pycom11g21150

Mpv17 / PMP22 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0012834
Physical Location & Seq
Forward (+)
24277282 .. 24281046
3765 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1362 bp
ATGCGAAAACAATCGGATTTCGCCATTACGACGCGGCGAGATTCAAATTTCAGACTCAACTCAACTCGGTCTCTCTCGTCTCGGTTCCAACGGTCAGCCATGGCCACCATCCACTGTATAGCTTCTCAGAGCTTCCTTTCTCACCCAAACCACAAACCCCGAAAACCCATTACCGCACATCCAAAACCCATCTCGACCTCCAATTTTCCCACCTGCAAACTCCCAAAAAACCCATCTTTCCTGAGAAACAAACAGAAAAGCAGGTGGCTTCTGAACTCGGTGATCGAGCGAGAAGAGTGTGATGTGATTCCGGTTCAGAGCACCGACTGTACGGACCAGAAGGAAGGGGCGGTGGCGGCGAGGAGGGCGGATAGCGACGGCGGGGATCAGGGGGAGTTAGTGAGTCAGGTGGGCGGGTTCGGAGAAAGTGAGGGGAGGCTTTCGTTTGAAGGTGCTGGTGGTTTTGGGTCTTCTGGGGTTGGAAGTGAGAGGGAGAGGGAGGAATTTGAGAGGCTGGTAGATAGGACTATCAATGCCACTGTTGTGCTTGCAGCTGGTACTTTTGCTCTCACTAAGTTGATCACCGTCGATCAGGATTACTGGCATGGTTGGACTCTATATGAGATCCTACGGTATGCACCTCAACACAACTGGTCTGCTTATGAGGAAGCTCTCAAGACTAACCCAGTTTTAGCCAAAATGGTGATTAGTGGTGTCGTGTACTCTGTAGGGGACTGGATTGCACAGTGCTTTGAAGGAAAACCTCTACTTGAATTTGATCGAACGCGAATGCTCAGATCAGGTCTTGTTGGATTTACTCTCCATGGTTCCCTCTCTCACTACTATTACCAGTTATGCGAGGAGCTTATTCCTTTCCAAGACTGGTGGGTGGTTCCTGCCAAAGTAGCCTTCGACCAAACTGTATGGGCAGCGATTTGGAACAGCATATACTTTACAGTTTTGGGATTTTTGCGTTTTGAATCTCCCATCAGTATTTTTAGTGAACTTAAAGCAACATTTTGGCCAATGCTGACAGCAGGGTGGAAGCTTTGGCCATTTGCGCATCTTGTTACCTATGGTGTGATCCCTGTCGAACAAAGGCTCTTATGGGTGGACTGTGTAGAGTTAATCTGGGTGACTATACTCTCAACTTACTCAAATGAAAAATCAGAAGCAAGAATTTCCGAGGCACCAGCTGAAGCAAATTCCAGTTCTTCAGACACAGGTCCTCTTGAGGTATTATACAAACCCTTTTACACTGATTTCCTTACGTATATAAGAGCCGCAGATTACACACTGTGCTACATTTTTTTTTTACTTCTTCCCCCTTCCATCAGGAGTAAACAAATTGAAAACGACTAG

Protein Analysis

454

Amino Acids

51.38

Weight (kDa)

6.19

Isoelectric Point (pI)

47.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 323 - 383 2.4e-17 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012834)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52870 AT1G52870
fragaria_vesca FvH4_3g20720
malus_domestica MD03G1222400.v1.1 MD11G1239700.v1.1
prunus_persica Prupe.4G187300_v2.0.a1
pyrus_communis pycom03g17100 pycom11g21150
rosa_chinensis RchiOBHm_Chr5g0034871
rosa_laevigata RLG00000033582
rosa_multiflora Rmu_sc0002460.1_g000037
rosa_roxburghii Rroxscaffold_1G00045460
rosa_rugosa Rorug05G0148900
rosa_samantha Rh5AG241200 Rh5BG241400 Rh5CG272400 Rh5DG249900
rosa_wichuraiana Rw5G022050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 221, 252
Acc16I TGCGCA 1 cut(s) 1062
Acc36I ACCTGC 2 cut(s) 221, 252
AccB1I GGYRCC 1 cut(s) 1189
AccII CGCG 2 cut(s) 34, 787
AciI CCGC 8 cut(s) 34, 174, 350, 356, 368, 381, 414, 1284
AclWI GGATC 3 cut(s) 393, 619, 1078
AcoI YGGCCR 3 cut(s) 102, 1022, 1052
AcsI RAATTY 5 cut(s) 46, 503, 773, 1179, 1204
AcuI CTGAAG 2 cut(s) 1200, 1218
AdeI CACNNNGTG 1 cut(s) 1299
AfaI GTAC 3 cut(s) 331, 559, 722
AgsI TTSAA 6 cut(s) 45, 449, 755, 773, 980, 1352
AjuI GAANNNNNNNTTGG 2 cut(s) 893, 925
AleI CACNNNNGTG 1 cut(s) 542
AluBI AGCT 7 cut(s) 122, 132, 554, 671, 865, 1048, 1196
AluI AGCT 7 cut(s) 122, 132, 554, 671, 865, 1048, 1196
Alw21I GWGCWC 1 cut(s) 323
Alw26I GTCTC 2 cut(s) 75, 84
AlwI GGATC 3 cut(s) 393, 619, 1078
AoxI GGCC 3 cut(s) 102, 1022, 1052
ApeKI GCWGC 2 cut(s) 551, 929
ApoI RAATTY 5 cut(s) 46, 503, 773, 1179, 1204
AspLEI GCGC 1 cut(s) 1063
AspS9I GGNCC 2 cut(s) 334, 1226
AsuHPI GGTGA 5 cut(s) 134, 292, 574, 715, 1147
AvaII GGWCC 2 cut(s) 334, 1226
BalI TGGCCA 3 cut(s) 104, 1024, 1054
BanI GGYRCC 1 cut(s) 1189
BbsI GAAGAC 1 cut(s) 462
Bbv12I GWGCWC 1 cut(s) 323
BbvI GCAGC 2 cut(s) 563, 941
BccI CCATC 5 cut(s) 116, 197, 241, 995, 1340
BceAI ACGGC 1 cut(s) 394
BclI TGATCA 1 cut(s) 579
BcoDI GTCTC 2 cut(s) 75, 84
BfaI CTAG 1 cut(s) 1360
BfmI CTRYAG 1 cut(s) 726
BfuAI ACCTGC 2 cut(s) 221, 252
BisI GCNGC 5 cut(s) 35, 357, 552, 930, 1284
BlsI GCNGC 5 cut(s) 36, 358, 553, 931, 1285
Bme18I GGWCC 2 cut(s) 334, 1226
BmgT120I GGNCC 2 cut(s) 334, 1226
BmiI GGNNCC 4 cut(s) 86, 829, 894, 1191
BmrI ACTGGG 1 cut(s) 680
BmsI GCATC 1 cut(s) 1072
BmuI ACTGGG 1 cut(s) 680
BoxI GACNNNNGTC 1 cut(s) 1224
BpiI GAAGAC 1 cut(s) 462
BpuEI CTTGAG 2 cut(s) 659, 1253
BsaAI YACGTR 1 cut(s) 1272
BsaI GGTCTC 1 cut(s) 75
BsaJI CCNNGG 3 cut(s) 99, 823, 1185
BsaWI WCCGGW 1 cut(s) 310
Bse1I ACTGG 7 cut(s) 605, 656, 686, 740, 850, 887, 1209
BseDI CCNNGG 3 cut(s) 99, 823, 1185
BseGI GGATG 2 cut(s) 108, 178
BseMII CTCAG 3 cut(s) 140, 233, 808
BseNI ACTGG 7 cut(s) 605, 656, 686, 740, 850, 887, 1209
BseRI GAGGAG 2 cut(s) 376, 875
BseXI GCAGC 2 cut(s) 563, 941
Bsh1236I CGCG 2 cut(s) 34, 787
BshFI GGCC 3 cut(s) 104, 1024, 1054
BshNI GGYRCC 1 cut(s) 1189
BsiHKAI GWGCWC 1 cut(s) 323
BsiSI CCGG 1 cut(s) 311
BslFI GGGAC 1 cut(s) 746
BsmAI GTCTC 2 cut(s) 75, 84
BsmBI CGTCTC 1 cut(s) 84
BsmFI GGGAC 1 cut(s) 746
BsmI GAATGC 1 cut(s) 795
BsnI GGCC 3 cut(s) 104, 1024, 1054
Bso31I GGTCTC 1 cut(s) 75
Bsp1286I GDGCHC 1 cut(s) 323
Bsp143I GATC 8 cut(s) 282, 385, 579, 589, 624, 778, 797, 1083
Bsp19I CCATGG 2 cut(s) 99, 823
BspACI CCGC 8 cut(s) 34, 174, 350, 356, 368, 381, 414, 1284
BspANI GGCC 3 cut(s) 104, 1024, 1054
BspCNI CTCAG 3 cut(s) 139, 234, 807
BspFNI CGCG 2 cut(s) 34, 787
BspLI GGNNCC 4 cut(s) 86, 829, 894, 1191
BspMI ACCTGC 2 cut(s) 221, 252
BspPI GGATC 3 cut(s) 393, 619, 1078
BspT107I GGYRCC 1 cut(s) 1189
BspTNI GGTCTC 1 cut(s) 75
BsrI ACTGG 7 cut(s) 605, 656, 686, 740, 850, 887, 1209
BssECI CCNNGG 3 cut(s) 99, 823, 1185
BssMI GATC 8 cut(s) 282, 385, 579, 589, 624, 778, 797, 1083
BssT1I CCWWGG 2 cut(s) 99, 823
Bst6I CTCTTC 1 cut(s) 288
BstBAI YACGTR 1 cut(s) 1272
BstC8I GCNNGC 1 cut(s) 549
BstDEI CTNAG 4 cut(s) 126, 242, 573, 794
BstDSI CCRYGG 2 cut(s) 99, 823
BstF5I GGATG 2 cut(s) 108, 178
BstFNI CGCG 2 cut(s) 34, 787
BstHHI GCGC 1 cut(s) 1063
BstKTI GATC 8 cut(s) 285, 388, 582, 592, 627, 781, 800, 1086
BstMAI GTCTC 2 cut(s) 75, 84
BstMBI GATC 8 cut(s) 282, 385, 579, 589, 624, 778, 797, 1083
BstMWI GCNNNNNNNGC 4 cut(s) 356, 365, 905, 1060
BstPAI GACNNNNGTC 1 cut(s) 1224
BstSFI CTRYAG 1 cut(s) 726
BstSNI TACGTA 1 cut(s) 1272
BstUI CGCG 2 cut(s) 34, 787
BstV1I GCAGC 2 cut(s) 563, 941
BstV2I GAAGAC 1 cut(s) 462
BstX2I RGATCY 1 cut(s) 624
BstYI RGATCY 1 cut(s) 624
BsuRI GGCC 3 cut(s) 104, 1024, 1054
BtgI CCRYGG 2 cut(s) 99, 823
BtsCI GGATG 2 cut(s) 108, 178
BtsIMutI CAGTG 5 cut(s) 112, 537, 752, 1257, 1295
BveI ACCTGC 2 cut(s) 221, 252
Cac8I GCNNGC 1 cut(s) 549
CfoI GCGC 1 cut(s) 1063
Cfr13I GGNCC 2 cut(s) 334, 1226
CseI GACGC 1 cut(s) 40
Csp6I GTAC 3 cut(s) 330, 558, 721
CspCI CAANNNNNGTGG 2 cut(s) 866, 901
CviAII CATG 3 cut(s) 100, 605, 824
CviQI GTAC 3 cut(s) 330, 558, 721
DdeI CTNAG 4 cut(s) 126, 242, 573, 794
DpnI GATC 8 cut(s) 284, 387, 581, 591, 626, 780, 799, 1085
DpnII GATC 8 cut(s) 282, 385, 579, 589, 624, 778, 797, 1083
DraIII CACNNNGTG 1 cut(s) 1299
EaeI YGGCCR 3 cut(s) 102, 1022, 1052
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
EciI GGCGGA 1 cut(s) 383
Eco105I TACGTA 1 cut(s) 1272
Eco130I CCWWGG 2 cut(s) 99, 823
Eco31I GGTCTC 1 cut(s) 75
Eco47I GGWCC 2 cut(s) 334, 1226
Eco57I CTGAAG 2 cut(s) 1200, 1218
EcoO109I RGGNCCY 1 cut(s) 1226
EcoT14I CCWWGG 2 cut(s) 99, 823
ErhI CCWWGG 2 cut(s) 99, 823
Esp3I CGTCTC 1 cut(s) 84
FaeI CATG 3 cut(s) 103, 608, 827
FaqI GGGAC 1 cut(s) 746
FatI CATG 3 cut(s) 99, 604, 823
FauI CCCGC 2 cut(s) 374, 407
FbaI TGATCA 1 cut(s) 579
Fnu4HI GCNGC 5 cut(s) 35, 357, 552, 930, 1284
FokI GGATG 2 cut(s) 95, 165
Fsp4HI GCNGC 5 cut(s) 35, 357, 552, 930, 1284
FspBI CTAG 1 cut(s) 1360
FspI TGCGCA 1 cut(s) 1062
GlaI GCGC 1 cut(s) 1062
GluI GCNGC 5 cut(s) 35, 357, 552, 930, 1284
HaeIII GGCC 3 cut(s) 104, 1024, 1054
HapII CCGG 1 cut(s) 311
HgaI GACGC 1 cut(s) 40
HhaI GCGC 1 cut(s) 1063
Hin1II CATG 3 cut(s) 103, 608, 827
Hin6I GCGC 1 cut(s) 1061
HinP1I GCGC 1 cut(s) 1061
HindIII AAGCTT 1 cut(s) 1046
HinfI GANTC 6 cut(s) 41, 54, 307, 403, 613, 980
HpaII CCGG 1 cut(s) 311
HphI GGTGA 5 cut(s) 134, 292, 574, 715, 1147
Hpy166II GTNNAC 4 cut(s) 721, 1004, 1114, 1343
Hpy188III TCNNGA 6 cut(s) 193, 241, 593, 676, 1232, 1336
Hpy8I GTNNAC 4 cut(s) 721, 1004, 1114, 1343
Hpy99I CGWCG 3 cut(s) 34, 380, 590
HpyAV CCTTC 6 cut(s) 334, 338, 443, 749, 919, 1338
HpyCH4IV ACGT 1 cut(s) 1271
HpyCH4V TGCA 4 cut(s) 216, 551, 638, 743
HpyF10VI GCNNNNNNNGC 4 cut(s) 356, 365, 905, 1060
HpyF3I CTNAG 4 cut(s) 126, 242, 573, 794
HpySE526I ACGT 1 cut(s) 1271
Hsp92II CATG 3 cut(s) 103, 608, 827
HspAI GCGC 1 cut(s) 1061
Ksp22I TGATCA 1 cut(s) 579
Kzo9I GATC 8 cut(s) 282, 385, 579, 589, 624, 778, 797, 1083
LmnI GCTCC 1 cut(s) 862
Lsp1109I GCAGC 2 cut(s) 563, 941
LweI GCATC 1 cut(s) 1072
MaeI CTAG 1 cut(s) 1360
MaeII ACGT 1 cut(s) 1271
MaeIII GTNAC 2 cut(s) 1069, 1135
MalI GATC 8 cut(s) 284, 387, 581, 591, 626, 780, 799, 1085
MboI GATC 8 cut(s) 282, 385, 579, 589, 624, 778, 797, 1083
MboII GAAGA 4 cut(s) 305, 462, 1206, 1313
MflI RGATCY 1 cut(s) 624
MhlI GDGCHC 1 cut(s) 323
MlsI TGGCCA 3 cut(s) 104, 1024, 1054
MluCI AATT 7 cut(s) 46, 202, 503, 773, 1179, 1204, 1347
MluNI TGGCCA 3 cut(s) 104, 1024, 1054
MlyI GAGTC 3 cut(s) 48, 412, 607
MmeI TCCRAC 4 cut(s) 112, 460, 590, 790
Mox20I TGGCCA 3 cut(s) 104, 1024, 1054
MscI TGGCCA 3 cut(s) 104, 1024, 1054
MseI TTAA 2 cut(s) 1008, 1127
MslI CAYNNNNRTG 1 cut(s) 542
Msp20I TGGCCA 3 cut(s) 104, 1024, 1054
MspA1I CMGCKG 2 cut(s) 554, 1196
MspI CCGG 1 cut(s) 311
Mva1269I GAATGC 1 cut(s) 795
MvnI CGCG 2 cut(s) 34, 787
MwoI GCNNNNNNNGC 4 cut(s) 356, 365, 905, 1060
NcoI CCATGG 2 cut(s) 99, 823
NdeII GATC 8 cut(s) 282, 385, 579, 589, 624, 778, 797, 1083
NlaIII CATG 3 cut(s) 103, 608, 827
NlaIV GGNNCC 4 cut(s) 86, 829, 894, 1191
NmuCI GTSAC 1 cut(s) 1135
NsbI TGCGCA 1 cut(s) 1062
OliI CACNNNNGTG 1 cut(s) 542
PaqCI CACCTGC 2 cut(s) 221, 252
PctI GAATGC 1 cut(s) 795
PfeI GAWTC 3 cut(s) 41, 307, 980
PkrI GCNGC 5 cut(s) 36, 358, 553, 931, 1285
PleI GAGTC 3 cut(s) 48, 411, 607
PpsI GAGTC 3 cut(s) 48, 411, 607
Ppu21I YACGTR 1 cut(s) 1272
PpuMI RGGWCCY 1 cut(s) 1226
PshAI GACNNNNGTC 1 cut(s) 1224
Psp5II RGGWCCY 1 cut(s) 1226
PspN4I GGNNCC 4 cut(s) 86, 829, 894, 1191
PspPI GGNCC 2 cut(s) 334, 1226
PspPPI RGGWCCY 1 cut(s) 1226
PsrI GAACNNNNNNTAC 2 cut(s) 932, 964
PsuI RGATCY 1 cut(s) 624
PvuII CAGCTG 2 cut(s) 554, 1196
RsaI GTAC 3 cut(s) 331, 559, 722
RsaNI GTAC 3 cut(s) 330, 558, 721
RseI CAYNNNNRTG 1 cut(s) 542
SaqAI TTAA 2 cut(s) 1008, 1127
SatI GCNGC 5 cut(s) 35, 357, 552, 930, 1284
Sau3AI GATC 8 cut(s) 282, 385, 579, 589, 624, 778, 797, 1083
Sau96I GGNCC 2 cut(s) 334, 1226
SchI GAGTC 3 cut(s) 48, 412, 607
SduI GDGCHC 1 cut(s) 323
SfaNI GCATC 1 cut(s) 1072
SfcI CTRYAG 1 cut(s) 726
SinI GGWCC 2 cut(s) 334, 1226
SmiMI CAYNNNNRTG 1 cut(s) 542
SmlI CTYRAG 2 cut(s) 674, 1232
SmoI CTYRAG 2 cut(s) 674, 1232
SnaBI TACGTA 1 cut(s) 1272
Sse9I AATT 7 cut(s) 46, 202, 503, 773, 1179, 1204, 1347
SsiI CCGC 8 cut(s) 34, 174, 350, 356, 368, 381, 414, 1284
SspMI CTAG 1 cut(s) 1360
StyI CCWWGG 2 cut(s) 99, 823
TaiI ACGT 1 cut(s) 1274
TaqI TCGA 6 cut(s) 194, 285, 588, 781, 912, 1092
TaqII GACCGA 1 cut(s) 57
TasI AATT 7 cut(s) 46, 202, 503, 773, 1179, 1204, 1347
TatI WGTACW 1 cut(s) 720
TauI GCSGC 3 cut(s) 37, 359, 1286
TfiI GAWTC 3 cut(s) 41, 307, 980
Tru1I TTAA 2 cut(s) 1008, 1127
Tru9I TTAA 2 cut(s) 1008, 1127
TscAI CASTG 5 cut(s) 119, 544, 752, 1264, 1302
TseFI GTSAC 1 cut(s) 1135
TseI GCWGC 2 cut(s) 551, 929
Tsp45I GTSAC 1 cut(s) 1135
TspDTI ATGAA 1 cut(s) 1176
TspGWI ACGGA 1 cut(s) 347
TspRI CASTG 5 cut(s) 119, 544, 752, 1264, 1302
VpaK11BI GGWCC 2 cut(s) 334, 1226
XapI RAATTY 5 cut(s) 46, 503, 773, 1179, 1204
XspI CTAG 1 cut(s) 1360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.