Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0012282

Physical Location & Seq

Genomic Coordinates Reverse (-)

14765960 .. 14766622

Gene Structure 663 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGCAGCTCGCGGGAGTTGAACCAGACTATGTGACCATAATTGCTGTAATCGCTGCGTGTGCAGATCTGGGAACGCTTGGTCTAGGTTTGTGGCTAAACTGTTTTGTTATGAAGCGAGACTTTAAAGACAATGTTAGGATAAGTAACTCGTTGGTTGATATGTATTCTCGATGTGGTTGTATTGGTTTTGCTCGTCAAGTCTTCGAGAACATGCCGGAAAGGACATTGGTATCATGGAACTCGATGATTGTGGGATTTGCAGTTAATGGGCACGCAGAGGAAGCTCTTGAGTTCTTCAACCTGATGCAGAAGAAAGGGCTCAAGCCAGACGGGGTCAGCTTCACTGGAGCACTCACCGCCTGCAGCCATGCTGGTTTAGTCGATGAGGGGCTCCATTACTTTGATAACATGAAGGGAGTTCACAGAATAACACCCAGAATCGAGCATTATGGATGCATAGTCGATCTCTATAGCCGTGCAGGGAGGTTGGAAGATGCCTTGGGTGTAATAGAAAACATGCCGATGAAACCAAATGAAGTTGTGTTGGGTTCTTTGTTGGCCGCTTGTAGAACCATTGGGAACATCAGTTTAGCTGAAAGATTGATGAAGTACCTCTCTGAGATTCGATCGATCCTGGTGTTGATTCCAACTATGTGCTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

221

Amino Acids

24.24

Weight (kDa)

5.96

Isoelectric Point (pI)

34.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	76 - 122	1.1e-11	PPR repeat family
PPR	PF01535	77 - 107	6.8e-09	PPR repeat
PPR_long	PF17177	91 - 210	1.9e-07	Pentacotripeptide-repeat region of PRORP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05750 AT1G05750
fragaria_vesca	FvH4_3g26660
malus_domestica	MD00G1049500.v1.1 MD00G1071600.v1.1 MD03G1154500.v1.1
prunus_persica	Prupe.6G143700_v2.0.a1
pyrus_communis	pycom03g10830 pycom11g14680
rosa_chinensis	RchiOBHm_Chr5g0048131 RchiOBHm_Chr5g0048161
rosa_laevigata	RLG00000034500
rosa_multiflora	Rmu_sc0001408.1_g000020
rosa_roxburghii	Rroxscaffold_1G00033760
rosa_rugosa	Rorug05G0236900
rosa_samantha	Rh5AG316000 Rh5BG326400 Rh5CG352900
rosa_wichuraiana	Rw5G029620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	11
AciI	CCGC	3 cut(s)	11, 357, 561
AclWI	GGATC	1 cut(s)	625
AcoI	YGGCCR	1 cut(s)	558
AfaI	GTAC	1 cut(s)	611
AgsI	TTSAA	2 cut(s)	20, 298
AjnI	CCWGG	1 cut(s)	633
AluBI	AGCT	4 cut(s)	7, 284, 339, 593
AluI	AGCT	4 cut(s)	7, 284, 339, 593
Alw21I	GWGCWC	2 cut(s)	352, 659
Alw26I	GTCTC	1 cut(s)	111
AlwI	GGATC	1 cut(s)	625
AoxI	GGCC	1 cut(s)	558
ApeKI	GCWGC	3 cut(s)	4, 53, 363
AsuHPI	GGTGA	1 cut(s)	346
BaeGI	GKGCMC	1 cut(s)	273
BaeI	ACNNNNGTAYC	2 cut(s)	213, 246
BanII	GRGCYC	2 cut(s)	321, 393
BbsI	GAAGAC	1 cut(s)	193
Bbv12I	GWGCWC	2 cut(s)	352, 659
BbvI	GCAGC	3 cut(s)	16, 40, 375
BceAI	ACGGC	1 cut(s)	459
BciT130I	CCWGG	1 cut(s)	635
BcoDI	GTCTC	1 cut(s)	111
BfaI	CTAG	2 cut(s)	83, 661
BfmI	CTRYAG	2 cut(s)	361, 469
BglII	AGATCT	1 cut(s)	64
BisI	GCNGC	4 cut(s)	5, 54, 364, 561
BlsI	GCNGC	4 cut(s)	6, 55, 365, 562
Bme1390I	CCNGG	1 cut(s)	635
BmiI	GGNNCC	1 cut(s)	392
BmrFI	CCNGG	1 cut(s)	635
BmsI	GCATC	3 cut(s)	294, 443, 484
BpiI	GAAGAC	1 cut(s)	193
BpmI	CTGGAG	1 cut(s)	366
BpuEI	CTTGAG	2 cut(s)	305, 308
Bsa29I	ATCGAT	1 cut(s)	629
BsaJI	CCNNGG	1 cut(s)	498
Bse1I	ACTGG	1 cut(s)	349
BseBI	CCWGG	1 cut(s)	635
BseCI	ATCGAT	1 cut(s)	629
BseDI	CCNNGG	1 cut(s)	498
BseGI	GGATG	1 cut(s)	458
BseMII	CTCAG	1 cut(s)	609
BseNI	ACTGG	1 cut(s)	349
BseSI	GKGCMC	1 cut(s)	273
BseXI	GCAGC	3 cut(s)	16, 40, 375
BsgI	GTGCAG	2 cut(s)	81, 498
Bsh1236I	CGCG	1 cut(s)	11
Bsh1285I	CGRYCG	1 cut(s)	629
BshFI	GGCC	1 cut(s)	560
BshVI	ATCGAT	1 cut(s)	629
BsiEI	CGRYCG	1 cut(s)	629
BsiHKAI	GWGCWC	2 cut(s)	352, 659
BsiSI	CCGG	1 cut(s)	215
BsmAI	GTCTC	1 cut(s)	111
BsnI	GGCC	1 cut(s)	560
Bsp1286I	GDGCHC	5 cut(s)	273, 321, 352, 393, 659
Bsp143I	GATC	4 cut(s)	64, 463, 626, 630
BspACI	CCGC	3 cut(s)	11, 357, 561
BspANI	GGCC	1 cut(s)	560
BspCNI	CTCAG	1 cut(s)	610
BspDI	ATCGAT	1 cut(s)	629
BspFNI	CGCG	1 cut(s)	11
BspLI	GGNNCC	1 cut(s)	392
BspMAI	CTGCAG	1 cut(s)	365
BspPI	GGATC	1 cut(s)	625
BsrI	ACTGG	1 cut(s)	349
BssECI	CCNNGG	1 cut(s)	498
BssMI	GATC	4 cut(s)	64, 463, 626, 630
BssT1I	CCWWGG	1 cut(s)	498
Bst2UI	CCWGG	1 cut(s)	635
Bst4CI	ACNGT	1 cut(s)	101
BstC8I	GCNNGC	3 cut(s)	9, 273, 361
BstDEI	CTNAG	1 cut(s)	618
BstF5I	GGATG	1 cut(s)	458
BstFNI	CGCG	1 cut(s)	11
BstKTI	GATC	4 cut(s)	67, 466, 629, 633
BstMAI	GTCTC	1 cut(s)	111
BstMBI	GATC	4 cut(s)	64, 463, 626, 630
BstMCI	CGRYCG	1 cut(s)	629
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 59, 281, 356
BstNI	CCWGG	1 cut(s)	635
BstNSI	RCATGY	2 cut(s)	214, 520
BstSCI	CCNGG	1 cut(s)	633
BstSFI	CTRYAG	2 cut(s)	361, 469
BstSLI	GKGCMC	1 cut(s)	273
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	3 cut(s)	16, 40, 375
BstV2I	GAAGAC	1 cut(s)	193
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
Bsu15I	ATCGAT	1 cut(s)	629
BsuRI	GGCC	1 cut(s)	560
BsuTUI	ATCGAT	1 cut(s)	629
BtsCI	GGATG	1 cut(s)	458
BtsIMutI	CAGTG	1 cut(s)	342
Cac8I	GCNNGC	3 cut(s)	9, 273, 361
ClaI	ATCGAT	1 cut(s)	629
Csp6I	GTAC	1 cut(s)	610
CviAII	CATG	5 cut(s)	211, 234, 368, 409, 517
CviQI	GTAC	1 cut(s)	610
DdeI	CTNAG	1 cut(s)	618
DpnI	GATC	4 cut(s)	66, 465, 628, 632
DpnII	GATC	4 cut(s)	64, 463, 626, 630
DraI	TTTAAA	1 cut(s)	124
EaeI	YGGCCR	1 cut(s)	558
Eco130I	CCWWGG	1 cut(s)	498
Eco24I	GRGCYC	2 cut(s)	321, 393
EcoRII	CCWGG	1 cut(s)	633
EcoT14I	CCWWGG	1 cut(s)	498
EcoT22I	ATGCAT	1 cut(s)	458
EcoT38I	GRGCYC	2 cut(s)	321, 393
ErhI	CCWWGG	1 cut(s)	498
FaeI	CATG	5 cut(s)	214, 237, 371, 412, 520
FalI	AAGNNNNNCTT	2 cut(s)	104, 136
FatI	CATG	5 cut(s)	210, 233, 367, 408, 516
FauI	CCCGC	1 cut(s)	4
Fnu4HI	GCNGC	4 cut(s)	5, 54, 364, 561
FokI	GGATG	1 cut(s)	465
FriOI	GRGCYC	2 cut(s)	321, 393
Fsp4HI	GCNGC	4 cut(s)	5, 54, 364, 561
FspBI	CTAG	2 cut(s)	83, 661
GluI	GCNGC	4 cut(s)	5, 54, 364, 561
GsuI	CTGGAG	1 cut(s)	366
HaeIII	GGCC	1 cut(s)	560
HapII	CCGG	1 cut(s)	215
Hin1II	CATG	5 cut(s)	214, 237, 371, 412, 520
HinfI	GANTC	3 cut(s)	438, 622, 643
HpaII	CCGG	1 cut(s)	215
HphI	GGTGA	1 cut(s)	346
Hpy166II	GTNNAC	1 cut(s)	421
Hpy188I	TCNGA	1 cut(s)	619
Hpy188III	TCNNGA	3 cut(s)	168, 205, 287
Hpy8I	GTNNAC	1 cut(s)	421
HpyAV	CCTTC	1 cut(s)	406
HpyCH4III	ACNGT	1 cut(s)	101
HpyCH4V	TGCA	7 cut(s)	4, 62, 260, 307, 363, 456, 479
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 59, 281, 356
HpyF3I	CTNAG	1 cut(s)	618
Hsp92II	CATG	5 cut(s)	214, 237, 371, 412, 520
Kzo9I	GATC	4 cut(s)	64, 463, 626, 630
LmnI	GCTCC	3 cut(s)	347, 396, 662
Lsp1109I	GCAGC	3 cut(s)	16, 40, 375
LweI	GCATC	3 cut(s)	294, 443, 484
MaeI	CTAG	2 cut(s)	83, 661
MaeIII	GTNAC	2 cut(s)	31, 143
MalI	GATC	4 cut(s)	66, 465, 628, 632
MboI	GATC	4 cut(s)	64, 463, 626, 630
MboII	GAAGA	4 cut(s)	193, 286, 322, 503
MflI	RGATCY	1 cut(s)	64
MhlI	GDGCHC	5 cut(s)	273, 321, 352, 393, 659
MluCI	AATT	1 cut(s)	39
MmeI	TCCRAC	1 cut(s)	468
MnlI	CCTC	4 cut(s)	271, 379, 477, 623
Mph1103I	ATGCAT	1 cut(s)	458
MseI	TTAA	2 cut(s)	123, 264
MslI	CAYNNNNRTG	1 cut(s)	521
MspI	CCGG	1 cut(s)	215
MspR9I	CCNGG	1 cut(s)	635
MvaI	CCWGG	1 cut(s)	635
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	4 cut(s)	50, 59, 281, 356
NdeII	GATC	4 cut(s)	64, 463, 626, 630
NlaIII	CATG	5 cut(s)	214, 237, 371, 412, 520
NlaIV	GGNNCC	1 cut(s)	392
NmuCI	GTSAC	1 cut(s)	31
NsiI	ATGCAT	1 cut(s)	458
NspI	RCATGY	2 cut(s)	214, 520
PfeI	GAWTC	3 cut(s)	438, 622, 643
PflFI	GACNNNGTC	1 cut(s)	332
PkrI	GCNGC	4 cut(s)	6, 55, 365, 562
Ple19I	CGATCG	1 cut(s)	629
Psp6I	CCWGG	1 cut(s)	633
PspGI	CCWGG	1 cut(s)	633
PspN4I	GGNNCC	1 cut(s)	392
PstI	CTGCAG	1 cut(s)	365
PsuI	RGATCY	1 cut(s)	64
PsyI	GACNNNGTC	1 cut(s)	332
PvuI	CGATCG	1 cut(s)	629
RsaI	GTAC	1 cut(s)	611
RsaNI	GTAC	1 cut(s)	610
RseI	CAYNNNNRTG	1 cut(s)	521
SaqAI	TTAA	2 cut(s)	123, 264
SatI	GCNGC	4 cut(s)	5, 54, 364, 561
Sau3AI	GATC	4 cut(s)	64, 463, 626, 630
ScrFI	CCNGG	1 cut(s)	635
SduI	GDGCHC	5 cut(s)	273, 321, 352, 393, 659
SetI	ASST	8 cut(s)	9, 88, 286, 303, 341, 488, 595, 615
SfaNI	GCATC	3 cut(s)	294, 443, 484
SfcI	CTRYAG	2 cut(s)	361, 469
SmiMI	CAYNNNNRTG	1 cut(s)	521
SmlI	CTYRAG	2 cut(s)	287, 320
SmoI	CTYRAG	2 cut(s)	287, 320
Sse9I	AATT	1 cut(s)	39
SsiI	CCGC	3 cut(s)	11, 357, 561
SspMI	CTAG	2 cut(s)	83, 661
StyD4I	CCNGG	1 cut(s)	633
StyI	CCWWGG	1 cut(s)	498
TaaI	ACNGT	1 cut(s)	101
TaqI	TCGA	8 cut(s)	169, 204, 242, 381, 441, 462, 625, 629
TasI	AATT	1 cut(s)	39
TauI	GCSGC	1 cut(s)	563
TfiI	GAWTC	3 cut(s)	438, 622, 643
Tru1I	TTAA	2 cut(s)	123, 264
Tru9I	TTAA	2 cut(s)	123, 264
TscAI	CASTG	1 cut(s)	349
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	3 cut(s)	4, 53, 363
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	5 cut(s)	125, 425, 539, 549, 620
TspRI	CASTG	1 cut(s)	349
Tth111I	GACNNNGTC	1 cut(s)	332
XceI	RCATGY	2 cut(s)	214, 520
XspI	CTAG	2 cut(s)	83, 661
Zsp2I	ATGCAT	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.