Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0007934

Physical Location & Seq

Genomic Coordinates Forward (+)

15431972 .. 15435014

Gene Structure 3043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCCGATTCATCTTCGTCTCCTTCACTGTCCTTCGTTACAAAGCATTGGGAGGGTTACAAGGATTTCTGGTGCGAGCGATTCTCCTTCCTCAACAACTACTCCAAGTTCGTCAAGCGGGACAAGCCCCTCCATTCCTGGTCCGACTCCGACGTCGAAGCCTTCATTGCTCTCGACCCTGTCAATGGCCCCGCTCTGAAGACTGCTAGGGAAGCAGTGAACTTTGGTCTTACAGGAAGCGTTATTGGAGCGGTATCAACTGCTGGCTTTGCGTGGAAATATTCAAGGAGTTTACATGGTGCTGGACTGTCCCTTCTAGCTGGAGGTGTTTTTGGCTGGACATTTGGACAGGAAGTTGCAAATCACTGGCTGCAACTCTACAGGTTCGACACCTTGGCTGCACAAACCAAGTTCCTTGAGTGGTGGCAAGAAAAGAACGAGAGACGATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005749 GO:0005773 GO:0005774 GO:0009536 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045257 GO:0045273 GO:0045281 GO:0045283 GO:0070469 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rick_17kDa_Anti

Protein Analysis

151

Amino Acids

16.95

Weight (kDa)

7.88

Isoelectric Point (pI)

33.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08480
fragaria_vesca	FvH4_3g26740 FvH4_5g32770
malus_domestica	MD03G1160100.v1.1 MD11G1175100.v1.1
prunus_persica	Prupe.6G148300_v2.0.a1 Prupe.6G148300_v2.0.a1
pyrus_communis	pycom03g11260 pycom11g15020
rosa_chinensis	RchiOBHm_Chr5g0049161 RchiOBHm_Chr7g0230441
rosa_laevigata	RLG00000001494 RLG00000034595
rosa_multiflora	Rmu_sc0001677.1_g000026 Rmu_sc0002541.1_g000026 Rmu_sc0007103.1_g000012
rosa_roxburghii	Rroxscaffold_1G00032570
rosa_rugosa	Rorug05G0244500 Rorug07G0260600
rosa_samantha	Rh5CG358700 Rh5DG345100 Rh7DG407800
rosa_wichuraiana	Rw5G030490 Rw7G034130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	152
AatII	GACGTC	1 cut(s)	156
AccBSI	CCGCTC	2 cut(s)	194, 251
AciI	CCGC	3 cut(s)	118, 192, 251
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	218
AcyI	GRCGYC	1 cut(s)	153
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	1 cut(s)	285
AjnI	CCWGG	1 cut(s)	137
AluBI	AGCT	1 cut(s)	320
AluI	AGCT	1 cut(s)	320
Alw26I	GTCTC	2 cut(s)	24, 436
AoxI	GGCC	2 cut(s)	3, 187
ApeKI	GCWGC	2 cut(s)	370, 398
AspS9I	GGNCC	2 cut(s)	141, 188
AvaII	GGWCC	1 cut(s)	141
BbsI	GAAGAC	1 cut(s)	206
BbvI	GCAGC	2 cut(s)	357, 385
BciT130I	CCWGG	1 cut(s)	139
BcoDI	GTCTC	2 cut(s)	24, 436
BfaI	CTAG	2 cut(s)	207, 317
BfmI	CTRYAG	1 cut(s)	379
BisI	GCNGC	2 cut(s)	371, 399
BlsI	GCNGC	2 cut(s)	372, 400
Bme1390I	CCNGG	1 cut(s)	139
Bme18I	GGWCC	1 cut(s)	141
BmgT120I	GGNCC	2 cut(s)	141, 188
BmiI	GGNNCC	1 cut(s)	190
BmrFI	CCNGG	1 cut(s)	139
BpiI	GAAGAC	1 cut(s)	206
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
BpmI	CTGGAG	1 cut(s)	342
BpuEI	CTTGAG	1 cut(s)	437
BsaHI	GRCGYC	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	393
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse1I	ACTGG	1 cut(s)	371
Bse3DI	GCAATG	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	139
BseDI	CCNNGG	1 cut(s)	393
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMI	GCAATG	1 cut(s)	165
BseNI	ACTGG	1 cut(s)	371
BseXI	GCAGC	2 cut(s)	357, 385
BsgI	GTGCAG	1 cut(s)	384
BshFI	GGCC	2 cut(s)	5, 189
BslFI	GGGAC	2 cut(s)	134, 295
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmAI	GTCTC	2 cut(s)	24, 436
BsmBI	CGTCTC	2 cut(s)	24, 436
BsmFI	GGGAC	2 cut(s)	134, 295
BsnI	GGCC	2 cut(s)	5, 189
Bsp143I	GATC	1 cut(s)	446
BspACI	CCGC	3 cut(s)	118, 192, 251
BspANI	GGCC	2 cut(s)	5, 189
BspLI	GGNNCC	1 cut(s)	190
BsrBI	CCGCTC	2 cut(s)	194, 251
BsrDI	GCAATG	1 cut(s)	165
BsrI	ACTGG	1 cut(s)	371
BssECI	CCNNGG	1 cut(s)	393
BssMI	GATC	1 cut(s)	446
BssNI	GRCGYC	1 cut(s)	153
BssT1I	CCWWGG	1 cut(s)	393
Bst2UI	CCWGG	1 cut(s)	139
Bst4CI	ACNGT	2 cut(s)	30, 309
BstACI	GRCGYC	1 cut(s)	153
BstC8I	GCNNGC	2 cut(s)	77, 265
BstKTI	GATC	1 cut(s)	449
BstMAI	GTCTC	2 cut(s)	24, 436
BstMBI	GATC	1 cut(s)	446
BstMWI	GCNNNNNNNGC	4 cut(s)	124, 167, 212, 269
BstNI	CCWGG	1 cut(s)	139
BstSCI	CCNGG	1 cut(s)	137
BstSFI	CTRYAG	1 cut(s)	379
BstV1I	GCAGC	2 cut(s)	357, 385
BstV2I	GAAGAC	1 cut(s)	206
BsuRI	GGCC	2 cut(s)	5, 189
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	3 cut(s)	26, 222, 364
Cac8I	GCNNGC	2 cut(s)	77, 265
Cfr13I	GGNCC	2 cut(s)	141, 188
CviAII	CATG	1 cut(s)	296
CviJI	RGCY	9 cut(s)	5, 127, 161, 189, 267, 320, 336, 370, 398
CviKI_1	RGCY	9 cut(s)	5, 127, 161, 189, 267, 320, 336, 370, 398
DpnI	GATC	1 cut(s)	448
DpnII	GATC	1 cut(s)	446
DrdI	GACNNNNNNGTC	1 cut(s)	152
DseDI	GACNNNNNNGTC	1 cut(s)	152
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	393
Eco47I	GGWCC	1 cut(s)	141
Eco57I	CTGAAG	1 cut(s)	218
EcoRII	CCWGG	1 cut(s)	137
EcoT14I	CCWWGG	1 cut(s)	393
ErhI	CCWWGG	1 cut(s)	393
Esp3I	CGTCTC	2 cut(s)	24, 436
FaeI	CATG	1 cut(s)	299
FaiI	YATR	1 cut(s)	297
FaqI	GGGAC	2 cut(s)	134, 295
FatI	CATG	1 cut(s)	295
FauI	CCCGC	2 cut(s)	111, 199
Fnu4HI	GCNGC	2 cut(s)	371, 399
Fsp4HI	GCNGC	2 cut(s)	371, 399
FspBI	CTAG	2 cut(s)	207, 317
GluI	GCNGC	2 cut(s)	371, 399
GsuI	CTGGAG	1 cut(s)	342
HaeIII	GGCC	2 cut(s)	5, 189
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	1 cut(s)	299
HinfI	GANTC	3 cut(s)	8, 81, 146
Hpy166II	GTNNAC	2 cut(s)	220, 293
Hpy188I	TCNGA	3 cut(s)	145, 151, 198
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	2 cut(s)	220, 293
Hpy99I	CGWCG	2 cut(s)	155, 158
HpyAV	CCTTC	5 cut(s)	33, 43, 97, 172, 323
HpyCH4III	ACNGT	2 cut(s)	30, 309
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	3 cut(s)	359, 373, 401
HpyF10VI	GCNNNNNNNGC	4 cut(s)	124, 167, 212, 269
HpySE526I	ACGT	1 cut(s)	153
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	1 cut(s)	299
Kzo9I	GATC	1 cut(s)	446
LmnI	GCTCC	1 cut(s)	248
Lsp1109I	GCAGC	2 cut(s)	357, 385
MaeI	CTAG	2 cut(s)	207, 317
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	2 cut(s)	37, 56
MalI	GATC	1 cut(s)	448
MbiI	CCGCTC	2 cut(s)	194, 251
MboI	GATC	1 cut(s)	446
MboII	GAAGA	2 cut(s)	6, 211
MlyI	GAGTC	1 cut(s)	140
MmeI	TCCRAC	2 cut(s)	168, 174
MnlI	CCTC	4 cut(s)	46, 101, 140, 317
MseI	TTAA	1 cut(s)	451
MspR9I	CCNGG	1 cut(s)	139
MvaI	CCWGG	1 cut(s)	139
MwoI	GCNNNNNNNGC	4 cut(s)	124, 167, 212, 269
NdeII	GATC	1 cut(s)	446
NlaIII	CATG	1 cut(s)	299
NlaIV	GGNNCC	1 cut(s)	190
PfeI	GAWTC	2 cut(s)	8, 81
PflFI	GACNNNGTC	1 cut(s)	179
PkrI	GCNGC	2 cut(s)	372, 400
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
Psp6I	CCWGG	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	137
PspN4I	GGNNCC	1 cut(s)	190
PspPI	GGNCC	2 cut(s)	141, 188
PsyI	GACNNNGTC	1 cut(s)	179
SaqAI	TTAA	1 cut(s)	451
SatI	GCNGC	2 cut(s)	371, 399
Sau3AI	GATC	1 cut(s)	446
Sau96I	GGNCC	2 cut(s)	141, 188
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	1 cut(s)	139
SetI	ASST	5 cut(s)	156, 322, 328, 386, 395
SfcI	CTRYAG	1 cut(s)	379
SinI	GGWCC	1 cut(s)	141
SmlI	CTYRAG	1 cut(s)	416
SmoI	CTYRAG	1 cut(s)	416
SsiI	CCGC	3 cut(s)	118, 192, 251
SspI	AATATT	1 cut(s)	281
SspMI	CTAG	2 cut(s)	207, 317
StyD4I	CCNGG	1 cut(s)	137
StyI	CCWWGG	1 cut(s)	393
TaaI	ACNGT	2 cut(s)	30, 309
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	3 cut(s)	156, 174, 387
TfiI	GAWTC	2 cut(s)	8, 81
Tru1I	TTAA	1 cut(s)	451
Tru9I	TTAA	1 cut(s)	451
TscAI	CASTG	3 cut(s)	33, 222, 371
TseI	GCWGC	2 cut(s)	370, 398
TspDTI	ATGAA	1 cut(s)	154
TspRI	CASTG	3 cut(s)	33, 222, 371
Tth111I	GACNNNGTC	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	141
XspI	CTAG	2 cut(s)	207, 317
ZraI	GACGTC	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.