Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0006616

Physical Location & Seq

Genomic Coordinates Forward (+)

21442462 .. 21444423

Gene Structure 1962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCGTGGTGTGCGGCGAGGAGCCTTCACATGCCGGCGGTCGACATGGGCGCATTGCGCACCCGTGCTCCTTTAGCCGCCGTCGGGGGCTTTGCCTCGGTAGCTGGCTCCACTTTCTGTCGACCTTTGGCTTCATCGAAGCCCTCCTCCCGCTTCGCTTGCTCAGCCATTTCCACCGACGCTCGAATTAAGGAAGCTGTTCTCACAGACAGGGCTCCGGCTGCATTGGGCCCGTATTCTCAGGCAATCAAAGTCGACAACTTTGTCCATTTGTCGGGTTGTCTTGGTCTGATTCCTGAGACAGGGAAGTTTGTGTCGGATAATGTTGTAGATCAGACAGAGCAGGTTCTGAAAAATATGGGGGAAATACTGAAAGCAAGCGGGGCCAGCTATTCCTCTGTGGTTGAAACGACTATTCTGTTGGCTGATTGGAACAACTTCAAGAAAGTCAATGAAATCTATGCTAAATATTTTCCATCTCCAGCCCCAGCACAATGCGTATTATATCTGAAACTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0016053 GO:0016787 GO:0019239 GO:0019752 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046686 GO:0050896 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuc_L-PSP

Protein Analysis

174

Amino Acids

18.4

Weight (kDa)

8.84

Isoelectric Point (pI)

37.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuc_L-PSP	PF01042	70 - 167	3.5e-30	Endoribonuclease L-PSP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20390 AT3G20390
fragaria_vesca	FvH4_3g22680
malus_domestica	MD03G1200800.v1.1 MD11G1217800.v1.1 MD11G1218500.v1.1
prunus_persica	Prupe.4G213500_v2.0.a1 Prupe.4G213500_v2.0.a1
pyrus_communis	pycom03g15230 pycom11g19160 pycom11g19180 pycom11g19200
rosa_chinensis	RchiOBHm_Chr5g0039491
rosa_laevigata	RLG00000033922
rosa_multiflora	Rmu_sc0001204.1_g000001 Rmu_ssc0000400.1_g000035
rosa_roxburghii	Rroxscaffold_1G00040710 Rroxscaffold_1G00041660
rosa_rugosa	Rorug05G0179900 Rorug05G0180000
rosa_samantha	Rh5AG267100 Rh5BG271300 Rh5CG303900 Rh5DG278800
rosa_wichuraiana	Rw0G005700 Rw5G024960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
Acc16I	TGCGCA	1 cut(s)	59
Acc36I	ACCTGC	1 cut(s)	334
AccI	GTMKAC	3 cut(s)	42, 121, 255
AciI	CCGC	5 cut(s)	14, 38, 78, 151, 381
AfiI	CCNNNNNNNGG	3 cut(s)	84, 274, 302
AgsI	TTSAA	2 cut(s)	407, 442
AluBI	AGCT	3 cut(s)	104, 197, 390
AluI	AGCT	3 cut(s)	104, 197, 390
Alw21I	GWGCWC	1 cut(s)	70
Alw26I	GTCTC	1 cut(s)	293
AlwNI	CAGNNNCTG	1 cut(s)	349
AoxI	GGCC	2 cut(s)	229, 384
ApaI	GGGCCC	1 cut(s)	233
ApeKI	GCWGC	1 cut(s)	221
Asp700I	GAANNNNTTC	2 cut(s)	198, 437
AspLEI	GCGC	2 cut(s)	53, 60
AspS9I	GGNCC	3 cut(s)	229, 230, 384
BaeGI	GKGCMC	1 cut(s)	233
BanII	GRGCYC	2 cut(s)	217, 233
Bbv12I	GWGCWC	1 cut(s)	70
BbvI	GCAGC	1 cut(s)	208
BccI	CCATC	1 cut(s)	484
BceAI	ACGGC	1 cut(s)	65
BcoDI	GTCTC	1 cut(s)	293
BfuAI	ACCTGC	1 cut(s)	334
BisI	GCNGC	3 cut(s)	15, 78, 222
BlpI	GCTNAGC	1 cut(s)	163
BlsI	GCNGC	3 cut(s)	16, 79, 223
BmgT120I	GGNCC	3 cut(s)	229, 230, 384
BmiI	GGNNCC	5 cut(s)	23, 109, 216, 231, 385
BpmI	CTGGAG	1 cut(s)	465
Bpu1102I	GCTNAGC	1 cut(s)	163
BsaJI	CCNNGG	1 cut(s)	96
BsaXI	ACNNNNNCTCC	2 cut(s)	52, 82
Bsc4I	CCNNNNNNNGG	3 cut(s)	84, 274, 302
Bse118I	RCCGGY	1 cut(s)	34
Bse3DI	GCAATG	1 cut(s)	53
BseDI	CCNNGG	1 cut(s)	96
BseLI	CCNNNNNNNGG	3 cut(s)	84, 274, 302
BseMI	GCAATG	1 cut(s)	53
BseMII	CTCAG	3 cut(s)	177, 254, 288
BseRI	GAGGAG	2 cut(s)	34, 136
BseSI	GKGCMC	1 cut(s)	233
BseXI	GCAGC	1 cut(s)	208
BseYI	CCCAGC	1 cut(s)	487
Bsh1285I	CGRYCG	1 cut(s)	42
BshFI	GGCC	2 cut(s)	231, 386
BsiEI	CGRYCG	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	70
BsiSI	CCGG	2 cut(s)	35, 218
BslI	CCNNNNNNNGG	3 cut(s)	84, 274, 302
BsmAI	GTCTC	1 cut(s)	293
BsnI	GGCC	2 cut(s)	231, 386
Bsp120I	GGGCCC	1 cut(s)	229
Bsp1286I	GDGCHC	3 cut(s)	70, 217, 233
Bsp143I	GATC	1 cut(s)	331
Bsp1720I	GCTNAGC	1 cut(s)	163
BspACI	CCGC	5 cut(s)	14, 38, 78, 151, 381
BspANI	GGCC	2 cut(s)	231, 386
BspCNI	CTCAG	3 cut(s)	176, 253, 289
BspLI	GGNNCC	5 cut(s)	23, 109, 216, 231, 385
BspMI	ACCTGC	1 cut(s)	334
BsrDI	GCAATG	1 cut(s)	53
BsrFI	RCCGGY	1 cut(s)	34
BssAI	RCCGGY	1 cut(s)	34
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	1 cut(s)	331
BstC8I	GCNNGC	5 cut(s)	36, 106, 160, 379, 388
BstDEI	CTNAG	3 cut(s)	163, 240, 297
BstENI	CCTNNNNNAGG	1 cut(s)	300
BstHHI	GCGC	2 cut(s)	53, 60
BstKTI	GATC	1 cut(s)	334
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	1 cut(s)	331
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 57, 74, 101, 159, 164, 221, 383, 387
BstNSI	RCATGY	1 cut(s)	34
BstSLI	GKGCMC	1 cut(s)	233
BstV1I	GCAGC	1 cut(s)	208
BsuRI	GGCC	2 cut(s)	231, 386
BveI	ACCTGC	1 cut(s)	334
Cac8I	GCNNGC	5 cut(s)	36, 106, 160, 379, 388
CaiI	CAGNNNCTG	1 cut(s)	349
CfoI	GCGC	2 cut(s)	53, 60
Cfr10I	RCCGGY	1 cut(s)	34
Cfr13I	GGNCC	3 cut(s)	229, 230, 384
CseI	GACGC	1 cut(s)	188
CviAII	CATG	2 cut(s)	31, 46
DdeI	CTNAG	3 cut(s)	163, 240, 297
DpnI	GATC	1 cut(s)	333
DpnII	GATC	1 cut(s)	331
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
Eco24I	GRGCYC	2 cut(s)	217, 233
EcoNI	CCTNNNNNAGG	1 cut(s)	300
EcoT38I	GRGCYC	2 cut(s)	217, 233
FaeI	CATG	2 cut(s)	34, 49
FaiI	YATR	5 cut(s)	32, 47, 359, 462, 505
FatI	CATG	2 cut(s)	30, 45
FauI	CCCGC	2 cut(s)	158, 374
FblI	GTMKAC	3 cut(s)	42, 121, 255
Fnu4HI	GCNGC	3 cut(s)	15, 78, 222
FriOI	GRGCYC	2 cut(s)	217, 233
Fsp4HI	GCNGC	3 cut(s)	15, 78, 222
FspI	TGCGCA	1 cut(s)	59
GlaI	GCGC	2 cut(s)	52, 59
GluI	GCNGC	3 cut(s)	15, 78, 222
GsaI	CCCAGC	1 cut(s)	491
GsuI	CTGGAG	1 cut(s)	465
HaeIII	GGCC	2 cut(s)	231, 386
HapII	CCGG	2 cut(s)	35, 218
HgaI	GACGC	1 cut(s)	188
HhaI	GCGC	2 cut(s)	53, 60
Hin1II	CATG	2 cut(s)	34, 49
Hin6I	GCGC	2 cut(s)	51, 58
HinP1I	GCGC	2 cut(s)	51, 58
HincII	GTYRAC	3 cut(s)	43, 122, 256
HindII	GTYRAC	3 cut(s)	43, 122, 256
HinfI	GANTC	1 cut(s)	292
HpaII	CCGG	2 cut(s)	35, 218
Hpy166II	GTNNAC	3 cut(s)	43, 122, 256
Hpy188I	TCNGA	5 cut(s)	291, 319, 336, 351, 510
Hpy188III	TCNNGA	2 cut(s)	296, 442
Hpy8I	GTNNAC	3 cut(s)	43, 122, 256
Hpy99I	CGWCG	2 cut(s)	86, 182
HpyAV	CCTTC	1 cut(s)	35
HpyCH4V	TGCA	1 cut(s)	224
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 57, 74, 101, 159, 164, 221, 383, 387
HpyF3I	CTNAG	3 cut(s)	163, 240, 297
Hsp92II	CATG	2 cut(s)	34, 49
HspAI	GCGC	2 cut(s)	51, 58
KroI	GCCGGC	1 cut(s)	34
KroNI	GCCGGC	1 cut(s)	36
Kzo9I	GATC	1 cut(s)	331
LmnI	GCTCC	4 cut(s)	21, 73, 113, 220
Lsp1109I	GCAGC	1 cut(s)	208
MalI	GATC	1 cut(s)	333
MboI	GATC	1 cut(s)	331
MhlI	GDGCHC	3 cut(s)	70, 217, 233
MluCI	AATT	1 cut(s)	186
MmeI	TCCRAC	1 cut(s)	297
MnlI	CCTC	5 cut(s)	12, 106, 154, 157, 406
MroNI	GCCGGC	1 cut(s)	34
MroXI	GAANNNNTTC	2 cut(s)	198, 437
MseI	TTAA	1 cut(s)	189
MspI	CCGG	2 cut(s)	35, 218
MwoI	GCNNNNNNNGC	9 cut(s)	11, 57, 74, 101, 159, 164, 221, 383, 387
NaeI	GCCGGC	1 cut(s)	36
NdeII	GATC	1 cut(s)	331
NgoMIV	GCCGGC	1 cut(s)	34
NlaIII	CATG	2 cut(s)	34, 49
NlaIV	GGNNCC	5 cut(s)	23, 109, 216, 231, 385
NsbI	TGCGCA	1 cut(s)	59
NspI	RCATGY	1 cut(s)	34
PdiI	GCCGGC	1 cut(s)	36
PdmI	GAANNNNTTC	2 cut(s)	198, 437
PfeI	GAWTC	1 cut(s)	292
PkrI	GCNGC	3 cut(s)	16, 79, 223
PspFI	CCCAGC	1 cut(s)	487
PspN4I	GGNNCC	5 cut(s)	23, 109, 216, 231, 385
PspOMI	GGGCCC	1 cut(s)	229
PspPI	GGNCC	3 cut(s)	229, 230, 384
PstNI	CAGNNNCTG	1 cut(s)	349
SalI	GTCGAC	3 cut(s)	41, 120, 254
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	3 cut(s)	15, 78, 222
Sau3AI	GATC	1 cut(s)	331
Sau96I	GGNCC	3 cut(s)	229, 230, 384
SduI	GDGCHC	3 cut(s)	70, 217, 233
SetI	ASST	5 cut(s)	106, 127, 199, 348, 392
Sse9I	AATT	1 cut(s)	186
SsiI	CCGC	5 cut(s)	14, 38, 78, 151, 381
SspI	AATATT	1 cut(s)	470
TaqI	TCGA	5 cut(s)	42, 121, 137, 184, 255
TasI	AATT	1 cut(s)	186
TauI	GCSGC	2 cut(s)	17, 80
TfiI	GAWTC	1 cut(s)	292
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TseI	GCWGC	1 cut(s)	221
TspDTI	ATGAA	2 cut(s)	123, 468
XagI	CCTNNNNNAGG	1 cut(s)	300
XceI	RCATGY	1 cut(s)	34
XmiI	GTMKAC	3 cut(s)	42, 121, 255
XmnI	GAANNNNTTC	2 cut(s)	198, 437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.