Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0009025

Physical Location & Seq

Genomic Coordinates Reverse (-)

15395928 .. 15397937

Gene Structure 2010 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGTGACGGTGAGATGTGGGCATTGTGCCAATCTGCTCTCTGTTAATACCGGAGGTTCCCTTCAGTCGACTACCATTCCTCCTCAAAATCCGCAGTTACAGAAACAACACCTGAGCTCAGAGGATTCAAATAAAAACTGCGGATCGTCGTCCTCGTCGTCATCATCATCCAAATCCAACAAGTTTGGTCATGCATTTGAGTCTCTAGAGCTTCATGAACAACCTAGAGTCTCTCCCATACCCCCACCAGAGAAAAGACAGCGGGTTCCCTCAGCATATAACAATTTTATCAAGGAGGAGATCCAAAGGATTAAAGCTAGTAACCCTGACATTAGTCATAGGGAAGCTTTTAGCAAGGCAGCTAAAAATGTAAGTTACGGGTTGATAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001708 GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0009987 GO:0010158 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0045165 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

131

Amino Acids

14.19

Weight (kDa)

9.33

Isoelectric Point (pI)

62.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YABBY_N	PF24868	1 - 28	2e-09	YABBY, N-terminal
YABBY	PF04690	79 - 123	3.4e-27	YABBY protein, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08465
fragaria_vesca	FvH4_3g26130 FvH4_3g26130
malus_domestica	MD00G1189200.v1.1 MD03G1159800.v1.1
prunus_persica	Prupe.6G147600_v2.0.a1 Prupe.6G147600_v2.0.a1 Prupe.6G147600_v2.0.a1 Prupe.6G147600_v2.0.a1
pyrus_communis	pycom03g11240 pycom11g14980
rosa_chinensis	RchiOBHm_Chr5g0049141
rosa_laevigata	RLG00000034593
rosa_multiflora	Rmu_sc0001677.1_g000009
rosa_roxburghii	Rroxscaffold_1G00032660
rosa_rugosa	Rorug05G0243600 Rorug05G0243700
rosa_samantha	Rh5AG322900 Rh5BG333400 Rh5CG358300 Rh5DG344800
rosa_wichuraiana	Rw5G030470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	68
AciI	CCGC	3 cut(s)	92, 141, 262
AclWI	GGATC	2 cut(s)	151, 295
AcuI	CTGAAG	1 cut(s)	47
AgsI	TTSAA	1 cut(s)	129
AluBI	AGCT	5 cut(s)	117, 211, 317, 347, 362
AluI	AGCT	5 cut(s)	117, 211, 317, 347, 362
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	2 cut(s)	207, 235
AlwI	GGATC	2 cut(s)	151, 295
ApeKI	GCWGC	1 cut(s)	359
AsuHPI	GGTGA	2 cut(s)	16, 22
BanII	GRGCYC	1 cut(s)	119
Bbv12I	GWGCWC	1 cut(s)	119
BbvCI	CCTCAGC	1 cut(s)	271
BbvI	GCAGC	1 cut(s)	371
BcoDI	GTCTC	2 cut(s)	207, 235
BfaI	CTAG	3 cut(s)	206, 225, 318
BisI	GCNGC	1 cut(s)	360
BlsI	GCNGC	1 cut(s)	361
BmiI	GGNNCC	2 cut(s)	58, 267
BoxI	GACNNNNGTC	1 cut(s)	333
Bpu10I	CCTNAGC	2 cut(s)	113, 271
BsaWI	WCCGGW	1 cut(s)	50
BsaXI	ACNNNNNCTCC	2 cut(s)	64, 94
BseGI	GGATG	1 cut(s)	167
BseMII	CTCAG	3 cut(s)	104, 132, 285
BseRI	GAGGAG	2 cut(s)	72, 311
BseXI	GCAGC	1 cut(s)	371
BsiHKAI	GWGCWC	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	51
BsmAI	GTCTC	2 cut(s)	207, 235
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp143I	GATC	2 cut(s)	143, 300
BspACI	CCGC	3 cut(s)	92, 141, 262
BspCNI	CTCAG	3 cut(s)	105, 131, 284
BspHI	TCATGA	1 cut(s)	214
BspLI	GGNNCC	2 cut(s)	58, 267
BspPI	GGATC	2 cut(s)	151, 295
BssMI	GATC	2 cut(s)	143, 300
Bst4CI	ACNGT	1 cut(s)	10
BstDEI	CTNAG	3 cut(s)	113, 118, 271
BstF5I	GGATG	1 cut(s)	167
BstKTI	GATC	2 cut(s)	146, 303
BstMAI	GTCTC	2 cut(s)	207, 235
BstMBI	GATC	2 cut(s)	143, 300
BstPAI	GACNNNNGTC	1 cut(s)	333
BstV1I	GCAGC	1 cut(s)	371
BstX2I	RGATCY	1 cut(s)	300
BstYI	RGATCY	1 cut(s)	300
BtsCI	GGATG	1 cut(s)	167
CciI	TCATGA	1 cut(s)	214
CviAII	CATG	2 cut(s)	191, 215
CviJI	RGCY	5 cut(s)	117, 211, 317, 347, 362
CviKI_1	RGCY	5 cut(s)	117, 211, 317, 347, 362
DdeI	CTNAG	3 cut(s)	113, 118, 271
DpnI	GATC	2 cut(s)	145, 302
DpnII	GATC	2 cut(s)	143, 300
Ecl136II	GAGCTC	1 cut(s)	117
Eco24I	GRGCYC	1 cut(s)	119
Eco53kI	GAGCTC	1 cut(s)	117
Eco57I	CTGAAG	1 cut(s)	47
EcoICRI	GAGCTC	1 cut(s)	117
EcoT22I	ATGCAT	1 cut(s)	196
EcoT38I	GRGCYC	1 cut(s)	119
FaeI	CATG	2 cut(s)	194, 218
FaiI	YATR	7 cut(s)	192, 216, 239, 277, 279, 339, 391
FatI	CATG	2 cut(s)	190, 214
FauI	CCCGC	1 cut(s)	255
FblI	GTMKAC	1 cut(s)	68
Fnu4HI	GCNGC	1 cut(s)	360
FokI	GGATG	1 cut(s)	154
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	1 cut(s)	360
FspBI	CTAG	3 cut(s)	206, 225, 318
GluI	GCNGC	1 cut(s)	360
HapII	CCGG	1 cut(s)	51
Hin1II	CATG	2 cut(s)	194, 218
HincII	GTYRAC	1 cut(s)	69
HindII	GTYRAC	1 cut(s)	69
HindIII	AAGCTT	1 cut(s)	345
HinfI	GANTC	3 cut(s)	125, 200, 228
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	2 cut(s)	16, 22
Hpy166II	GTNNAC	1 cut(s)	69
Hpy188I	TCNGA	1 cut(s)	121
Hpy188III	TCNNGA	2 cut(s)	206, 215
Hpy8I	GTNNAC	1 cut(s)	69
Hpy99I	CGWCG	2 cut(s)	151, 160
HpyAV	CCTTC	1 cut(s)	71
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4V	TGCA	1 cut(s)	194
HpyF3I	CTNAG	3 cut(s)	113, 118, 271
Hsp92II	CATG	2 cut(s)	194, 218
Kzo9I	GATC	2 cut(s)	143, 300
LpnPI	CCDG	4 cut(s)	64, 125, 261, 339
Lsp1109I	GCAGC	1 cut(s)	371
MaeI	CTAG	3 cut(s)	206, 225, 318
MaeIII	GTNAC	4 cut(s)	4, 96, 320, 374
MalI	GATC	2 cut(s)	145, 302
MboI	GATC	2 cut(s)	143, 300
MflI	RGATCY	1 cut(s)	300
MhlI	GDGCHC	1 cut(s)	119
MluCI	AATT	1 cut(s)	283
MlyI	GAGTC	2 cut(s)	209, 237
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	7 cut(s)	47, 90, 93, 115, 163, 280, 289
Mph1103I	ATGCAT	1 cut(s)	196
MseI	TTAA	2 cut(s)	45, 312
MspA1I	CMGCKG	1 cut(s)	262
MspI	CCGG	1 cut(s)	51
NdeII	GATC	2 cut(s)	143, 300
NlaIII	CATG	2 cut(s)	194, 218
NlaIV	GGNNCC	2 cut(s)	58, 267
NmuCI	GTSAC	1 cut(s)	4
NsiI	ATGCAT	1 cut(s)	196
PagI	TCATGA	1 cut(s)	214
PcsI	WCGNNNNNNNCGW	2 cut(s)	152, 155
PfeI	GAWTC	1 cut(s)	125
PkrI	GCNGC	1 cut(s)	361
PleI	GAGTC	2 cut(s)	208, 236
PpsI	GAGTC	2 cut(s)	208, 236
PshAI	GACNNNNGTC	1 cut(s)	333
Psp124BI	GAGCTC	1 cut(s)	119
PspN4I	GGNNCC	2 cut(s)	58, 267
PsuI	RGATCY	1 cut(s)	300
SacI	GAGCTC	1 cut(s)	119
SalI	GTCGAC	1 cut(s)	67
SaqAI	TTAA	2 cut(s)	45, 312
SatI	GCNGC	1 cut(s)	360
Sau3AI	GATC	2 cut(s)	143, 300
SchI	GAGTC	2 cut(s)	209, 237
SduI	GDGCHC	1 cut(s)	119
SetI	ASST	8 cut(s)	58, 114, 119, 213, 226, 319, 349, 364
Sse9I	AATT	1 cut(s)	283
SsiI	CCGC	3 cut(s)	92, 141, 262
SspMI	CTAG	3 cut(s)	206, 225, 318
SstI	GAGCTC	1 cut(s)	119
TaaI	ACNGT	1 cut(s)	10
TaqI	TCGA	1 cut(s)	68
TasI	AATT	1 cut(s)	283
TfiI	GAWTC	1 cut(s)	125
Tru1I	TTAA	2 cut(s)	45, 312
Tru9I	TTAA	2 cut(s)	45, 312
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	1 cut(s)	359
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	2 cut(s)	203, 231
XbaI	TCTAGA	1 cut(s)	205
XmiI	GTMKAC	1 cut(s)	68
XspI	CTAG	3 cut(s)	206, 225, 318
Zsp2I	ATGCAT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.