Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0004829

Physical Location & Seq

Genomic Coordinates Forward (+)

15352922 .. 15357855

Gene Structure 4934 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGAGGGCGTTGCTCTCTCTGAAGATCTCTCCGATTCCACTCAGCGTTCCGACTCGGACAGCGACCAGCGAGTCTACTTCGTTCCCTACAGTTGGTGGAGAGATGCACAGGAATCAGTTTTGGGCGATTCTGATGGGAAGAGAGGGATTTTGTACGTGGCTTTGCAGGCTTCTTCGTATGCTGGCCCTTTGAAGCTCATCAATAACATTTTCAACTCAGATCTTGTGTTCAATCTAAGGAGAGAGGATGATAGTGTACATAGTGGTGAAAATGGCGAAGTCGGTGTCTCAGGCCGAGACTACGCATTGGTGCTCGGAGAAATGTGGGTTCAGGCACTCAGATGGCATAGTGATTCTAAAGTTGCAGTGAAGGATGGTAGGAGTTTTTCAGCTGCGGAAGATGACATGACCGATGTCTATCCGCTACAACTCAGACTTTCTGTTTCACGAGAAACAAATTCATTGGGAGTAAAAGTTACAAAGAAGGATAATGCAGTTGAGTTCTTCAAGAGAGCCTGCAAAATTTTCAGTGTGGAGTCTGAGATGTTACGCATCTGGGACTTTTCGGGGCAGATAAACTTATTTTTTGCAAATGAAAGAGCCAAGTCTTCAAGAGACTTTCAACGACAGTCAGGTGAGATAATGTTGGAGTTGCAAGTTTATGGGTTGTCAGATTCCTTTAAGTGCAGGGAAGGGAAAAAAGATGAGATGGCCACACAACATTCAACCATCGCAAATTCCTGTTGTGGTGCTTCAGTTATGATGAATGGTTCTGCGGGAATCACAAATTCTAACTTCATCCGTTCATTATGGGGAAGCTCTTGTGAAACAGGTTCTTTAGGATTGACAGGATTACAGAACCTTGGAAATACTTGTTTCATGAATAGTTCCATCCAGTGTTTAGCGCACACCCCAAAGCTTGTGGACTATTTTCTTGGAGATTATGGTAGAGAAATAAATCCAGACAATCCATTGGGCATGAATGGGGAGATTGCTTTAGCCTTTGGAGATCTGTTAAGGAAGTTATGGGTTCCTGGAGCAACTCCAGTAGCCCCAAGGCCATTTAAGTCAAAACTTTCTCGATTTGCTGCACAGTTTAATGGATTTAATCAACATGATTCCCAAGAGCTCCTGGCTTTTTTGTTGGATGGACTTCATGAAGATCGATTAATCGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

UCH

Protein Analysis

393

Amino Acids

43.52

Weight (kDa)

5.15

Isoelectric Point (pI)

36.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubiquitin_UBP8	PF25242	144 - 198	1.4e-31	UBP8-like, ubiquitin-like domain
UCH	PF00443	283 - 388	6.4e-25	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22030 AT5G22030
fragaria_vesca	FvH4_3g26140 FvH4_3g26140 FvH4_3g26140 FvH4_3g26140 FvH4_3g26140 FvH4_3g26140 FvH4_3g26140
malus_domestica	MD03G1159600.v1.1 MD11G1174900.v1.1
prunus_persica	Prupe.6G147300_v2.0.a1 Prupe.6G147300_v2.0.a1 Prupe.6G147300_v2.0.a1 Prupe.6G147300_v2.0.a1
pyrus_communis	pycom03g11220 pycom03g11230 pycom11g14960 pycom11g14970
rosa_chinensis	RchiOBHm_Chr5g0049121
rosa_laevigata	RLG00000034590
rosa_multiflora	Rmu_sc0000530.1_g000038 Rmu_sc0000530.1_g000039
rosa_roxburghii	Rroxscaffold_1G00032700
rosa_rugosa	Rorug05G0243300 Rorug05G0243300
rosa_samantha	Rh5AG322700 Rh5BG333300 Rh5CG358200 Rh5DG344700
rosa_wichuraiana	Rw5G030460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	71
AccI	GTMKAC	1 cut(s)	75
AciI	CCGC	3 cut(s)	395, 422, 776
AcoI	YGGCCR	1 cut(s)	711
AcsI	RAATTY	4 cut(s)	457, 522, 736, 787
AcuI	CTGAAG	2 cut(s)	42, 738
AfaI	GTAC	2 cut(s)	155, 258
AfiI	CCNNNNNNNGG	1 cut(s)	93
AgsI	TTSAA	7 cut(s)	193, 214, 232, 508, 612, 623, 726
AjnI	CCWGG	2 cut(s)	1033, 1131
AluBI	AGCT	5 cut(s)	196, 392, 819, 919, 1129
AluI	AGCT	5 cut(s)	196, 392, 819, 919, 1129
Alw21I	GWGCWC	2 cut(s)	315, 1131
Alw26I	GTCTC	3 cut(s)	291, 292, 609
AoxI	GGCC	4 cut(s)	184, 292, 711, 1058
ApeKI	GCWGC	2 cut(s)	392, 1088
ApoI	RAATTY	4 cut(s)	457, 522, 736, 787
ArsI	GACNNNNNNTTYG	2 cut(s)	270, 302
AseI	ATTAAT	1 cut(s)	1169
AspLEI	GCGC	1 cut(s)	907
AspS9I	GGNCC	1 cut(s)	185
AsuHPI	GGTGA	2 cut(s)	278, 647
BalI	TGGCCA	1 cut(s)	713
BanII	GRGCYC	1 cut(s)	1131
BauI	CACGAG	1 cut(s)	447
BbsI	GAAGAC	1 cut(s)	600
Bbv12I	GWGCWC	2 cut(s)	315, 1131
BbvI	GCAGC	2 cut(s)	379, 1075
BccI	CCATC	7 cut(s)	128, 336, 368, 703, 737, 899, 1142
BciT130I	CCWGG	2 cut(s)	1035, 1133
BcoDI	GTCTC	3 cut(s)	291, 292, 609
BfmI	CTRYAG	1 cut(s)	88
BglII	AGATCT	3 cut(s)	25, 220, 1009
BisI	GCNGC	2 cut(s)	393, 1089
BlsI	GCNGC	2 cut(s)	394, 1090
Bme1390I	CCNGG	2 cut(s)	1035, 1133
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	1 cut(s)	1032
BmrFI	CCNGG	2 cut(s)	1035, 1133
BmsI	GCATC	2 cut(s)	94, 561
BoxI	GACNNNNGTC	1 cut(s)	413
BpiI	GAAGAC	1 cut(s)	600
BpmI	CTGGAG	2 cut(s)	1029, 1056
Bsa29I	ATCGAT	1 cut(s)	1165
BsaAI	YACGTR	1 cut(s)	157
BsaBI	GATNNNNATC	1 cut(s)	417
BsaJI	CCNNGG	2 cut(s)	862, 1055
BsaXI	ACNNNNNCTCC	2 cut(s)	459, 489
Bsc4I	CCNNNNNNNGG	1 cut(s)	93
Bse1I	ACTGG	2 cut(s)	895, 1046
Bse8I	GATNNNNATC	1 cut(s)	417
BseBI	CCWGG	2 cut(s)	1035, 1133
BseCI	ATCGAT	1 cut(s)	1165
BseDI	CCNNGG	2 cut(s)	862, 1055
BseGI	GGATG	5 cut(s)	253, 379, 798, 891, 1153
BseJI	GATNNNNATC	1 cut(s)	417
BseLI	CCNNNNNNNGG	1 cut(s)	93
BseMII	CTCAG	6 cut(s)	56, 231, 303, 352, 445, 531
BseNI	ACTGG	2 cut(s)	895, 1046
BseXI	GCAGC	2 cut(s)	379, 1075
BsgI	GTGCAG	2 cut(s)	706, 1074
BshFI	GGCC	4 cut(s)	186, 294, 713, 1060
BshVI	ATCGAT	1 cut(s)	1165
BsiHKAI	GWGCWC	2 cut(s)	315, 1131
BslFI	GGGAC	1 cut(s)	572
BslI	CCNNNNNNNGG	1 cut(s)	93
BsmAI	GTCTC	3 cut(s)	291, 292, 609
BsmFI	GGGAC	1 cut(s)	572
BsnI	GGCC	4 cut(s)	186, 294, 713, 1060
Bsp1286I	GDGCHC	2 cut(s)	315, 1131
Bsp1407I	TGTACA	1 cut(s)	256
Bsp143I	GATC	4 cut(s)	25, 220, 1009, 1162
BspACI	CCGC	3 cut(s)	395, 422, 776
BspANI	GGCC	4 cut(s)	186, 294, 713, 1060
BspCNI	CTCAG	6 cut(s)	55, 230, 302, 351, 444, 532
BspDI	ATCGAT	1 cut(s)	1165
BspHI	TCATGA	2 cut(s)	879, 1156
BspLI	GGNNCC	1 cut(s)	1032
BsrGI	TGTACA	1 cut(s)	256
BsrI	ACTGG	2 cut(s)	895, 1046
BssECI	CCNNGG	2 cut(s)	862, 1055
BssMI	GATC	4 cut(s)	25, 220, 1009, 1162
BssSI	CACGAG	1 cut(s)	447
BssT1I	CCWWGG	2 cut(s)	862, 1055
Bst2BI	CACGAG	1 cut(s)	447
Bst2UI	CCWGG	2 cut(s)	1035, 1133
Bst4CI	ACNGT	3 cut(s)	92, 630, 1095
Bst6I	CTCTTC	1 cut(s)	134
BstAUI	TGTACA	1 cut(s)	256
BstBAI	YACGTR	1 cut(s)	157
BstC8I	GCNNGC	3 cut(s)	168, 184, 517
BstDEI	CTNAG	7 cut(s)	42, 217, 236, 289, 338, 431, 540
BstF5I	GGATG	5 cut(s)	253, 379, 798, 891, 1153
BstHHI	GCGC	1 cut(s)	907
BstKTI	GATC	4 cut(s)	28, 223, 1012, 1165
BstMAI	GTCTC	3 cut(s)	291, 292, 609
BstMBI	GATC	4 cut(s)	25, 220, 1009, 1162
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNI	CCWGG	2 cut(s)	1035, 1133
BstPAI	GACNNNNGTC	1 cut(s)	413
BstSCI	CCNGG	2 cut(s)	1033, 1131
BstSFI	CTRYAG	1 cut(s)	88
BstV1I	GCAGC	2 cut(s)	379, 1075
BstV2I	GAAGAC	1 cut(s)	600
BstX2I	RGATCY	3 cut(s)	25, 220, 1009
BstYI	RGATCY	3 cut(s)	25, 220, 1009
Bsu15I	ATCGAT	1 cut(s)	1165
BsuRI	GGCC	4 cut(s)	186, 294, 713, 1060
BsuTUI	ATCGAT	1 cut(s)	1165
BtgZI	GCGATG	1 cut(s)	715
BtsCI	GGATG	5 cut(s)	253, 379, 798, 891, 1153
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	3 cut(s)	372, 535, 902
Cac8I	GCNNGC	3 cut(s)	168, 184, 517
CciI	TCATGA	2 cut(s)	879, 1156
CfoI	GCGC	1 cut(s)	907
Cfr13I	GGNCC	1 cut(s)	185
ClaI	ATCGAT	1 cut(s)	1165
Csp6I	GTAC	2 cut(s)	154, 257
CspCI	CAANNNNNGTGG	2 cut(s)	903, 938
CviAII	CATG	5 cut(s)	406, 880, 979, 1115, 1157
CviQI	GTAC	2 cut(s)	154, 257
DdeI	CTNAG	7 cut(s)	42, 217, 236, 289, 338, 431, 540
DpnI	GATC	4 cut(s)	27, 222, 1011, 1164
DpnII	GATC	4 cut(s)	25, 220, 1009, 1162
DrdI	GACNNNNNNGTC	1 cut(s)	71
DseDI	GACNNNNNNGTC	1 cut(s)	71
EaeI	YGGCCR	1 cut(s)	711
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
Ecl136II	GAGCTC	1 cut(s)	1129
Eco130I	CCWWGG	2 cut(s)	862, 1055
Eco24I	GRGCYC	1 cut(s)	1131
Eco53kI	GAGCTC	1 cut(s)	1129
Eco57I	CTGAAG	2 cut(s)	42, 738
EcoICRI	GAGCTC	1 cut(s)	1129
EcoRII	CCWGG	2 cut(s)	1033, 1131
EcoT14I	CCWWGG	2 cut(s)	862, 1055
EcoT38I	GRGCYC	1 cut(s)	1131
ErhI	CCWWGG	2 cut(s)	862, 1055
FaeI	CATG	5 cut(s)	409, 883, 982, 1118, 1160
FaqI	GGGAC	1 cut(s)	572
FatI	CATG	5 cut(s)	405, 879, 978, 1114, 1156
FauI	CCCGC	1 cut(s)	769
FblI	GTMKAC	1 cut(s)	75
Fnu4HI	GCNGC	2 cut(s)	393, 1089
FokI	GGATG	5 cut(s)	260, 386, 785, 878, 1160
FriOI	GRGCYC	1 cut(s)	1131
Fsp4HI	GCNGC	2 cut(s)	393, 1089
GlaI	GCGC	1 cut(s)	906
GluI	GCNGC	2 cut(s)	393, 1089
GsuI	CTGGAG	2 cut(s)	1029, 1056
HaeIII	GGCC	4 cut(s)	186, 294, 713, 1060
HhaI	GCGC	1 cut(s)	907
Hin1II	CATG	5 cut(s)	409, 883, 982, 1118, 1160
Hin6I	GCGC	1 cut(s)	905
HinP1I	GCGC	1 cut(s)	905
HindIII	AAGCTT	1 cut(s)	917
HphI	GGTGA	2 cut(s)	278, 647
Hpy166II	GTNNAC	3 cut(s)	76, 257, 925
Hpy188III	TCNNGA	7 cut(s)	447, 508, 612, 880, 962, 1080, 1157
Hpy8I	GTNNAC	3 cut(s)	76, 257, 925
HpyAV	CCTTC	3 cut(s)	364, 478, 686
HpyCH4III	ACNGT	3 cut(s)	92, 630, 1095
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	9 cut(s)	107, 166, 365, 494, 519, 590, 655, 687, 1091
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpyF3I	CTNAG	7 cut(s)	42, 217, 236, 289, 338, 431, 540
HpySE526I	ACGT	1 cut(s)	156
Hsp92II	CATG	5 cut(s)	409, 883, 982, 1118, 1160
HspAI	GCGC	1 cut(s)	905
Kzo9I	GATC	4 cut(s)	25, 220, 1009, 1162
LmnI	GCTCC	2 cut(s)	1037, 1134
Lsp1109I	GCAGC	2 cut(s)	379, 1075
LweI	GCATC	2 cut(s)	94, 561
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	2 cut(s)	475, 546
MalI	GATC	4 cut(s)	27, 222, 1011, 1164
MboI	GATC	4 cut(s)	25, 220, 1009, 1162
MboII	GAAGA	7 cut(s)	35, 151, 165, 410, 496, 600, 1172
MflI	RGATCY	3 cut(s)	25, 220, 1009
MhlI	GDGCHC	2 cut(s)	315, 1131
MlsI	TGGCCA	1 cut(s)	713
MluCI	AATT	4 cut(s)	457, 522, 736, 787
MluNI	TGGCCA	1 cut(s)	713
MlyI	GAGTC	3 cut(s)	47, 81, 545
MmeI	TCCRAC	3 cut(s)	75, 627, 1125
MnlI	CCTC	2 cut(s)	137, 238
Mox20I	TGGCCA	1 cut(s)	713
MscI	TGGCCA	1 cut(s)	713
MseI	TTAA	6 cut(s)	681, 1016, 1065, 1098, 1107, 1169
MslI	CAYNNNNRTG	2 cut(s)	264, 340
Msp20I	TGGCCA	1 cut(s)	713
MspA1I	CMGCKG	1 cut(s)	392
MspR9I	CCNGG	2 cut(s)	1035, 1133
MvaI	CCWGG	2 cut(s)	1035, 1133
MwoI	GCNNNNNNNGC	1 cut(s)	167
NdeII	GATC	4 cut(s)	25, 220, 1009, 1162
NlaIII	CATG	5 cut(s)	409, 883, 982, 1118, 1160
NlaIV	GGNNCC	1 cut(s)	1032
NmeAIII	GCCGAG	1 cut(s)	320
PagI	TCATGA	2 cut(s)	879, 1156
PfeI	GAWTC	7 cut(s)	35, 113, 128, 353, 674, 780, 1118
PfoI	TCCNGGA	1 cut(s)	1033
PkrI	GCNGC	2 cut(s)	394, 1090
PleI	GAGTC	3 cut(s)	47, 80, 544
PpsI	GAGTC	3 cut(s)	47, 80, 544
Ppu21I	YACGTR	1 cut(s)	157
PshAI	GACNNNNGTC	1 cut(s)	413
PshBI	ATTAAT	1 cut(s)	1169
Psp124BI	GAGCTC	1 cut(s)	1131
Psp6I	CCWGG	2 cut(s)	1033, 1131
PspGI	CCWGG	2 cut(s)	1033, 1131
PspN4I	GGNNCC	1 cut(s)	1032
PspPI	GGNCC	1 cut(s)	185
PsuI	RGATCY	3 cut(s)	25, 220, 1009
PvuII	CAGCTG	1 cut(s)	392
RsaI	GTAC	2 cut(s)	155, 258
RsaNI	GTAC	2 cut(s)	154, 257
RseI	CAYNNNNRTG	2 cut(s)	264, 340
SacI	GAGCTC	1 cut(s)	1131
SaqAI	TTAA	6 cut(s)	681, 1016, 1065, 1098, 1107, 1169
SatI	GCNGC	2 cut(s)	393, 1089
Sau3AI	GATC	4 cut(s)	25, 220, 1009, 1162
Sau96I	GGNCC	1 cut(s)	185
SchI	GAGTC	3 cut(s)	47, 81, 545
ScrFI	CCNGG	2 cut(s)	1035, 1133
SduI	GDGCHC	2 cut(s)	315, 1131
SetI	ASST	9 cut(s)	159, 198, 394, 637, 821, 835, 864, 921, 1131
SfaNI	GCATC	2 cut(s)	94, 561
SfcI	CTRYAG	1 cut(s)	88
SmiMI	CAYNNNNRTG	2 cut(s)	264, 340
Sse9I	AATT	4 cut(s)	457, 522, 736, 787
SsiI	CCGC	3 cut(s)	395, 422, 776
SstI	GAGCTC	1 cut(s)	1131
StyD4I	CCNGG	2 cut(s)	1033, 1131
StyI	CCWWGG	2 cut(s)	862, 1055
TaaI	ACNGT	3 cut(s)	92, 630, 1095
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	2 cut(s)	1081, 1165
TaqII	GACCGA	1 cut(s)	425
TasI	AATT	4 cut(s)	457, 522, 736, 787
TatI	WGTACW	1 cut(s)	256
TfiI	GAWTC	7 cut(s)	35, 113, 128, 353, 674, 780, 1118
Tru1I	TTAA	6 cut(s)	681, 1016, 1065, 1098, 1107, 1169
Tru9I	TTAA	6 cut(s)	681, 1016, 1065, 1098, 1107, 1169
TscAI	CASTG	3 cut(s)	372, 535, 902
TseI	GCWGC	2 cut(s)	392, 1088
TspGWI	ACGGA	1 cut(s)	791
TspRI	CASTG	3 cut(s)	372, 535, 902
VspI	ATTAAT	1 cut(s)	1169
XapI	RAATTY	4 cut(s)	457, 522, 736, 787
XmiI	GTMKAC	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.