 1 cut(s) 225
PaeI GCATGC 1 cut(s) 506
PciSI GCTCTTC 1 cut(s) 98
PcsI WCGNNNNNNNCGW 1 cut(s) 546
PfeI GAWTC 5 cut(s) 222, 381, 480, 559, 671
PkrI GCNGC 2 cut(s) 534, 664
PleI GAGTC 1 cut(s) 127
PluTI GGCGCC 1 cut(s) 526
PpsI GAGTC 1 cut(s) 127
PsiI TTATAA 1 cut(s) 318
PspN4I GGNNCC 1 cut(s) 524
RsaI GTAC 1 cut(s) 367
RsaNI GTAC 1 cut(s) 366
RseI CAYNNNNRTG 1 cut(s) 651
SapI GCTCTTC 1 cut(s) 98
SaqAI TTAA 1 cut(s) 715
SatI GCNGC 2 cut(s) 533, 663
Sau3AI GATC 2 cut(s) 589, 643
ScaI AGTACT 1 cut(s) 367
SchI GAGTC 1 cut(s) 128
SduI GDGCHC 1 cut(s) 110
SetI ASST 9 cut(s) 39, 146, 173, 197, 233, 359, 461, 534, 568
SfaNI GCATC 2 cut(s) 643, 649
SfoI GGCGCC 1 cut(s) 524
SfuI TTCGAA 1 cut(s) 225
SmiMI CAYNNNNRTG 1 cut(s) 651
SmlI CTYRAG 1 cut(s) 527
SmoI CTYRAG 1 cut(s) 527
SpeI ACTAGT 1 cut(s) 368
SphI GCATGC 1 cut(s) 506
Sse9I AATT 8 cut(s) 41, 133, 184, 309, 325, 341, 624, 712
SsiI CCGC 3 cut(s) 389, 414, 663
SspDI GGCGCC 1 cut(s) 522
SspI AATATT 1 cut(s) 293
SspMI CTAG 2 cut(s) 369, 563
StyI CCWWGG 1 cut(s) 422
TaaI ACNGT 2 cut(s) 140, 259
TaiI ACGT 1 cut(s) 39
TaqI TCGA 2 cut(s) 128, 225
TasI AATT 8 cut(s) 41, 133, 184, 309, 325, 341, 624, 712
TatI WGTACW 1 cut(s) 365
TauI GCSGC 1 cut(s) 665
TfiI GAWTC 5 cut(s) 222, 381, 480, 559, 671
Tru1I TTAA 1 cut(s) 715
Tru9I TTAA 1 cut(s) 715
TscAI CASTG 1 cut(s) 169
TseI GCWGC 1 cut(s) 532
TspDTI ATGAA 5 cut(s) 98, 107, 165, 197, 258
TspGWI ACGGA 1 cut(s) 224
TspRI CASTG 1 cut(s) 169
XapI RAATTY 2 cut(s) 41, 184
XceI RCATGY 1 cut(s) 506
XspI CTAG 2 cut(s) 369, 563
ZrmI AGTACT 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.