pycom11g17300

DEK C terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0010234
Physical Location & Seq
Reverse (-)
19475721 .. 19481839
6119 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2001 bp
ATGGGTGAAGAAGACACGGTGGCCAATGACACTGAAATAGTGGCAAATGGGACTAGCCAGTTAGGGAAAACCAGCAAAGATGCGACTTTGAAAAAAGGGGACGAAAAGGTTGAGGTAAAAGAAATAGATGTATATAAGAAAGGTGATGAGAAAGATGAAGCAGAGAAAAAGAATGAAGGCCAAGAGACCGATGGAAGCAAAGATGAAAAAGTGAAAGAAAAAGCAGAGGAACCCAAGGTTGGGGAAATAAAAGAGGAAATTGGTCCAAATGAAGTTAAGAAAGATGATGAGAATGCTCTAGTTGAGAATGGAAGCAAAGGTGAAAAGGTGAAAGAAACAGAGGAACCCAAAGTTGAGGAAAAAGAAGAAGAAACTGCTCCAAATGAAAAGGTGGAGACTGAAGAAAAGAAGCAAATTGAAGTGGAAGAAGAGAAGGTGGATGGGCTTCAGGTGGAGGAAGAGAAGGAAAAAGTGAAGGTAGAAGACAAGGAAGAAGATAAGGAAGAAGAGAAGGAAGAGGATAAGGAAGAAGAGAAGGAAGAAGAGATGGAAGAAGAGAAAGAAGAAGAAGCTAAGATGGAGAAAGGGTCGAGGAAGCGTGGAAAAGGAAAAAGTGCGGAGAAAACCAAAGAGAAGAAAAGGAAAGTTGCAGAAAAGAAGGAGCCAGAGCAAAGGACTCCCGCTATTGATCGCCCTGTTCGTGAGCGGAAATCAGTTGAAAGGCTGGTGGCAACTATTGAAAAGGATAATGCCAGGGAATTCCATATAGAGAAGGGACGCGGTACACCATTGAAAGACATACCTAATGTGGCTTTCAAGTTGTCAAGAAGGAAAATCGATGATAACTTAAAGCTACTTCATACCATTCTTTTTGGAAGGAGAGGAAAGGCACTTGAGGTCAAGAGTAATATATCCAGGTTCTCTGGATTTGTGTGGCGTGGAAATGAGGACAAGCAAAATACTAAAGTAAAAGAAAAACTTGACAAGTGCAATAAAGAGAAGTTATTGGACTTCTGTGATCTGCTCAATGTATCAGTTTCCAAAGCTACTACTAGGAAGGAGGATATAGTTGCAAAGCTTATCGAGTTTTTGGTGGCTCCTCATGCTACAAGTGATGTCCTCCTCGCAGAAAAAGAGACGCCAACTAAGGGCAAAAAGCGCAAGAGGGCAACCAAAGGAAGTCCTTCAACCTCTGGGGGCACAAGTTCAAAGCGCTCGGCAAAGAGTCGTAGAAAGAATGATGATGATTCAAAATTGGAGGACAAGAGTACACCAGATACAGAAGATGAGTCGGTGGAAGATGTAAAAGAAGAAGAAGAAAATGATGAAGACGAAAATGAAAATGGCATTCCAGAGAAGTCAGAGGATGTGATGCCTGAGCATTCAGAAAGTGAGGAGAAACATGATTCTTCCGATGATACTGACAAAGAAGTGATAAAAAGGAAGCCACGGTCAAAATCATTGTCATCCAGAAAGAAGGAATCTTCTGGAAAAGCTAGAACAAAAAAATCTCCAGTTTCTGCTAAGTCTACTCCACCACCTAGTAAAAGACAAAAGAAGTCATCATTAAAACGCACTCCAGTTGATGATGACAGTGATACGAGTCCAAAGGTATCCTCAAGGAAGAAGAAAAATGTGAAAGTGTCCAAAGCATCAACTCCAAAAAAATCTGCCTCAAAGGAAAAAACTGGGAAAAAAGTTGCTAAAGGTAAGGACAAGACCAAGGAAGAAAAATTGAGGCCAACTGATGACAATTTGAGAGATGCAATATGTCAAATTCTTAAAGAAGTTGACTTCAATACGGCTACTTTCACGGACATTCTGAAGCAACTTGCCGGGCAATTTGATGCAGATCTCAGCCTGAGAAAGTCAGCCATAAAGCTCATGATCGAGGAAGAGCTTACTAAATTGGCTGATGAGGCAGATGAAGAAGACGAAGAAGAAGGGGATGCAGAGAAAGACGAAACCCAGACTGCTAAGGAAGGGGAGGTCGAAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DEK_C

Protein Analysis

667

Amino Acids

75.24

Weight (kDa)

5.27

Isoelectric Point (pI)

50.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEK_C PF08766 581 - 634 7.6e-13 DEK C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010234)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26630 AT4G26630 AT5G55660
fragaria_vesca FvH4_3g29362
malus_domestica MD03G1183500.v1.1 MD11G1200600.v1.1
prunus_persica Prupe.4G242600_v2.0.a1
pyrus_communis pycom03g13710 pycom11g17300
rosa_chinensis RchiOBHm_Chr5g0053741
rosa_laevigata RLG00000034900
rosa_multiflora Rmu_sc0001759.1_g000043
rosa_roxburghii Rroxscaffold_1G00026850
rosa_rugosa Rorug05G0281900 Rorug05G0282000 Rorug05G0282100
rosa_samantha Rh5AG352800 Rh5BG364500 Rh5CG389400 Rh5DG379300
rosa_wichuraiana Rw5G033330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 706
AccI GTMKAC 1 cut(s) 1529
AccII CGCG 1 cut(s) 780
AciI CCGC 4 cut(s) 617, 681, 706, 780
AcoI YGGCCR 1 cut(s) 21
AcsI RAATTY 2 cut(s) 758, 1776
AcuI CTGAAG 3 cut(s) 420, 431, 1844
AcyI GRCGYC 1 cut(s) 1139
AfaI GTAC 2 cut(s) 784, 1270
AfeI AGCGCT 1 cut(s) 1214
AfiI CCNNNNNNNGG 3 cut(s) 239, 240, 1148
AjnI CCWGG 2 cut(s) 752, 914
AjuI GAANNNNNNNTTGG 2 cut(s) 222, 254
AluBI AGCT 7 cut(s) 572, 853, 1046, 1078, 1496, 1882, 1900
AluI AGCT 7 cut(s) 572, 853, 1046, 1078, 1496, 1882, 1900
Alw26I GTCTC 3 cut(s) 179, 389, 1130
AlwNI CAGNNNCTG 1 cut(s) 1520
Aor51HI AGCGCT 1 cut(s) 1214
AoxI GGCC 3 cut(s) 21, 178, 1739
ApoI RAATTY 2 cut(s) 758, 1776
ArsI GACNNNNNNTTYG 2 cut(s) 1448, 1480
Asp700I GAANNNNTTC 1 cut(s) 1183
AspLEI GCGC 2 cut(s) 1161, 1215
AspS9I GGNCC 1 cut(s) 263
AsuC2I CCSGG 1 cut(s) 1837
AsuHPI GGTGA 4 cut(s) 17, 155, 332, 340
AvaII GGWCC 1 cut(s) 263
BaeGI GKGCMC 1 cut(s) 1202
BalI TGGCCA 1 cut(s) 23
BbsI GAAGAC 4 cut(s) 18, 489, 1335, 1938
BccI CCATC 4 cut(s) 185, 434, 541, 571
BceAI ACGGC 1 cut(s) 1818
BciT130I CCWGG 2 cut(s) 754, 916
BciVI GTATCC 1 cut(s) 1624
BcnI CCSGG 1 cut(s) 1837
BcoDI GTCTC 3 cut(s) 179, 389, 1130
BfaI CTAG 5 cut(s) 54, 299, 1053, 1497, 1542
BfoI RGCGCY 1 cut(s) 1216
BfuI GTATCC 1 cut(s) 1624
BglII AGATCT 1 cut(s) 1852
Bme1390I CCNGG 3 cut(s) 754, 916, 1837
Bme18I GGWCC 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 4 cut(s) 231, 345, 663, 1098
BmrFI CCNGG 3 cut(s) 754, 916, 1837
BmrI ACTGGG 1 cut(s) 1698
BmsI GCATC 6 cut(s) 70, 1362, 1661, 1753, 1837, 1939
BmuI ACTGGG 1 cut(s) 1698
BpiI GAAGAC 4 cut(s) 18, 489, 1335, 1938
BpmI CTGGAG 2 cut(s) 1497, 1563
Bpu10I CCTNAGC 2 cut(s) 1377, 1977
BpuEI CTTGAG 2 cut(s) 914, 1603
BpuMI CCSGG 1 cut(s) 1837
Bsa29I ATCGAT 1 cut(s) 837
BsaBI GATNNNNATC 1 cut(s) 1851
BsaHI GRCGYC 1 cut(s) 1139
BsaI GGTCTC 1 cut(s) 179
BsaJI CCNNGG 4 cut(s) 234, 753, 1448, 1722
BsaXI ACNNNNNCTCC 2 cut(s) 572, 602
Bsc4I CCNNNNNNNGG 3 cut(s) 239, 240, 1148
Bse1I ACTGG 4 cut(s) 58, 1514, 1580, 1693
Bse8I GATNNNNATC 1 cut(s) 1851
BseBI CCWGG 2 cut(s) 754, 916
BseCI ATCGAT 1 cut(s) 837
BseDI CCNNGG 4 cut(s) 234, 753, 1448, 1722
BseGI GGATG 4 cut(s) 445, 1372, 1466, 1954
BseJI GATNNNNATC 1 cut(s) 1851
BseLI CCNNNNNNNGG 3 cut(s) 239, 240, 1148
BseMII CTCAG 3 cut(s) 1368, 1853, 1870
BseNI ACTGG 4 cut(s) 58, 1514, 1580, 1693
BseRI GAGGAG 3 cut(s) 1089, 1112, 1409
BseSI GKGCMC 1 cut(s) 1202
Bsh1236I CGCG 1 cut(s) 780
BshFI GGCC 3 cut(s) 23, 180, 1741
BshVI ATCGAT 1 cut(s) 837
BsiSI CCGG 1 cut(s) 1836
BslFI GGGAC 3 cut(s) 64, 113, 789
BslI CCNNNNNNNGG 3 cut(s) 239, 240, 1148
BsmAI GTCTC 3 cut(s) 179, 389, 1130
BsmBI CGTCTC 1 cut(s) 1130
BsmFI GGGAC 3 cut(s) 64, 113, 789
BsmI GAATGC 3 cut(s) 298, 1347, 1381
BsnI GGCC 3 cut(s) 23, 180, 1741
Bso31I GGTCTC 1 cut(s) 179
Bsp1286I GDGCHC 1 cut(s) 1202
Bsp143I GATC 4 cut(s) 688, 1018, 1852, 1887
BspACI CCGC 4 cut(s) 617, 681, 706, 780
BspANI GGCC 3 cut(s) 23, 180, 1741
BspCNI CTCAG 3 cut(s) 1369, 1854, 1869
BspDI ATCGAT 1 cut(s) 837
BspFNI CGCG 1 cut(s) 780
BspHI TCATGA 1 cut(s) 1884
BspLI GGNNCC 4 cut(s) 231, 345, 663, 1098
BspQI GCTCTTC 1 cut(s) 1890
BspTNI GGTCTC 1 cut(s) 179
BsrBI CCGCTC 1 cut(s) 706
BsrI ACTGG 4 cut(s) 58, 1514, 1580, 1693
BssECI CCNNGG 4 cut(s) 234, 753, 1448, 1722
BssMI GATC 4 cut(s) 688, 1018, 1852, 1887
BssNI GRCGYC 1 cut(s) 1139
BssT1I CCWWGG 2 cut(s) 234, 1722
Bst2UI CCWGG 2 cut(s) 754, 916
Bst4CI ACNGT 3 cut(s) 19, 1452, 1595
Bst6I CTCTTC 8 cut(s) 423, 453, 501, 510, 525, 537, 549, 1890
BstACI GRCGYC 1 cut(s) 1139
BstDEI CTNAG 7 cut(s) 573, 1146, 1377, 1524, 1856, 1862, 1977
BstDSI CCRYGG 1 cut(s) 1448
BstF5I GGATG 4 cut(s) 445, 1372, 1466, 1954
BstFNI CGCG 1 cut(s) 780
BstH2I RGCGCY 1 cut(s) 1216
BstHHI GCGC 2 cut(s) 1161, 1215
BstKTI GATC 4 cut(s) 691, 1021, 1855, 1890
BstMAI GTCTC 3 cut(s) 179, 389, 1130
BstMBI GATC 4 cut(s) 688, 1018, 1852, 1887
BstMWI GCNNNNNNNGC 3 cut(s) 1103, 1158, 1919
BstNI CCWGG 2 cut(s) 754, 916
BstSCI CCNGG 3 cut(s) 752, 914, 1835
BstSLI GKGCMC 1 cut(s) 1202
BstUI CGCG 1 cut(s) 780
BstV2I GAAGAC 4 cut(s) 18, 489, 1335, 1938
BstX2I RGATCY 1 cut(s) 1852
BstYI RGATCY 1 cut(s) 1852
Bsu15I ATCGAT 1 cut(s) 837
BsuI GTATCC 1 cut(s) 1624
BsuRI GGCC 3 cut(s) 23, 180, 1741
BsuTUI ATCGAT 1 cut(s) 837
BtgI CCRYGG 1 cut(s) 1448
BtsCI GGATG 4 cut(s) 445, 1372, 1466, 1954
BtsIMutI CAGTG 2 cut(s) 30, 1600
CaiI CAGNNNCTG 1 cut(s) 1520
CciI TCATGA 1 cut(s) 1884
CfoI GCGC 2 cut(s) 1161, 1215
Cfr13I GGNCC 1 cut(s) 263
ClaI ATCGAT 1 cut(s) 837
CseI GACGC 2 cut(s) 786, 1147
Csp6I GTAC 2 cut(s) 783, 1269
CviAII CATG 3 cut(s) 1103, 1403, 1885
CviQI GTAC 2 cut(s) 783, 1269
DdeI CTNAG 7 cut(s) 573, 1146, 1377, 1524, 1856, 1862, 1977
DpnI GATC 4 cut(s) 690, 1020, 1854, 1889
DpnII GATC 4 cut(s) 688, 1018, 1852, 1887
EaeI YGGCCR 1 cut(s) 21
Eam1104I CTCTTC 8 cut(s) 423, 453, 501, 510, 525, 537, 549, 1890
EarI CTCTTC 8 cut(s) 423, 453, 501, 510, 525, 537, 549, 1890
Eco130I CCWWGG 2 cut(s) 234, 1722
Eco31I GGTCTC 1 cut(s) 179
Eco47I GGWCC 1 cut(s) 263
Eco47III AGCGCT 1 cut(s) 1214
Eco57I CTGAAG 3 cut(s) 420, 431, 1844
EcoRI GAATTC 1 cut(s) 758
EcoRII CCWGG 2 cut(s) 752, 914
EcoT14I CCWWGG 2 cut(s) 234, 1722
ErhI CCWWGG 2 cut(s) 234, 1722
Esp3I CGTCTC 1 cut(s) 1130
FaeI CATG 3 cut(s) 1106, 1406, 1888
FalI AAGNNNNNCTT 2 cut(s) 963, 995
FaqI GGGAC 3 cut(s) 64, 113, 789
FatI CATG 3 cut(s) 1102, 1402, 1884
FauI CCCGC 1 cut(s) 688
FblI GTMKAC 1 cut(s) 1529
FokI GGATG 4 cut(s) 452, 1379, 1453, 1961
FspBI CTAG 5 cut(s) 54, 299, 1053, 1497, 1542
GlaI GCGC 2 cut(s) 1160, 1214
GsuI CTGGAG 2 cut(s) 1497, 1563
HaeII RGCGCY 1 cut(s) 1216
HaeIII GGCC 3 cut(s) 23, 180, 1741
HapII CCGG 1 cut(s) 1836
HgaI GACGC 2 cut(s) 786, 1147
HhaI GCGC 2 cut(s) 1161, 1215
Hin1I GRCGYC 1 cut(s) 1139
Hin1II CATG 3 cut(s) 1106, 1406, 1888
Hin6I GCGC 2 cut(s) 1159, 1213
HinP1I GCGC 2 cut(s) 1159, 1213
HincII GTYRAC 1 cut(s) 1792
HindII GTYRAC 1 cut(s) 1792
HindIII AAGCTT 1 cut(s) 1076
HinfI GANTC 7 cut(s) 676, 1225, 1247, 1289, 1406, 1481, 1603
HpaII CCGG 1 cut(s) 1836
HphI GGTGA 4 cut(s) 17, 155, 332, 340
Hpy166II GTNNAC 4 cut(s) 785, 1271, 1530, 1792
Hpy188I TCNGA 4 cut(s) 1363, 1387, 1414, 1824
Hpy188III TCNNGA 8 cut(s) 701, 825, 901, 924, 1352, 1470, 1488, 1885
Hpy8I GTNNAC 4 cut(s) 785, 1271, 1530, 1792
HpyCH4III ACNGT 3 cut(s) 19, 1452, 1595
HpyCH4V TGCA 6 cut(s) 650, 990, 1073, 1766, 1850, 1952
HpyF10VI GCNNNNNNNGC 3 cut(s) 1103, 1158, 1919
HpyF3I CTNAG 7 cut(s) 573, 1146, 1377, 1524, 1856, 1862, 1977
Hsp92I GRCGYC 1 cut(s) 1139
Hsp92II CATG 3 cut(s) 1106, 1406, 1888
HspAI GCGC 2 cut(s) 1159, 1213
Kzo9I GATC 4 cut(s) 688, 1018, 1852, 1887
LguI GCTCTTC 1 cut(s) 1890
LmnI GCTCC 3 cut(s) 382, 661, 1102
LweI GCATC 6 cut(s) 70, 1362, 1661, 1753, 1837, 1939
MaeI CTAG 5 cut(s) 54, 299, 1053, 1497, 1542
MalI GATC 4 cut(s) 690, 1020, 1854, 1889
MbiI CCGCTC 1 cut(s) 706
MboI GATC 4 cut(s) 688, 1018, 1852, 1887
MflI RGATCY 1 cut(s) 1852
MhlI GDGCHC 1 cut(s) 1202
MlsI TGGCCA 1 cut(s) 23
MluCI AATT 9 cut(s) 258, 414, 758, 1253, 1733, 1753, 1776, 1841, 1907
MluNI TGGCCA 1 cut(s) 23
MlyI GAGTC 4 cut(s) 670, 1234, 1298, 1612
Mox20I TGGCCA 1 cut(s) 23
MroXI GAANNNNTTC 1 cut(s) 1183
MscI TGGCCA 1 cut(s) 23
MseI TTAA 4 cut(s) 276, 848, 1568, 1782
Msp20I TGGCCA 1 cut(s) 23
MspI CCGG 1 cut(s) 1836
MspR9I CCNGG 3 cut(s) 754, 916, 1837
Mva1269I GAATGC 3 cut(s) 298, 1347, 1381
MvaI CCWGG 2 cut(s) 754, 916
MvnI CGCG 1 cut(s) 780
MwoI GCNNNNNNNGC 3 cut(s) 1103, 1158, 1919
NciI CCSGG 1 cut(s) 1837
NdeII GATC 4 cut(s) 688, 1018, 1852, 1887
NlaIII CATG 3 cut(s) 1106, 1406, 1888
NlaIV GGNNCC 4 cut(s) 231, 345, 663, 1098
NmeAIII GCCGAG 1 cut(s) 1196
PagI TCATGA 1 cut(s) 1884
PciSI GCTCTTC 1 cut(s) 1890
PcsI WCGNNNNNNNCGW 1 cut(s) 697
PctI GAATGC 3 cut(s) 298, 1347, 1381
PdmI GAANNNNTTC 1 cut(s) 1183
PfeI GAWTC 3 cut(s) 1247, 1406, 1481
PleI GAGTC 4 cut(s) 670, 1233, 1297, 1611
PpsI GAGTC 4 cut(s) 670, 1233, 1297, 1611
Psp6I CCWGG 2 cut(s) 752, 914
PspGI CCWGG 2 cut(s) 752, 914
PspN4I GGNNCC 4 cut(s) 231, 345, 663, 1098
PspPI GGNCC 1 cut(s) 263
PstNI CAGNNNCTG 1 cut(s) 1520
PsuI RGATCY 1 cut(s) 1852
RsaI GTAC 2 cut(s) 784, 1270
RsaNI GTAC 2 cut(s) 783, 1269
SapI GCTCTTC 1 cut(s) 1890
SaqAI TTAA 4 cut(s) 276, 848, 1568, 1782
Sau3AI GATC 4 cut(s) 688, 1018, 1852, 1887
Sau96I GGNCC 1 cut(s) 263
SchI GAGTC 4 cut(s) 670, 1234, 1298, 1612
ScrFI CCNGG 3 cut(s) 754, 916, 1837
SduI GDGCHC 1 cut(s) 1202
SfaNI GCATC 6 cut(s) 70, 1362, 1661, 1753, 1837, 1939
SinI GGWCC 1 cut(s) 263
SmlI CTYRAG 2 cut(s) 893, 1618
SmoI CTYRAG 2 cut(s) 893, 1618
Sse9I AATT 9 cut(s) 258, 414, 758, 1253, 1733, 1753, 1776, 1841, 1907
SsiI CCGC 4 cut(s) 617, 681, 706, 780
SspMI CTAG 5 cut(s) 54, 299, 1053, 1497, 1542
StyD4I CCNGG 3 cut(s) 752, 914, 1835
StyI CCWWGG 2 cut(s) 234, 1722
TaaI ACNGT 3 cut(s) 19, 1452, 1595
TaqI TCGA 5 cut(s) 590, 837, 1083, 1890, 1992
TaqII GACCGA 1 cut(s) 203
TasI AATT 9 cut(s) 258, 414, 758, 1253, 1733, 1753, 1776, 1841, 1907
TatI WGTACW 1 cut(s) 1268
TfiI GAWTC 3 cut(s) 1247, 1406, 1481
Tru1I TTAA 4 cut(s) 276, 848, 1568, 1782
Tru9I TTAA 4 cut(s) 276, 848, 1568, 1782
TscAI CASTG 2 cut(s) 37, 1600
TspDTI ATGAA 9 cut(s) 171, 189, 219, 285, 399, 848, 1341, 1353, 1941
TspGWI ACGGA 1 cut(s) 1829
TspRI CASTG 2 cut(s) 37, 1600
VpaK11BI GGWCC 1 cut(s) 263
XapI RAATTY 2 cut(s) 758, 1776
XcmI CCANNNNNNNNNTGG 1 cut(s) 188
XmiI GTMKAC 1 cut(s) 1529
XmnI GAANNNNTTC 1 cut(s) 1183
XspI CTAG 5 cut(s) 54, 299, 1053, 1497, 1542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.